Q9XIB5
Gene name |
REM19 (RTV1, At1g49480, F13F21.8) |
Protein name |
B3 domain-containing protein REM19 |
Names |
Protein RELATED TO VERNALIZATION 1, Protein REPRODUCTIVE MERISTEM 19 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G49480 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9XIB5
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9XIB5-F1 | Predicted | AlphaFoldDB |
7 variants for Q9XIB5
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_1_18315339_T_C | 41 | K>R | No | 1000Genomes | |
| tmp_1_18315309_C_G | 51 | S>T | No | 1000Genomes | |
| ENSVATH13464114 | 65 | L>F | No | 1000Genomes | |
| tmp_1_18315235_T_A | 76 | N>Y | No | 1000Genomes | |
| ENSVATH01328864 | 84 | T>I | No | 1000Genomes | |
| ENSVATH00089726 | 214 | V>I | No | 1000Genomes | |
| ENSVATH13464090 | 216 | E>K | No | 1000Genomes |
No associated diseases with Q9XIB5
4 regional properties for Q9XIB5
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Homeobox domain | 204 - 268 | IPR001356 |
| conserved_site | Homeobox, conserved site | 239 - 262 | IPR017970 |
| domain | Homeobox domain, metazoa | 228 - 239 | IPR020479-1 |
| domain | Homeobox domain, metazoa | 243 - 262 | IPR020479-2 |
2 GO annotations of cellular component
| Name | Definition |
|---|---|
| nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
1 GO annotations of molecular function
| Name | Definition |
|---|---|
| DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| response to cold | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. |
1 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q2R9D2 | Os11g0197600 | B3 domain-containing protein Os11g0197600 | Oryza sativa subsp japonica (Rice) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MQMDSAQNQF | NKRARLFEDP | ELKDAKVIYP | SNPESTEPVN | KGYGGSTAIQ | SFFKESKAEE |
| 70 | 80 | 90 | 100 | 110 | 120 |
| TPKVLKKRGR | KKKNPNPEEV | NSSTPGGDDS | ENRSKFYESA | SARKRTVTAE | ERERAVNAAK |
| 130 | 140 | 150 | 160 | 170 | 180 |
| TFEPTNPYFR | VVLRPSYLYR | GCIMYLPSGF | AEKYLSGISG | FIKLQLGEKQ | WPVRCLYKAG |
| 190 | 200 | 210 | 220 | ||
| RAKFSQGWYE | FTLENNIGEG | DVCVFELLRT | RDFVLEVTAF | RVNEYV |