Q9H4L7
Gene name |
SMARCAD1 (KIAA1122) |
Protein name |
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 |
Names |
ATP-dependent helicase 1, hHEL1 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:56916 |
EC number |
3.6.4.12: Acting on ATP; involved in cellular and subcellular movement |
Protein Class |
|

Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure

Activated structure

4 structures for Q9H4L7
Entry ID | Method | Resolution | Chain | Position | Source |
---|---|---|---|---|---|
6H3A | X-ray | 550 A | B/D | 95-347 | PDB |
6QU1 | X-ray | 370 A | D | 151-198 | PDB |
7Z36 | X-ray | 280 A | C/S | 148-198 | PDB |
AF-Q9H4L7-F1 | Predicted | AlphaFoldDB |
544 variants for Q9H4L7
Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
---|---|---|---|---|---|
RCV001291509 rs1753894795 |
853 | S>T | Neurodevelopmental disorder [ClinVar] | Yes |
ClinVar dbSNP |
CA357674605 rs1229517841 |
2 | N>S | No |
ClinGen gnomAD |
|
TCGA novel | 3 | L>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA357674611 rs1220383889 |
3 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
rs1330794490 CA357674616 |
4 | F>L | No |
ClinGen gnomAD |
|
CA3012956 rs200143335 |
5 | N>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs201340263 CA357674629 |
5 | N>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs1281392142 CA357674626 |
5 | N>S | No |
ClinGen TOPMed |
|
rs1487431135 CA357674640 |
7 | D>V | No |
ClinGen gnomAD |
|
rs1351299800 CA357674645 |
8 | R>C | No |
ClinGen TOPMed |
|
rs752567514 COSM277381 CA3012959 |
10 | R>C | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
rs1180157935 CA357674659 |
10 | R>H | No |
ClinGen gnomAD |
|
rs777413974 CA3012961 |
12 | E>D | No |
ClinGen ExAC gnomAD |
|
rs746504711 CA3012962 |
13 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
CA357674696 rs1417508792 |
15 | N>K | No |
ClinGen gnomAD |
|
CA3012963 rs770492286 |
15 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3012964 rs780582888 |
16 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
COSM1730705 CA357674701 rs780582888 |
16 | K>T | liver [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
CA357674711 rs1359351804 |
17 | I>M | No |
ClinGen TOPMed gnomAD |
|
rs955261522 CA101658727 |
19 | E>A | No |
ClinGen Ensembl |
|
CA357674720 rs1449674508 |
19 | E>K | No |
ClinGen TOPMed gnomAD |
|
CA3012965 rs749813218 |
20 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs895263423 CA101658731 |
23 | A>S | No |
ClinGen TOPMed |
|
CA101658738 rs946694105 |
23 | A>V | No |
ClinGen TOPMed |
|
CA101658745 rs774542369 |
24 | T>A | No |
ClinGen ExAC TOPMed |
|
CA3012967 rs774542369 |
24 | T>S | No |
ClinGen ExAC TOPMed |
|
rs1560504546 CA357674756 |
25 | P>A | No |
ClinGen Ensembl |
|
CA357674759 rs1311954357 |
25 | P>L | No |
ClinGen TOPMed gnomAD |
|
CA357674768 rs748529019 |
27 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
CA357674772 rs1223552257 |
27 | P>L | No |
ClinGen TOPMed gnomAD |
|
rs748529019 CA3012968 |
27 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 27 | P>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs772364440 CA101658768 |
28 | S>C | No |
ClinGen ExAC gnomAD |
|
rs772364440 CA3012969 |
28 | S>F | No |
ClinGen ExAC gnomAD |
|
rs760805792 CA3012971 |
29 | Q>H | No |
ClinGen ExAC gnomAD |
|
CA3012972 rs766417188 |
30 | P>L | No |
ClinGen ExAC |
|
CA101658800 rs908180052 |
32 | P>R | No |
ClinGen Ensembl |
|
TCGA novel | 34 | S>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA357674811 rs1269163525 |
34 | S>L | No |
ClinGen gnomAD |
|
CA101658827 rs999746719 |
35 | P>S | No |
ClinGen TOPMed |
|
rs1429264424 CA357674829 |
37 | S>F | No |
ClinGen Ensembl |
|
CA3012975 rs374058320 |
38 | L>V | No |
ClinGen ESP ExAC gnomAD |
|
rs961050401 CA101658858 |
39 | S>I | No |
ClinGen TOPMed gnomAD |
|
rs961050401 CA357674839 |
39 | S>T | No |
ClinGen TOPMed gnomAD |
|
CA357674850 rs1437639754 |
41 | E>A | No |
ClinGen gnomAD |
|
CA3012976 rs752372963 |
41 | E>Q | No |
ClinGen ExAC |
|
CA357674852 rs1437639754 |
41 | E>V | No |
ClinGen gnomAD |
|
CA357674861 rs1560504655 |
42 | E>D | No |
ClinGen Ensembl |
|
CA357674855 rs1261850925 |
42 | E>K | No |
ClinGen TOPMed |
|
CA3012977 rs758244473 |
43 | E>K | No |
ClinGen ExAC gnomAD |
|
CA357674871 rs1425505009 |
44 | N>D | No |
ClinGen gnomAD |
|
rs11541129 CA101658913 |
50 | S>N | No |
ClinGen Ensembl |
|
rs1560504694 CA357674919 |
51 | R>G | No |
ClinGen Ensembl |
|
CA3012980 rs80207279 |
52 | A>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs756740141 CA3012981 |
53 | N>D | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1442018532 CA357674952 |
56 | D>N | No |
ClinGen gnomAD |
|
TCGA novel | 57 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs745419051 CA3012983 |
61 | E>G | No |
ClinGen ExAC gnomAD |
|
CA3012984 rs755375373 |
62 | K>T | No |
ClinGen ExAC gnomAD |
|
CA357675000 rs1198281033 |
63 | T>A | No |
ClinGen gnomAD |
|
CA357675004 rs1318754577 |
63 | T>I | No |
ClinGen gnomAD |
|
TCGA novel | 63 | T>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
VAR_028037 CA101672700 rs11723410 |
66 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen UniProt Ensembl NCI-TCGA dbSNP |
rs1178905666 CA357677963 |
67 | S>G | No |
ClinGen TOPMed |
|
CA357677965 rs1441976519 |
67 | S>N | No |
ClinGen gnomAD |
|
CA3013013 rs769953912 |
68 | V>G | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3013014 rs555203609 |
69 | P>A | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
rs555203609 CA3013015 |
69 | P>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs1457345949 CA357677993 |
72 | P>T | No |
ClinGen TOPMed gnomAD |
|
CA357678025 rs1480602421 |
76 | R>K | No |
ClinGen TOPMed |
|
CA3013016 rs768615672 |
77 | K>R | No |
ClinGen ExAC gnomAD |
|
CA357678040 rs1174396873 |
78 | A>E | No |
ClinGen TOPMed gnomAD |
|
CA3013017 rs371482856 |
79 | S>N | No |
ClinGen ESP ExAC gnomAD |
|
rs1213643466 CA357678054 |
80 | I>T | No |
ClinGen TOPMed |
|
CA357678051 rs1560518674 |
80 | I>V | No |
ClinGen Ensembl |
|
