Q9I9H8
Gene name |
apaf1 |
Protein name |
Apoptotic protease-activating factor 1 |
Names |
APAF-1 |
Species |
Danio rerio (Zebrafish) (Brachydanio rerio) |
KEGG Pathway |
dre:58131 |
EC number |
|
Protein Class |
|

Descriptions
Autoinhibitory domains (AIDs)
Target domain |
130-376 (NB-ARC domain) |
Relief mechanism |
Ligand binding, Partner binding |
Assay |
|
Accessory elements
No accessory elements
References
- Bao Q et al. (2005) "Structure of Apaf-1 in the auto-inhibited form: a critical role for ADP", Cell cycle (Georgetown, Tex.), 4, 1001-3
- Reubold TF et al. (2011) "Crystal structure of full-length Apaf-1: how the death signal is relayed in the mitochondrial pathway of apoptosis", Structure (London, England : 1993), 19, 1074-83
- Bao Q et al. (2007) "Calcium blocks formation of apoptosome by preventing nucleotide exchange in Apaf-1", Molecular cell, 25, 181-92
- Shakeri R et al. (2015) "Role of the salt bridge between glutamate 546 and arginine 907 in preservation of autoinhibited form of Apaf-1", International journal of biological macromolecules, 81, 370-4
Autoinhibited structure

