Q9FE79
Gene name |
RABA4C (SMG1, At5g47960, K16F13.4) |
Protein name |
Ras-related protein RABA4c |
Names |
AtRABA4c, Ras-related protein SMG1 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT5G47960 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q9FE79
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q9FE79-F1 | Predicted | AlphaFoldDB |
12 variants for Q9FE79
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| ENSVATH07365871 | 77 | Y>H | No | 1000Genomes | |
| ENSVATH07365869 | 89 | V>L | No | 1000Genomes | |
| tmp_5_19421926_T_A | 93 | L>F | No | 1000Genomes | |
| ENSVATH07365865 | 137 | A>S | No | 1000Genomes | |
| tmp_5_19421784_C_A | 141 | E>* | No | 1000Genomes | |
| tmp_5_19421697_G_C | 170 | L>V | No | 1000Genomes | |
| ENSVATH07365863 | 171 | T>M | No | 1000Genomes | |
| ENSVATH12616170 | 174 | T>K | No | 1000Genomes | |
| ENSVATH12616167 | 213 | E>D | No | 1000Genomes | |
| tmp_5_19421564_G_A | 214 | S>F | No | 1000Genomes | |
| ENSVATH03384782 | 215 | K>R | No | 1000Genomes | |
| ENSVATH03384780 | 222 | T>R | No | 1000Genomes |
No associated diseases with Q9FE79
1 regional properties for Q9FE79
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| domain | Small GTP-binding protein domain | 15 - 169 | IPR005225 |
4 GO annotations of cellular component
| Name | Definition |
|---|---|
| endosome | A vacuole to which materials ingested by endocytosis are delivered. |
| Golgi apparatus | A membrane-bound cytoplasmic organelle of the endomembrane system that further processes the core oligosaccharides (e.g. N-glycans) added to proteins in the endoplasmic reticulum and packages them into membrane-bound vesicles. The Golgi apparatus operates at the intersection of the secretory, lysosomal, and endocytic pathways. |
| plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
| plastid | Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid. |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| GTP binding | Binding to GTP, guanosine triphosphate. |
| GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + H+ + phosphate. |
1 GO annotations of biological process
| Name | Definition |
|---|---|
| protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
24 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q3MHP2 | RAB11B | Ras-related protein Rab-11B | Bos taurus (Bovine) | PR |
| Q2TA29 | RAB11A | Ras-related protein Rab-11A | Bos taurus (Bovine) | PR |
| Q5ZJN2 | RAB11A | Ras-related protein Rab-11A | Gallus gallus (Chicken) | PR |
| Q5ZHV1 | RAB33B | Ras-related protein Rab-33B | Gallus gallus (Chicken) | PR |
| P62490 | RAB11A | Ras-related protein Rab-11A | Canis lupus familiaris (Dog) (Canis familiaris) | PR |
| P62491 | RAB11A | Ras-related protein Rab-11A | Homo sapiens (Human) | PR |
| Q15907 | RAB11B | Ras-related protein Rab-11B | Homo sapiens (Human) | PR |
| Q96AX2 | RAB37 | Ras-related protein Rab-37 | Homo sapiens (Human) | PR |
| Q9H082 | RAB33B | Ras-related protein Rab-33B | Homo sapiens (Human) | PR |
| P46638 | Rab11b | Ras-related protein Rab-11B | Mus musculus (Mouse) | PR |
| P62492 | Rab11a | Ras-related protein Rab-11A | Mus musculus (Mouse) | PR |
| Q9JKM7 | Rab37 | Ras-related protein Rab-37 | Mus musculus (Mouse) | PR |
| O35963 | Rab33b | Ras-related protein Rab-33B | Mus musculus (Mouse) | PR |
| Q52NJ1 | RAB11A | Ras-related protein Rab-11A | Sus scrofa (Pig) | PR |
| O35509 | Rab11b | Ras-related protein Rab-11B | Rattus norvegicus (Rat) | PR |
| P62494 | Rab11a | Ras-related protein Rab-11A | Rattus norvegicus (Rat) | PR |
| P25766 | RGP1 | Ras-related protein RGP1 | Oryza sativa subsp japonica (Rice) | PR |
| Q20365 | rab-33 | Ras-related protein Rab-33 | Caenorhabditis elegans | PR |
| O04486 | RABA2A | Ras-related protein RABA2a | Arabidopsis thaliana (Mouse-ear cress) | PR |
| O49513 | RABA1E | Ras-related protein RABA1e | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LH50 | RABA4D | Ras-related protein RABA4d | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LNK1 | RABA3 | Ras-related protein RABA3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9LNW1 | RABA2B | Ras-related protein RABA2b | Arabidopsis thaliana (Mouse-ear cress) | PR |
| Q9SJZ5 | RABA4E | Putative Ras-related protein RABA4e | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MSKFQSNFNQ | KIDYVFKVVL | IGDSAVGKSQ | LLARFSRNEF | SIESKATIGV | EFQTRTLEID |
| 70 | 80 | 90 | 100 | 110 | 120 |
| RKTIKAQIWD | TAGQERYRAV | TSAYYRGAVG | AMLVYDITKR | QSFDHVARWL | EELRGHADKN |
| 130 | 140 | 150 | 160 | 170 | 180 |
| IVIMLIGNKT | DLGTLRAVPT | EDAKEFAQRE | NLFFMETSAL | DSNNVEPSFL | TVLTEIYRIV |
| 190 | 200 | 210 | 220 | ||
| SKKNLVANEE | GESGGDSSLL | QGTKIVVAGE | ETESKGKGCC | GTS |