rs1161532307 CA357678058 |
81 | S>P | No |
ClinGen gnomAD |
|
rs761682389 CA3013019 |
82 | Y>C | No |
ClinGen ExAC gnomAD |
|
rs767064469 CA3013020 |
84 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1372310395 CA357678115 |
89 | I>V | No |
ClinGen gnomAD |
|
rs760074639 CA3013022 |
90 | Q>L | No |
ClinGen ExAC gnomAD |
|
CA357678151 rs1379345974 |
91 | Y>C | No |
ClinGen TOPMed |
|
CA357678166 rs1304602673 |
92 | I>V | No |
ClinGen TOPMed |
|
rs753428627 CA3013024 |
93 | D>V | No |
ClinGen ExAC gnomAD |
|
CA3013023 rs765937459 |
93 | D>Y | No |
ClinGen ExAC gnomAD |
|
CA3013025 rs758908976 |
98 | S>G | No |
ClinGen ExAC |
|
CA101672777 rs972871049 |
98 | S>I | No |
ClinGen TOPMed |
|
CA101672785 rs201116246 |
98 | S>R | No |
ClinGen TOPMed |
|
rs778437451 CA3013026 |
100 | D>G | No |
ClinGen ExAC gnomAD |
|
CA3013027 rs376715102 |
101 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3013030 rs200948051 |
102 | V>F | No |
ClinGen ExAC TOPMed gnomAD |
|
rs200948051 CA3013029 RCV000412974 |
102 | V>I | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
CA101672833 rs962336168 |
104 | P>R | No |
ClinGen Ensembl |
|
CA3013031 rs368809274 |
105 | N>D | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA101672843 rs368809274 |
105 | N>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
TCGA novel CA357678502 rs1579059266 |
106 | C>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA Ensembl |
CA3013034 rs768527455 |
107 | S>F | No |
ClinGen ExAC gnomAD |
|
CA3013033 rs749379015 |
107 | S>P | No |
ClinGen ExAC gnomAD |
|
rs199979749 CA3013035 |
108 | N>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs539162347 CA3013036 |
111 | Q>E | No |
ClinGen ExAC gnomAD |
|
CA357678656 rs1418932359 |
112 | E>G | No |
ClinGen TOPMed |
|
rs577058645 CA101672918 |
113 | K>E | No |
ClinGen 1000Genomes |
|
CA101672935 rs1055549708 |
114 | T>A | No |
ClinGen Ensembl |
|
CA101672950 rs545488452 |
115 | F>L | No |
ClinGen 1000Genomes gnomAD |
|
rs559024349 CA3013039 |
116 | N>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA101672956 rs949667789 |
116 | N>Y | No |
ClinGen Ensembl |
|
rs766134493 CA3013040 |
117 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
CA357678817 rs1303002858 |
118 | D>N | No |
ClinGen gnomAD |
|
rs1341387511 CA357678876 |
120 | V>L | No |
ClinGen gnomAD |
|
CA101672966 rs183431978 |
123 | V>L | No |
ClinGen 1000Genomes |
|
CA357680398 rs1256607861 |
124 | S>F | No |
ClinGen gnomAD |
|
rs770694110 CA3013063 |
126 | P>S | No |
ClinGen ExAC gnomAD |
|
CA3013065 rs759081519 |
131 | E>D | No |
ClinGen ExAC gnomAD |
|
CA3013066 rs764886010 |
132 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
rs780000495 CA101679811 |
133 | Q>* | No |
ClinGen Ensembl |
|
CA3013067 rs774881671 |
133 | Q>R | No |
ClinGen ExAC gnomAD |
|
CA101679859 VAR_028038 rs2664891 |
135 | L>F | No |
ClinGen UniProt TOPMed dbSNP gnomAD |
|
CA3013068 rs762344277 |
136 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1332914632 CA357680510 |
137 | T>S | No |
ClinGen TOPMed |
|
CA357680527 rs1165247469 |
138 | M>I | No |
ClinGen gnomAD |
|
RCV000905985 rs149019191 CA3013069 |
138 | M>V | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs750745764 CA3013070 |
139 | A>P | No |
ClinGen ExAC gnomAD |
|
rs2632398 VAR_028039 CA101679883 |
140 | R>C | No |
ClinGen UniProt TOPMed dbSNP gnomAD |
|
rs774748875 CA3013071 |
140 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs766583041 CA3013072 |
141 | R>S | No |
ClinGen ExAC gnomAD |
|
CA357680574 rs1560525396 |
142 | N>S | No |
ClinGen Ensembl |
|
CA357680580 rs754100136 |
143 | D>N | No |
ClinGen ExAC gnomAD |
|
CA3013073 rs754100136 |
143 | D>Y | No |
ClinGen ExAC gnomAD |
|
rs969607185 CA101679904 |
144 | D>G | No |
ClinGen TOPMed gnomAD |
|
rs1286975257 CA357680595 |
144 | D>N | No |
ClinGen TOPMed |
|
CA101679911 rs369651132 |
145 | I>T | No |
ClinGen ESP TOPMed |
|
CA101679939 rs925409123 |
151 | L>V | No |
ClinGen TOPMed |
|
rs1313402430 CA357680738 |
152 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
rs1392006165 CA357680745 |
153 | E>Q | No |
ClinGen gnomAD |
|
CA357680817 rs1288502454 |
156 | D>E | No |
ClinGen TOPMed gnomAD |
|
rs1315332861 CA357680822 |
157 | L>V | No |
ClinGen gnomAD |
|
rs746791930 CA3013079 |
173 | S>T | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 174 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA101680017 rs985794988 |
175 | N>S | No |
ClinGen gnomAD |
|
CA3013100 rs757279940 |
184 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1294382540 CA357681590 |
185 | S>N | No |
ClinGen TOPMed gnomAD |
|
CA3013102 rs745664747 |
187 | M>T | No |
ClinGen ExAC gnomAD |
|
CA3013104 rs375345716 |
191 | I>V | No |
ClinGen ESP ExAC gnomAD |
|
rs535745788 CA101682123 |
193 | A>V | No |
ClinGen Ensembl |
|
rs1014891672 CA101682136 |
197 | M>I | No |
ClinGen TOPMed |
|
CA357681746 rs1372565102 |
197 | M>K | No |
ClinGen TOPMed |
|
rs1203548067 CA357681763 |
199 | G>A | No |
ClinGen gnomAD |
|
rs1246981583 CA357681777 |
201 | A>G | No |
ClinGen gnomAD |
|
rs980211165 CA101685350 |
203 | G>V | No |
ClinGen TOPMed gnomAD |
|
rs1402579741 CA357682953 |
204 | G>R | No |
ClinGen gnomAD |
|
rs777188583 CA3013131 |
210 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1314126116 CA357683034 |
212 | S>Y | No |
ClinGen TOPMed |
|
CA357683044 rs1187791123 |
214 | S>P | No |
ClinGen TOPMed gnomAD |
|
CA357683067 rs1420750749 |
217 | Y>C | No |
ClinGen TOPMed |
|
CA357683084 rs1365846803 |
219 | E>A | No |
ClinGen TOPMed |
|
CA357683091 rs1384790579 |
220 | D>G | No |
ClinGen gnomAD |
|
CA3013134 rs775942312 |
224 | D>E | No |
ClinGen ExAC gnomAD |
|
rs1157576770 CA357683120 |
224 | D>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
rs1418958792 CA357683124 |
224 | D>V | No |
ClinGen TOPMed |
|
CA3013135 rs763042686 |
226 | Q>E | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1206394928 CA357683152 |
228 | I>M | No |
ClinGen gnomAD |
|
CA3013136 rs764379408 |
228 | I>V | No |
ClinGen ExAC gnomAD |
|
rs751635002 CA3013137 |