Activated structure

1 structures for Q9I9H8
Entry ID | Method | Resolution | Chain | Position | Source |
---|---|---|---|---|---|
AF-Q9I9H8-F1 | Predicted | AlphaFoldDB |
No variants for Q9I9H8
Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
---|---|---|---|---|---|
No variants for Q9I9H8 |
No associated diseases with Q9I9H8
19 regional properties for Q9I9H8
Type | Name | Position | InterPro Accession |
---|---|---|---|
domain | CARD domain | 1 - 90 | IPR001315 |
repeat | WD40 repeat | 606 - 645 | IPR001680-1 |
repeat | WD40 repeat | 648 - 734 | IPR001680-2 |
repeat | WD40 repeat | 737 - 785 | IPR001680-3 |
repeat | WD40 repeat | 795 - 827 | IPR001680-4 |
repeat | WD40 repeat | 830 - 870 | IPR001680-5 |
repeat | WD40 repeat | 873 - 921 | IPR001680-6 |
repeat | WD40 repeat | 944 - 994 | IPR001680-7 |
repeat | WD40 repeat | 997 - 1121 | IPR001680-8 |
repeat | WD40 repeat | 1124 - 1172 | IPR001680-9 |
repeat | WD40 repeat | 1176 - 1212 | IPR001680-10 |
repeat | WD40 repeat | 1215 - 1254 | IPR001680-11 |
domain | NB-ARC | 136 - 374 | IPR002182 |
conserved_site | WD40 repeat, conserved site | 674 - 688 | IPR019775 |
repeat | G-protein beta WD-40 repeat | 899 - 913 | IPR020472-1 |
repeat | G-protein beta WD-40 repeat | 1023 - 1037 | IPR020472-2 |
repeat | G-protein beta WD-40 repeat | 1066 - 1080 | IPR020472-3 |
domain | APAF-1 helical domain | 456 - 589 | IPR041452 |
domain | Apoptotic protease-activating factor 1, winged-helix domain | 380 - 447 | IPR048975 |
1 GO annotations of cellular component
Name | Definition |
---|---|
apoptosome | A multisubunit protein complex involved in the signaling phase of the apoptotic process. In mammals it is typically composed of seven Apaf-1 subunits bound to cytochrome c and caspase-9. A similar complex to promote apoptosis is formed from homologous gene products in other eukaryotic organisms. |
2 GO annotations of molecular function
Name | Definition |
---|---|
ADP binding | Binding to ADP, adenosine 5'-diphosphate. |
ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
2 GO annotations of biological process
Name | Definition |
---|---|
apoptotic signaling pathway | The series of molecular signals which triggers the apoptotic death of a cell. The pathway starts with reception of a signal, and ends when the execution phase of apoptosis is triggered. |
regulation of apoptotic process | Any process that modulates the occurrence or rate of cell death by apoptotic process. |
19 homologous proteins in AiPD
UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
---|---|---|---|---|
Q3MJ13 | WDR72 | WD repeat-containing protein 72 | Homo sapiens (Human) | PR |
O14727 | APAF1 | Apoptotic protease-activating factor 1 | Homo sapiens (Human) | EV |
O88879 | Apaf1 | Apoptotic protease-activating factor 1 | Mus musculus (Mouse) | EV |
Q9EPV5 | Apaf1 | Apoptotic protease-activating factor 1 | Rattus norvegicus (Rat) | SS |
O64973 | RPS5 | Disease resistance protein RPS5 | Arabidopsis thaliana (Mouse-ear cress) | PR |
P60838 | SUMM2 | Disease resistance protein SUMM2 | Arabidopsis thaliana (Mouse-ear cress) | PR |
P0C8S1 | RPP8L2 | Probable disease resistance RPP8-like protein 2 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q8W3K3 | At1g58400 | Putative disease resistance protein At1g58400 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q9C646 | RXW24L | Probable disease resistance protein RXW24L | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q9XIF0 | At1g59780 | Putative disease resistance protein At1g59780 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q940K0 | UNI | Disease resistance protein UNI | Arabidopsis thaliana (Mouse-ear cress) | PR |
O22727 | At1g61190 | Probable disease resistance protein At1g61190 | Arabidopsis thaliana (Mouse-ear cress) | PR |
O64790 | At1g61300 | Probable disease resistance protein At1g61300 | Arabidopsis thaliana (Mouse-ear cress) | PR |
O64789 | At1g61310 | Probable disease resistance protein At1g61310 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q39214 | RPM1 | Disease resistance protein RPM1 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q9LRR4 | RPPL1 | Putative disease resistance RPP13-like protein 1 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q38834 | RPP13L4 | Disease resistance RPP13-like protein 4 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q9T048 | At4g27190 | Disease resistance protein At4g27190 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q9FJB5 | RPP8L3 | Disease resistance RPP8-like protein 3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
10 | 20 | 30 | 40 | 50 | 60 |
MEERARSRLL | RSKATLEQDI | KASYLMDHMI | SDGVLTNDEE | AKVLSKATRK | EQAVALLETL |
70 | 80 | 90 | 100 | 110 | 120 |
LRKDNRAYIS | FYNALIRESY | GDLASLLHSD | LPLLSPEGEK | SFADGVSPSV | QAILSVGGVP |
130 | 140 | 150 | 160 | 170 | 180 |
QRPVVFVSRP | PLLNLIREML | YQLRDTPGWV | TVFGMAGSGK | SVMAAEVVRD | RSLIKECFPD |
190 | 200 | 210 | 220 | 230 | 240 |
GVHWLSVGQC | ERADLLVRMQ | SLCFRLEQCQ | SSDTSQRPPS | TVEEAKERLR | FLMLRRFPRS |
250 | 260 | 270 | 280 | 290 | 300 |
LLILDDVWDS | SSLRSFDIQC | RVLLTTRNRA | LTDSVSGVRY | EVPVENGLDE | EKALEILALY |
310 | 320 | 330 | 340 | 350 | 360 |
VNGKMHKLPE | QARSIVSECK | GSPLVVSLIG | ALLREFPDRW | SYYLRQLQQK | QFKRIRKSSS |
370 | 380 | 390 | 400 | 410 | 420 |
YDYEALDQAM | DASLQVLEAE | HQELYRDLSV | MQKDIKVPAK | VLSVLWGLEL | EEVEDVLQEF |
430 | 440 | 450 | 460 | 470 | 480 |
VNKSLLFRDC | NQRPYRYYLH | DLQLDFLAEQ | NRDQIAELHK | KMVRQYQRFY | SKRPPDSADK |
490 | 500 | 510 | 520 | 530 | 540 |
DSLYWYQFIP | YHMAKAGLSK | ELYSLMFSLD | WVKEKARIMG | SAHLINDYVE | YGEILDKENS |
550 | 560 | 570 | 580 | 590 | 600 |
EVRVQFQEFL | SLNGHHLEQR | PFPDVVQLAL | SQPDRSEVYR | QALMQAQKRA | SRGQIYLNWV |
610 | 620 | 630 | 640 | 650 | 660 |
NKNIEEGLSR | LVMHPHQGAV | YYACFSKDGS | KIASCGASKA | LRVFKSTSGE | KLLELQAHEE |
670 | 680 | 690 | 700 | 710 | 720 |
DVLCCAFSPD | DRHIATCASD | RKVKLWNVER | GVLIREFEVE | HEEQINHCQF | TNTGRRVLLA |
730 | 740 | 750 | 760 | 770 | 780 |
TCSNDKFTNT | RLWNPNKKTS | QNTMFGHMEP | VNHCCFSPND | LYLATSSSDG | SLKLFEVSSA |
790 | 800 | 810 | 820 | 830 | 840 |
NEWKSIDVDS | FFPESDEEIK | AMVKCSTWSA | DGSQIICAAR | NTVFVFDVET | SDLLLKLKTS |
850 | 860 | 870 | 880 | 890 | 900 |
RLSTIQFCHA | CPNSSLLAVA | LSHYTVELWN | FESSKKKAEC | SGHLSWVHCV | QFSPDGSLLL |
910 | 920 | 930 | 940 | 950 | 960 |
SSSDDQTIRL | WETDRVHTSS | AVALKRDTDV | LSSHSDATII | APDSSNRLQV | LSGSTGAVVL |
970 | 980 | 990 | 1000 | 1010 | 1020 |
ESEELSSRIR | CSCISRNAAF | VALGSEDGTV | QVIEVPSSKA | SVKLSGHTKT | VHHCQFTDDC |
1030 | 1040 | 1050 | 1060 | 1070 | 1080 |
EILITSSEDS | TIRVWKWRTG | ECMVLQGHME | PVRKFHLLSS | SSSPHLFSWS | FDGTVKVWDL |
1090 | 1100 | 1110 | 1120 | 1130 | 1140 |
TRGQMLQDLV | CHEGAVLSCD | VSSDGRLFAT | TSANRTAKVW | SSASWKMLFL | LEGHKDCVRS |
1150 | 1160 | 1170 | 1180 | 1190 | 1200 |
CRFSWDNKRL | ATGDDNGEIR | LWSMLDGALL | KICPRDTKDS | MNSYHAGWVT | DLHFSPDNRV |
1210 | 1220 | 1230 | 1240 | 1250 | 1260 |
LVSTAGYIKW | WSVESGEALQ | TFYTMGGNLK | KIHVSPDFST | FITVDSIGIL | YILKRLEGEG |
T |