229 | K>Q | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 230 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA101685410 rs779551692 |
234 | D>N | No |
ClinGen Ensembl |
|
TCGA novel | 236 | G>= | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs753559198 CA3013162 |
236 | G>A | No |
ClinGen ExAC gnomAD |
|
CA357684181 rs1230553212 |
237 | E>A | No |
ClinGen TOPMed |
|
CA357684185 rs1304450461 |
237 | E>D | No |
ClinGen TOPMed gnomAD |
|
rs1300941072 CA357684186 |
238 | E>K | No |
ClinGen TOPMed |
|
CA3013165 rs370832123 |
240 | N>S | No |
ClinGen ESP ExAC TOPMed |
|
CA357684207 rs1306311010 |
241 | E>K | No |
ClinGen TOPMed |
|
CA357684216 rs1309771341 |
242 | S>P | No |
ClinGen gnomAD |
|
rs756518960 CA3013169 |
244 | E>A | No |
ClinGen ExAC gnomAD |
|
VAR_028040 CA101693453 rs3103117 |
245 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen UniProt Ensembl NCI-TCGA dbSNP |
rs11722476 VAR_028041 CA3013171 |
247 | S>N | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs768544433 CA3013173 |
249 | W>R | No |
ClinGen ExAC gnomAD |
|
rs772457471 CA3013175 |
250 | E>G | No |
ClinGen ExAC gnomAD |
|
rs748335254 CA3013174 |
250 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
rs773101703 CA3013176 |
253 | E>K | No |
ClinGen ExAC gnomAD |
|
rs1159550698 CA357684312 |
255 | I>M | No |
ClinGen TOPMed |
|
CA3013177 rs760824775 |
255 | I>V | No |
ClinGen ExAC gnomAD |
|
CA3013178 rs766219199 |
256 | V>I | No |
ClinGen ExAC gnomAD |
|
CA357684349 rs1288887455 |
261 | K>T | No |
ClinGen gnomAD |
|
CA357684358 rs1412232017 |
262 | E>A | No |
ClinGen gnomAD |
|
TCGA novel | 264 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1364704622 CA357684376 |
265 | N>D | No |
ClinGen gnomAD |
|
rs1409625376 CA357684397 |
267 | D>V | No |
ClinGen TOPMed |
|
rs759300612 CA3013180 |
268 | K>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
TCGA novel | 270 | E>= | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA357684456 rs1238382283 |
274 | V>E | No |
ClinGen TOPMed |
|
CA3013196 rs776591806 |
274 | V>I | No |
ClinGen ExAC gnomAD |
|
CA101694619 rs776591806 |
274 | V>L | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 275 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1378755495 CA357684469 |
276 | K>R | No |
ClinGen gnomAD |
|
CA357684507 rs1322361069 |
281 | M>V | No |
ClinGen TOPMed |
|
CA3013198 rs769726151 |
283 | T>A | No |
ClinGen ExAC gnomAD |
|
CA357684523 rs769726151 |
283 | T>P | No |
ClinGen ExAC gnomAD |
|
rs1315239841 CA357684529 |
284 | E>Q | No |
ClinGen gnomAD |
|
CA357684536 rs1315134384 |
285 | A>T | No |
ClinGen TOPMed |
|
rs1344902818 CA357684543 |
286 | L>V | No |
ClinGen gnomAD |
|
CA3013199 rs775205670 |
287 | E>Q | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 288 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 288 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs763651190 CA3013201 |
290 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1205341970 CA357684575 |
291 | V>L | No |
ClinGen gnomAD |
|
CA357684591 rs1403168907 |
293 | A>E | No |
ClinGen TOPMed gnomAD |
|
rs761206799 CA3013203 |
296 | Q>R | No |
ClinGen ExAC gnomAD |
|
rs372341021 CA3013215 |
298 | M>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs781265836 CA3013216 |
299 | Q>K | No |
ClinGen ExAC gnomAD |
|
CA357685089 rs1234267839 |
300 | Y>C | No |
ClinGen gnomAD |
|
VAR_028042 rs7439869 CA3013217 |
301 | V>A | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs996883018 CA101696278 |
301 | V>I | No |
ClinGen TOPMed gnomAD |
|
rs769704087 CA3013218 |
303 | Q>P | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3013219 rs775475567 |
304 | S>R | No |
ClinGen ExAC gnomAD |
|
CA357685149 rs1174954147 |
305 | E>A | No |
ClinGen TOPMed gnomAD |
|
CA357685166 rs1410940101 |
307 | P>A | No |
ClinGen gnomAD |
|
CA3013220 rs369454887 |
307 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3013221 rs768546456 |
310 | K>N | No |
ClinGen ExAC gnomAD |
|
rs1409398231 CA357685187 |
310 | K>R | No |
ClinGen gnomAD |
|
CA3013222 rs774037475 |
311 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1344142698 CA357685208 |
313 | S>F | No |
ClinGen TOPMed gnomAD |
|
rs559885724 CA3013224 |
315 | R>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs772793881 CA357685219 CA3013225 |
315 | R>S | No |
ClinGen ExAC gnomAD |
|
CA357685238 rs1339662620 |
318 | N>D | No |
ClinGen gnomAD |
|
CA3013226 rs760321641 |
318 | N>S | No |
ClinGen ExAC gnomAD |
|
CA3013227 rs765805221 |
320 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1490716081 CA357685251 |
320 | P>S | No |
ClinGen gnomAD |
|
rs1579209858 CA357685272 |
323 | A>T | No |
ClinGen Ensembl |
|
rs150825146 CA3013228 |
324 | T>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs772417263 CA101696405 |
329 | K>E | No |
ClinGen TOPMed |
|
TCGA novel | 332 | F>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1417757786 CA357685337 |
332 | F>S | No |
ClinGen gnomAD |
|
TCGA novel | 334 | M>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs201412452 CA3013232 |
334 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
TCGA novel | 336 | A>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA357685381 rs1579210047 |
338 | N>S | No |
ClinGen Ensembl |
|
CA357685385 rs1367680988 |
339 | G>S | No |
ClinGen gnomAD |
|
CA3013234 rs745941235 |
340 | F>L | No |
ClinGen ExAC gnomAD |
|
CA101696424 rs756229280 |
341 | N>K | No |
ClinGen ExAC gnomAD |
|
rs779946891 CA3013236 |
343 | K>N | No |
ClinGen ExAC gnomAD |
|
COSM198791 rs749176913 CA3013237 |
344 | R>C | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
CA3013239 rs200181471 |
344 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3013238 rs200181471 |
344 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA357685445 rs1315375597 |
347 | N>H | No |
ClinGen gnomAD |
|
rs754697669 | 347 | N>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
rs902106176 CA101696456 |
347 | N>S | No |
ClinGen Ensembl |
|
CA101696465 rs902106176 |
347 | N>T | No |
ClinGen Ensembl |
|
rs747912885 CA3013241 |
348 | V>I | No |
ClinGen ExAC gnomAD |
|
CA357685482 COSM1431836 rs1446006737 |
349 | F>S | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
CA101696474 rs35558307 |
350 | N>K | No |
ClinGen Ensembl |
|
VAR_028043 CA101696488 rs17854344 |
351 | P>Q | No |
ClinGen UniProt Ensembl dbSNP |
|
RCV000950398 rs139839410 CA3013242 |
351 | P>S | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs145303992 CA3013243 |
352 | K>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA357685536 rs1449315943 |
353 | R>K | No |
ClinGen TOPMed gnomAD |
|
rs1449315943 CA357685537 |
353 | R>T | No |
ClinGen TOPMed gnomAD |
|
CA3013244 rs760237788 |
355 | V>A | No |
ClinGen ExAC |
|
CA357685588 rs1184580576 |
357 | D>G | No |
ClinGen gnomAD |
|
CA3013245 rs373573803 |
358 | S>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1442960844 CA357685632 |
360 | Y>C | No |
ClinGen TOPMed gnomAD |
|
CA357685653 rs1162757852 |
361 | D>E | No |
ClinGen gnomAD |
|
rs776307895 CA3013246 |
362 | S>L | No |
ClinGen ExAC gnomAD |
|
rs764521045 CA3013248 |
363 | G>R | No |
ClinGen ExAC gnomAD |
|
CA357685673 rs1175878914 |
363 | G>V | No |
ClinGen TOPMed |
|
rs1386342255 CA357685687 |
365 | D>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
CA357685716 rs1434112799 |
366 | V>D | No |
ClinGen gnomAD |
|
CA3013250 rs757627876 |
367 | G>S | No |
ClinGen ExAC gnomAD |
|
CA3013251 rs767696967 |
368 | S>I | No |
ClinGen ExAC gnomAD |
|
CA357685764 rs1244303218 |
370 | L>R | No |
ClinGen TOPMed |
|
CA3013252 rs750694296 |
370 | L>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs756352035 CA357685798 |
372 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
CA357685814 rs1266847736 |
373 | D>V | No |
ClinGen gnomAD |
|
TCGA novel | 374 | Y>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1464786798 CA357685828 |
374 | Y>C | No |
ClinGen gnomAD |
|
TCGA novel | 375 | S>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1560541334 CA357685858 |
376 | S>G | No |
ClinGen Ensembl |
|
rs1245295463 CA357685887 |
377 | G>A | No |
ClinGen gnomAD |
|
CA101696591 rs886187757 |
381 | M>V | No |
ClinGen Ensembl |
|
CA357685997 rs1318929835 |
384 | G>D | No |
ClinGen TOPMed |
|
CA357685990 rs1471232317 |
384 | G>S | No |
ClinGen gnomAD |
|
CA357686166 rs1337172808 |
395 | D>N | No |
ClinGen gnomAD |
|
CA357686179 rs1408089946 |
396 | A>G | No |
ClinGen gnomAD |
|
rs199743897 CA357686187 |
398 | I>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs199743897 CA3013259 COSM3661271 |
398 | I>V | liver [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
CA357686193 rs1317084270 |
399 | G>S | No |
ClinGen TOPMed |
|
rs773160467 CA3013260 |
402 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
rs746616116 CA3013261 |
403 | L>S | No |
ClinGen ExAC |
|
rs558752166 CA101696636 |
405 | P>S | No |
ClinGen TOPMed |
|
TCGA novel | 406 | Q>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1265507784 CA357686288 |
413 | Q>K | No |
ClinGen gnomAD |
|
rs769200659 CA3013265 |
417 | E>Q | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 418 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1179157918 CA357686400 |
421 | F>L | No |
ClinGen gnomAD |
|
CA357686410 rs1251529353 |
421 | F>S | No |
ClinGen gnomAD |
|
CA101696680 rs932765231 |
422 | N>S | No |
ClinGen TOPMed |
|
rs1157613743 CA357686440 |
423 | S>N | No |
ClinGen TOPMed |
|
TCGA novel | 428 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs35489656 CA3013302 |
429 | T>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1430692509 CA357688536 |
431 | M>I | No |
ClinGen TOPMed |
|
rs376099012 CA101706536 |
435 | N>S | No |
ClinGen ESP TOPMed |
|
TCGA novel | 436 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA3013303 rs745463984 |
436 | G>S | No |
ClinGen ExAC gnomAD |
|
CA3013304 rs769519516 |
442 | I>L | No |
ClinGen ExAC gnomAD |
|
rs1560551856 CA357688611 |
442 | I>R | No |
ClinGen Ensembl |
|
CA101706543 rs929971004 |
443 | W>* | No |
ClinGen Ensembl |
|
CA357688616 rs1335850962 |
443 | W>L | No |
ClinGen gnomAD |
|
CA101706541 rs200569328 |
443 | W>R | No |
ClinGen TOPMed |
|
CA3013305 rs779364837 |
449 | I>L | No |
ClinGen ExAC gnomAD |
|
rs1208150704 CA357688660 |
449 | I>M | No |
ClinGen TOPMed |
|
TCGA novel | 452 | R>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 453 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs748810392 CA3013306 |
454 | V>I | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 455 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs773779610 CA3013308 |
456 | I>M | No |
ClinGen ExAC gnomAD |
|
rs1206623450 CA357688747 |
461 | K>N | No |
ClinGen gnomAD |
|
CA357688782 rs1461587526 |
466 | S>L | No |
ClinGen gnomAD |
|
CA3013313 rs765506477 |
475 | M>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs775415504 CA3013314 |
476 | L>I | No |
ClinGen ExAC gnomAD |
|
rs1339864110 CA357688863 |
478 | G>A | No |
ClinGen TOPMed |
|
rs201401547 CA101706604 |
478 | G>R | No |
ClinGen Ensembl |
|
CA3013315 rs369172332 |
479 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA357688882 rs1159041455 |
481 | G>D | No |
ClinGen gnomAD |
|
CA3013317 rs751594432 |
482 | G>R | No |
ClinGen ExAC gnomAD |
|
CA357688908 rs1321218870 |
485 | I>V | No |
ClinGen gnomAD |
|
rs750236630 CA3013320 |
488 | P>L | No |
ClinGen ExAC gnomAD |
|
CA3013321 rs755665740 |
489 | S>C | No |
ClinGen ExAC gnomAD |
|
rs755665740 CA357688939 |
489 | S>F | No |
ClinGen ExAC gnomAD |
|
rs779817379 CA3013322 |
490 | I>L | No |
ClinGen ExAC gnomAD |
|
rs2306802 CA357688965 |
493 | Q>H | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs1205474418 CA357675359 |
503 | V>I | No |
ClinGen gnomAD |
|
rs1205474418 CA357675361 |
503 | V>L | No |
ClinGen gnomAD |
|
rs1156927855 CA357675392 |
505 | L>F | No |
ClinGen TOPMed |
|
rs781754808 CA3013346 |
510 | L>F | No |
ClinGen ExAC gnomAD |
|
rs1379401348 CA357675557 |
514 | H>R | No |
ClinGen TOPMed gnomAD |
|
rs1270238144 CA357675548 |
514 | H>Y | No |
ClinGen gnomAD |
|
CA3013349 COSM217328 rs780585922 |
519 | I>V | liver [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
CA357675878 rs1579311919 |
527 | G>E | No |
ClinGen Ensembl |
|
CA357675902 rs1579311971 |
531 | Q>K | No |
ClinGen Ensembl |
|
CA357675917 rs1435546652 |
533 | I>V | No |
ClinGen gnomAD |
|
CA101660161 rs3113842 |
538 | Y>H | No |
ClinGen Ensembl |
|
rs749684131 CA3013368 |
540 | Y>C | No |
ClinGen ExAC gnomAD |
|
CA357675981 rs1579312114 |
542 | E>D | No |
ClinGen Ensembl |
|
rs779346888 CA3013370 |
542 | E>K | No |
ClinGen ExAC gnomAD |
|
rs748148546 CA101660197 |
544 | N>I | No |
ClinGen ExAC TOPMed gnomAD |
|
rs748148546 CA3013371 |
544 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1330347102 CA357675996 |
545 | N>D | No |
ClinGen gnomAD |
|
CA101660207 rs61741933 |
551 | V>G | No |
ClinGen Ensembl |
|
CA101660206 rs925841496 |
551 | V>I | No |
ClinGen TOPMed gnomAD |
|
rs760625348 CA3013374 |
557 | I>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs1579312264 CA357676072 |
557 | I>V | No |
ClinGen Ensembl |
|
TCGA novel | 562 | R>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA3013387 rs370363007 |
565 | N>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
rs772013442 CA101661118 |
566 | L>V | No |
ClinGen Ensembl |
|
CA3013389 rs543532635 |
570 | T>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs201690975 CA3013390 |
570 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1436820872 CA357676185 |
571 | L>S | No |
ClinGen TOPMed |
|
rs1409646546 CA357676195 COSM588867 |
572 | K>N | lung [Cosmic] | No |
ClinGen cosmic curated gnomAD |
rs1347832446 CA357676206 |
574 | L>H | No |
ClinGen TOPMed |
|
CA357676203 rs1201362993 |
574 | L>V | No |
ClinGen TOPMed |
|
rs148851766 CA3013391 |
575 | C>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
TCGA novel | 576 | Y>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs972221942 CA101661124 |
577 | Y>C | No |
ClinGen TOPMed |
|
CA101661278 rs770801956 |
583 | R>H | No |
ClinGen Ensembl |
|
rs3103135 CA101661285 |
589 | N>H | No |
ClinGen Ensembl |
|
rs1199339194 CA357676325 |
589 | N>S | No |
ClinGen gnomAD |
|
rs1379204368 CA357676340 |
591 | H>R | No |
ClinGen gnomAD |
|
rs753012478 CA3013412 |
593 | R>K | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1370724829 CA357676386 |
597 | Y>C | No |
ClinGen gnomAD |
|
CA3013414 rs777920671 |
598 | N>S | No |
ClinGen ExAC gnomAD |
|
CA357676445 rs1386012911 |
604 | Y>C | No |
ClinGen TOPMed |
|
CA357676469 rs1440635478 |
607 | A>V | No |
ClinGen gnomAD |
|
CA3013433 rs763264827 |
608 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3013435 rs751729733 |
610 | S>G | No |
ClinGen ExAC gnomAD |
|
CA3013436 rs757499753 |
611 | S>C | No |
ClinGen ExAC gnomAD |
|
rs1247073980 CA357676502 |
612 | D>E | No |
ClinGen gnomAD |
|
CA357676504 rs1267145843 |
613 | D>N | No |
ClinGen gnomAD |
|
CA357676514 rs1189321599 |
614 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
CA357676513 rs1189321599 |
614 | R>G | No |
ClinGen TOPMed gnomAD |
|
rs750514840 CA3013438 |
614 | R>H | No |
ClinGen ExAC TOPMed |
|
CA357676524 rs1197654465 |
615 | S>R | No |
ClinGen TOPMed |
|
rs1432986576 CA357676550 |
620 | L>Q | No |
ClinGen TOPMed |
|
CA3013442 rs768385881 |
625 | A>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs768385881 CA101662643 |
625 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
TCGA novel | 627 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA357676628 rs1166204678 |
631 | H>R | No |
ClinGen gnomAD |
|
TCGA novel | 634 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs772794075 CA3013446 |
635 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1391340863 CA357676670 |
637 | G>S | No |
ClinGen gnomAD |
|
rs1053673489 CA101662686 |
638 | S>C | No |
ClinGen Ensembl |
|
rs1433348876 CA357676683 |
639 | I>V | No |
ClinGen gnomAD |
|
rs151125076 CA3013448 |
643 | H>Y | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs775908103 CA3013449 |
645 | M>T | No |
ClinGen ExAC gnomAD |
|
rs773473258 CA3013475 |
649 | A>V | No |
ClinGen ExAC |
|
CA3013476 rs760981274 |
652 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
CA101663342 rs866232826 |
652 | R>S | No |
ClinGen Ensembl |
|
rs766331484 CA3013477 |
658 | T>I | No |
ClinGen ExAC gnomAD |
|
rs1174290720 CA357676824 |
659 | P>T | No |
ClinGen gnomAD |
|
rs753959232 CA3013478 |
660 | V>I | No |
ClinGen ExAC gnomAD |
|
rs1358805678 CA357676958 |
678 | M>V | No |
ClinGen TOPMed |
|
rs1439996220 CA357676975 |
680 | S>G | No |
ClinGen gnomAD |
|
CA3013482 rs528568208 |
681 | S>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs752956662 CA101663395 |
681 | S>N | No |
ClinGen Ensembl |
|
CA357676986 rs1368124180 |
681 | S>R | No |
ClinGen gnomAD |
|
CA3013483 rs758314184 |
682 | S>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1421308896 CA357677021 |
686 | I>T | No |
ClinGen TOPMed |
|
TCGA novel | 687 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA357677028 rs1378204418 |
687 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
rs1300826479 CA357677037 |
689 | M>V | No |
ClinGen gnomAD |
|
TCGA novel | 692 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA357677106 rs1475126679 |
697 | A>T | No |
ClinGen gnomAD |
|
TCGA novel | 697 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA101664256 rs931874180 |
698 | D>N | No |
ClinGen TOPMed |
|
TCGA novel | 699 | E>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1414469031 CA357677123 |
699 | E>V | No |
ClinGen gnomAD |
|
CA357677145 rs1371008351 |
702 | I>K | No |
ClinGen gnomAD |
|
rs1169112891 CA357677143 |
702 | I>V | No |
ClinGen TOPMed gnomAD |
|
CA357677151 rs1467225165 |
703 | Y>H | No |
ClinGen gnomAD |
|
CA3013507 rs575801541 |
706 | E>D | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA357677174 rs1407056951 |
706 | E>Q | No |
ClinGen gnomAD |
|
TCGA novel | 718 | F>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA357677281 rs1358344630 |
721 | R>K | No |
ClinGen TOPMed |
|
rs1324262980 CA357677293 |
723 | V>I | No |
ClinGen gnomAD |
|
CA3013520 rs375467421 |
729 | K>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
RCV000888974 rs138860144 CA3013523 |
733 | P>A | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA357677379 rs1230643946 |
733 | P>L | No |
ClinGen TOPMed gnomAD |
|
COSM258060 rs761708730 CA3013524 |
737 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
CA101664435 rs868015422 |
738 | I>T | No |
ClinGen Ensembl |
|
TCGA novel | 739 | E>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA3013527 rs755795846 |
745 | E>K | No |
ClinGen ExAC gnomAD |
|
rs1256746627 CA357677484 |
748 | E>A | No |
ClinGen gnomAD |
|
rs1483319497 CA357677487 |
748 | E>D | No |
ClinGen gnomAD |
|
rs1256746627 CA357677486 |
748 | E>V | No |
ClinGen gnomAD |
|
rs753363574 CA3013529 |
749 | Q>H | No |
ClinGen ExAC gnomAD |
|
CA3013531 rs758897655 |
753 | G>C | No |
ClinGen ExAC gnomAD |
|
CA3013530 rs758897655 |
753 | G>S | No |
ClinGen ExAC gnomAD |
|
RCV001253615 CA357677529 rs1306010332 |
755 | F>L | No |
ClinGen ClinVar dbSNP gnomAD |
|
rs1001956167 CA101664524 |
756 | N>D | No |
ClinGen Ensembl |
|
CA3013532 rs142593051 |
756 | N>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs1426748985 CA357677567 |
760 | K>R | No |
ClinGen gnomAD |
|
CA357677582 rs1311689894 |
762 | I>M | No |
ClinGen gnomAD |
|
CA3013533 rs371198232 |
762 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1371744926 CA357677586 |
763 | N>S | No |
ClinGen TOPMed gnomAD |
|
rs1369650190 CA357677596 |
764 | N>I | No |
ClinGen TOPMed |
|
TCGA novel | 765 | L>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs750056186 | 768 | N>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 768 | N>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1369196933 CA357677662 |
769 | T>I | No |
ClinGen TOPMed gnomAD |
|
CA357677669 rs1258974023 |
770 | E>D | No |
ClinGen gnomAD |
|
CA357677667 rs1298590403 |
770 | E>G | No |
ClinGen gnomAD |
|
CA357677677 rs1344491826 |
771 | M>I | No |
ClinGen gnomAD |
|
CA357677684 rs754527654 |
772 | C>F | No |
ClinGen ExAC gnomAD |
|
CA3013549 rs754527654 |
772 | C>Y | No |
ClinGen ExAC gnomAD |
|
rs1579338099 CA357677691 |
773 | N>S | No |
ClinGen Ensembl |
|
CA101664732 rs112326108 |
774 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
rs778305458 CA3013550 |
774 | V>I | No |
ClinGen ExAC gnomAD |
|
CA101664740 rs752062564 |
777 | Q>H | No |
ClinGen ExAC gnomAD |
|
rs1274851786 CA357677729 |
778 | L>F | No |
ClinGen gnomAD |
|
rs1436098748 CA357677779 |
785 | P>S | No |
ClinGen TOPMed |
|
CA3013552 rs757705893 |
788 | H>Y | No |
ClinGen ExAC gnomAD |
|
CA3013553 rs781559336 |
789 | R>S | No |
ClinGen ExAC gnomAD |
|
CA101664754 rs975789003 |
790 | Q>R | No |
ClinGen TOPMed gnomAD |
|
rs780463117 CA3013556 |
794 | A>S | No |
ClinGen ExAC gnomAD |
|
CA357677842 rs1484136152 |
794 | A>V | No |
ClinGen TOPMed |
|
rs1373042201 CA357677882 |
800 | M>V | No |
ClinGen gnomAD |
|
rs749356198 CA357677905 |
803 | L>F | No |
ClinGen ExAC gnomAD |
|
rs749356198 CA3013557 |
803 | L>V | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 808 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1027092029 CA101666142 |
808 | P>T | No |
ClinGen TOPMed |
|
CA357678318 rs1416243942 |
810 | H>Y | No |
ClinGen gnomAD |
|
CA357678342 rs767950479 |
811 | C>F | No |
ClinGen ExAC TOPMed gnomAD |
|
rs767950479 CA3013574 |
811 | C>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
CA357678396 rs1190780708 |
814 | N>D | No |
ClinGen TOPMed |
|
rs138326521 CA101666175 |
815 | P>A | No |
ClinGen ESP ExAC gnomAD |
|
CA3013576 rs138326521 |
815 | P>S | No |
ClinGen ESP ExAC gnomAD |
|
rs563304673 CA3013577 |
816 | D>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA357678490 rs1237354316 |
819 | F>L | No |
ClinGen TOPMed |
|
CA101666217 rs895123297 |
820 | E>D | No |
ClinGen Ensembl |
|
CA357678494 rs1403069906 |
820 | E>Q | No |
ClinGen gnomAD |
|
CA101666241 rs1025413412 |
822 | M>I | No |
ClinGen Ensembl |
|
CA3013578 rs377604717 CA357678585 |
823 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA101666255 rs79308346 |
825 | M>L | No |
ClinGen Ensembl |
|
rs778999358 CA3013580 |
832 | V>I | No |
ClinGen ExAC gnomAD |
|
rs1317452692 CA357678809 |
835 | K>R | No |
ClinGen TOPMed gnomAD |
|
CA3013583 rs200626666 |
838 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3013585 rs373034529 |
841 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs958239996 CA101666319 |
843 | F>L | No |
ClinGen gnomAD |
|
CA3013586 CA3013587 rs776444789 |
844 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
CA357678981 rs989618306 CA101666357 |
847 | M>I | No |
ClinGen TOPMed |
|
rs147230441 CA3013588 |
847 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
rs775036233 CA3013589 |
848 | D>E | No |
ClinGen ExAC gnomAD |
|
rs377400815 CA3013590 |
857 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3013591 rs768125147 |
860 | G>A | No |
ClinGen ExAC |
|
CA357679073 rs1158666263 |
861 | C>Y | No |
ClinGen gnomAD |
|
rs756693746 CA3013593 |
867 | K>R | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 868 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs921733032 CA101666381 |
868 | Q>R | No |
ClinGen TOPMed |
|
TCGA novel | 869 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA101667212 rs1046452240 |
873 | V>I | No |
ClinGen Ensembl |
|
TCGA novel | 880 | T>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs754196866 CA3013612 |
885 | I>V | No |
ClinGen ExAC gnomAD |
|
rs1281085965 CA357679260 |
886 | L>V | No |
ClinGen gnomAD |
|
rs267600302 COSM13923 CA101667285 |
888 | V>D | skin [Cosmic] | No |
ClinGen cosmic curated Ensembl |
rs199718824 CA3013614 |
892 | H>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs1450182385 CA357679312 |
893 | H>L | No |
ClinGen gnomAD |
|
rs752800094 CA3013615 |
893 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3013616 rs138356072 |
894 | Q>H | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA357679331 rs1412449811 |
896 | R>K | No |
ClinGen TOPMed |
|
CA357679361 rs1560568330 |
900 | L>* | No |
ClinGen Ensembl |
|
CA3013645 rs763142008 |
913 | I>N | No |
ClinGen ExAC gnomAD |
|
rs1206007756 CA357679476 |
915 | E>K | No |
ClinGen TOPMed |
|
CA3013647 rs751635784 |
918 | T>A | No |
ClinGen ExAC gnomAD |
|
rs771184889 CA3013649 |
919 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
CA357679513 rs1185689986 |
920 | M>V | No |
ClinGen gnomAD |
|
rs756107825 CA3013651 |
921 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
CA101669086 rs968875276 |
921 | D>Y | No |
ClinGen Ensembl |
|
rs778772656 CA3013655 |
933 | G>R | No |
ClinGen ExAC gnomAD |
|
CA357679814 rs1312790254 |
945 | I>M | No |
ClinGen gnomAD |
|
CA3013658 rs772778426 |
948 | D>H | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 948 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 949 | I>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA357679941 rs1278015436 |
954 | Y>C | No |
ClinGen gnomAD |
|
TCGA novel | 963 | C>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs150777961 CA3013661 |
969 | T>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs17857297 VAR_028044 CA101671131 |
972 | V>A | No |
ClinGen UniProt Ensembl dbSNP |
|
CA3013676 rs747733445 |
975 | I>T | No |
ClinGen ExAC gnomAD |
|
CA3013680 rs139130080 |
981 | G>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3013679 CA357680594 rs191254950 |
981 | G>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA3013682 rs749812122 |
983 | I>T | No |
ClinGen ExAC gnomAD |
|
rs768942719 CA3013683 |
986 | S>T | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 990 | I>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 991 | N>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA357680765 rs1254413939 |
995 | L>F | No |
ClinGen gnomAD |
|
rs1273335234 CA357680775 |
996 | K>R | No |
ClinGen gnomAD |
|
TCGA novel | 998 | E>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 1001 | M>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1247529092 CA357680858 |
1003 | T>A | No |
ClinGen TOPMed |
|
CA357680865 rs1374173184 |
1003 | T>I | No |
ClinGen gnomAD |
|
CA357681217 rs1282802642 |
1008 | D>V | No |
ClinGen TOPMed |
|
CA357681244 rs1223506986 |
1010 | G>E | No |
ClinGen TOPMed |
|
rs1457637247 CA357681286 |
1012 | M>I | No |
ClinGen gnomAD |
|
rs1289651944 CA357681293 |
1013 | P>A | No |
ClinGen gnomAD |
|
rs1387316964 CA357681299 |
1013 | P>L | No |
ClinGen gnomAD |
|
rs1317692420 CA357681436 |
1024 | M>I | No |
ClinGen TOPMed |
|
rs61755304 CA3013703 |
1024 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs61755304 CA101675228 |
1024 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
3 associated diseases with Q9H4L7
[MIM: 136000]: Adermatoglyphia (ADERM)
An autosomal dominant condition characterized by the lack of epidermal ridges on the palms and soles, which results in the absence of fingerprints, and is associated with a reduced number of sweat gland openings and reduced sweating of palms and soles. {ECO:0000269|PubMed:21820097, ECO:0000269|PubMed:24909267}. Note=The disease is caused by variants affecting the gene represented in this entry. Splice site mutations causing aberrant splicing of skin-specific isoform 3 are likely to exert a loss-of-function effect and are involved in ADERM. {ECO:0000269|PubMed:21820097, ECO:0000269|PubMed:24909267}.
[MIM: 129200]: Basan syndrome (BSNS)
An autosomal dominant form of adermatoglyphia associated with congenital facial milia, acral blistering, digital contractures, and nail abnormalities. Adermatoglyphia is defined by the lack of epidermal ridges on the palms and soles, which results in the absence of fingerprints. {ECO:0000269|PubMed:24664640, ECO:0000269|PubMed:26932190}. Note=The disease is caused by variants affecting the gene represented in this entry. Splice site mutations causing aberrant splicing of skin-specific isoform 3 are likely to exert a loss-of-function effect and are involved in BSNS. {ECO:0000269|PubMed:24664640, ECO:0000269|PubMed:26932190}.
[MIM: 181600]: Huriez syndrome (HRZ)
An autosomal dominant syndrome characterized by atrophic fibrosis of the skin of the limbs, nail hypoplasia, and palmoplantar keratoderma. Malignant degeneration of affected skin resulting in aggressive squamous cell carcinoma and early metastasis formation is a distinctive feature of the syndrome. {ECO:0000269|PubMed:29409814}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- An autosomal dominant condition characterized by the lack of epidermal ridges on the palms and soles, which results in the absence of fingerprints, and is associated with a reduced number of sweat gland openings and reduced sweating of palms and soles. {ECO:0000269|PubMed:21820097, ECO:0000269|PubMed:24909267}. Note=The disease is caused by variants affecting the gene represented in this entry. Splice site mutations causing aberrant splicing of skin-specific isoform 3 are likely to exert a loss-of-function effect and are involved in ADERM. {ECO:0000269|PubMed:21820097, ECO:0000269|PubMed:24909267}.
- An autosomal dominant form of adermatoglyphia associated with congenital facial milia, acral blistering, digital contractures, and nail abnormalities. Adermatoglyphia is defined by the lack of epidermal ridges on the palms and soles, which results in the absence of fingerprints. {ECO:0000269|PubMed:24664640, ECO:0000269|PubMed:26932190}. Note=The disease is caused by variants affecting the gene represented in this entry. Splice site mutations causing aberrant splicing of skin-specific isoform 3 are likely to exert a loss-of-function effect and are involved in BSNS. {ECO:0000269|PubMed:24664640, ECO:0000269|PubMed:26932190}.
- An autosomal dominant syndrome characterized by atrophic fibrosis of the skin of the limbs, nail hypoplasia, and palmoplantar keratoderma. Malignant degeneration of affected skin resulting in aggressive squamous cell carcinoma and early metastasis formation is a distinctive feature of the syndrome. {ECO:0000269|PubMed:29409814}. Note=The disease is caused by variants affecting the gene represented in this entry.
5 regional properties for Q9H4L7
Type | Name | Position | InterPro Accession |
---|---|---|---|
domain | SNF2, N-terminal | 513 - 785 | IPR000330 |
domain | Helicase, C-terminal | 857 - 1010 | IPR001650 |
domain | Ubiquitin system component CUE | 157 - 199 | IPR003892-1 |
domain | Ubiquitin system component CUE | 251 - 294 | IPR003892-2 |
domain | Helicase superfamily 1/2, ATP-binding domain | 493 - 687 | IPR014001 |
Functions
Description | ||
---|---|---|
EC Number | 3.6.4.12 | Acting on ATP; involved in cellular and subcellular movement |
Subcellular Localization |
|
|
PANTHER Family | ||
PANTHER Subfamily | ||
PANTHER Protein Class | ||
PANTHER Pathway Category | No pathway information available |
5 GO annotations of cellular component
Name | Definition |
---|---|
heterochromatin | A compact and highly condensed form of chromatin that is refractory to transcription. |
nuclear replication fork | The Y-shaped region of a nuclear replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes. |
nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
site of double-strand break | A region of a chromosome at which a DNA double-strand break has occurred. DNA damage signaling and repair proteins accumulate at the lesion to respond to the damage and repair the DNA to form a continuous DNA helix. |
8 GO annotations of molecular function
Name | Definition |
---|---|
ATP binding | Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
ATP hydrolysis activity | Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient. |
ATP-dependent activity, acting on DNA | Catalytic activity that acts to modify DNA, driven by ATP hydrolysis. |
ATP-dependent chromatin remodeler activity | An activity, driven by ATP hydrolysis, that modulates the contacts between histones and DNA, resulting in a change in chromosome architecture within the nucleosomal array, leading to chromatin remodeling. |
chromatin binding | Binding to chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
DNA helicase activity | Unwinding of a DNA helix, driven by ATP hydrolysis. |
ubiquitin binding | Binding to ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation. |
6 GO annotations of biological process
Name | Definition |
---|---|
chromatin remodeling | A dynamic process of chromatin reorganization resulting in changes to chromatin structure. These changes allow DNA metabolic processes such as transcriptional regulation, DNA recombination, DNA repair, and DNA replication. |
chromosome separation | The cell cycle process in which paired chromosomes are detached from each other. Chromosome separation begins with the release of cohesin complexes from chromosomes; in budding yeast, this includes the cleavage of cohesin complexes along the chromosome arms, followed by the separation of the centromeric regions. Chromosome separation also includes formation of chromatid axes mediated by condensins, and ends with the disentangling of inter-sister catenation catalyzed by topoisomerase II (topo II). |
DNA double-strand break processing | The 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang. |
histone H3 deacetylation | The modification of histone H3 by the removal of one or more acetyl groups. |
histone H4 deacetylation | The modification of histone H4 by the removal of one or more acetyl groups. |
regulation of DNA recombination | Any process that modulates the frequency, rate or extent of DNA recombination, a DNA metabolic process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. |
4 homologous proteins in AiPD
UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
---|---|---|---|---|
P31380 | FUN30 | ATP-dependent helicase FUN30 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
Q9VL72 | Etl1 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 homolog | Drosophila melanogaster (Fruit fly) | PR |
P28370 | SMARCA1 | Probable global transcription activator SNF2L1 | Homo sapiens (Human) | SS |
O60264 | SMARCA5 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 | Homo sapiens (Human) | EV |
10 | 20 | 30 | 40 | 50 | 60 |
MNLFNLDRFR | FEKRNKIEEA | PEATPQPSQP | GPSSPISLSA | EEENAEGEVS | RANTPDSDIT |
70 | 80 | 90 | 100 | 110 | 120 |
EKTEDSSVPE | TPDNERKASI | SYFKNQRGIQ | YIDLSSDSED | VVSPNCSNTV | QEKTFNKDTV |
130 | 140 | 150 | 160 | 170 | 180 |
IIVSEPSEDE | ESQGLPTMAR | RNDDISELED | LSELEDLKDA | KLQTLKELFP | QRSDNDLLKL |
190 | 200 | 210 | 220 | 230 | 240 |
IESTSTMDGA | IAAALLMFGD | AGGGPRKRKL | SSSSEPYEED | EFNDDQSIKK | TRLDHGEESN |
250 | 260 | 270 | 280 | 290 | 300 |
ESAESSSNWE | KQESIVLKLQ | KEFPNFDKQE | LREVLKEHEW | MYTEALESLK | VFAEDQDMQY |
310 | 320 | 330 | 340 | 350 | 360 |
VSQSEVPNGK | EVSSRSQNYP | KNATKTKLKQ | KFSMKAQNGF | NKKRKKNVFN | PKRVVEDSEY |
370 | 380 | 390 | 400 | 410 | 420 |
DSGSDVGSSL | DEDYSSGEEV | MEDGYKGKIL | HFLQDASIGE | LTLIPQCSQK | KAQKITELRP |
430 | 440 | 450 | 460 | 470 | 480 |
FNSWEALFTK | MSKTNGLSED | LIWHCKTLIQ | ERDVVIRLMN | KCEDISNKLT | KQVTMLTGNG |
490 | 500 | 510 | 520 | 530 | 540 |
GGWNIEQPSI | LNQSLSLKPY | QKVGLNWLAL | VHKHGLNGIL | ADEMGLGKTI | QAIAFLAYLY |
550 | 560 | 570 | 580 | 590 | 600 |
QEGNNGPHLI | VVPASTIDNW | LREVNLWCPT | LKVLCYYGSQ | EERKQIRFNI | HSRYEDYNVI |
610 | 620 | 630 | 640 | 650 | 660 |
VTTYNCAISS | SDDRSLFRRL | KLNYAIFDEG | HMLKNMGSIR | YQHLMTINAN | NRLLLTGTPV |
670 | 680 | 690 | 700 | 710 | 720 |
QNNLLELMSL | LNFVMPHMFS | SSTSEIRRMF | SSKTKSADEQ | SIYEKERIAH | AKQIIKPFIL |
730 | 740 | 750 | 760 | 770 | 780 |
RRVKEEVLKQ | LPPKKDRIEL | CAMSEKQEQL | YLGLFNRLKK | SINNLEKNTE | MCNVMMQLRK |
790 | 800 | 810 | 820 | 830 | 840 |
MANHPLLHRQ | YYTAEKLKEM | SQLMLKEPTH | CEANPDLIFE | DMEVMTDFEL | HVLCKQYRHI |
850 | 860 | 870 | 880 | 890 | 900 |
NNFQLDMDLI | LDSGKFRVLG | CILSELKQKG | DRVVLFSQFT | MMLDILEVLL | KHHQHRYLRL |
910 | 920 | 930 | 940 | 950 | 960 |
DGKTQISERI | HLIDEFNTDM | DIFVFLLSTK | AGGLGINLTS | ANVVILHDID | CNPYNDKQAE |
970 | 980 | 990 | 1000 | 1010 | 1020 |
DRCHRVGQTK | EVLVIKLISQ | GTIEESMLKI | NQQKLKLEQD | MTTVDEGDEG | SMPADIATLL |
KTSMGL |