Q96J02
Gene name |
ITCH |
Protein name |
E3 ubiquitin-protein ligase Itchy homolog |
Names |
Itch, Atrophin-1-interacting protein 4, AIP4, HECT-type E3 ubiquitin transferase Itchy homolog, NFE2-associated polypeptide 1, NAPP1 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:83737 |
EC number |
2.3.2.26: Aminoacyltransferases |
Protein Class |
HECT DOMAIN UBIQUITIN-PROTEIN LIGASE (PTHR11254) |

Descriptions
E3 ubiquitin-protein ligase Itchy homolog protein (ITCH) is a HECT domain E3 ubiquitin ligase, belonging to the NEDD4 family. It plays a crucial role in regulating proteolysis and various cellular processes by targeting specific proteins for ubiquitination and subsequent degradation. Similar with other NEDD4 families such as WWP2, ITCH is autoinhibited through interactions between the WW2-WW3 linker and the HECT domain, resulting in a closed and inactive conformation. Deletion of the WW2-WW3 linker from ITCH sharply increases autoubiquitination activity compared to full-length ITCH. Binding of PPxY motif-containing proteins, such as NDFIP1, to the WW domain disrupts the autoinhibited form of ITCH and enhances its catalytic activity.
Autoinhibitory domains (AIDs)
Target domain |
548-903 (HECT domain) |
Relief mechanism |
Partner binding |
Assay |
Deletion assay, Mutagenesis experiment |
Accessory elements
No accessory elements
References
- Mund T et al. (2009) "Control of the activity of WW-HECT domain E3 ubiquitin ligases by NDFIP proteins", EMBO reports, 10, 501-7
- Wiesner S et al. (2007) "Autoinhibition of the HECT-type ubiquitin ligase Smurf2 through its C2 domain", Cell, 130, 651-62
- Tsunoda T et al. (2022) "ENTREP/FAM189A2 encodes a new ITCH ubiquitin ligase activator that is downregulated in breast cancer", EMBO reports, 23, e51182
- Chen Z et al. (2017) "A Tunable Brake for HECT Ubiquitin Ligases", Molecular cell, 66, 345-357.e6
Autoinhibited structure

Activated structure

13 structures for Q96J02
Entry ID | Method | Resolution | Chain | Position | Source |
---|---|---|---|---|---|
2DMV | NMR | - | A | 328-357 | PDB |
2KYK | NMR | - | A | 359-392 | PDB |
2NQ3 | X-ray | 180 A | A | 1-155 | PDB |
2P4R | X-ray | 200 A | T | 246-270 | PDB |
2YSF | NMR | - | A | 480-512 | PDB |
3TUG | X-ray | 227 A | A | 524-903 | PDB |
4ROF | X-ray | 203 A | A/B | 436-474 | PDB |
5C7M | X-ray | 303 A | A | 524-899 | PDB |
5CQ2 | X-ray | 140 A | A | 433-521 | PDB |
5DWS | X-ray | 165 A | A/C/E/G | 436-474 | PDB |
5DZD | X-ray | 157 A | A/B | 475-514 | PDB |
5SXP | X-ray | 165 A | F/G | 249-269 | PDB |
AF-Q96J02-F1 | Predicted | AlphaFoldDB |
435 variants for Q96J02
Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
---|---|---|---|---|---|
RCV001196864 rs2038572425 |
9 | G>R | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinVar dbSNP |
RCV000704773 rs373940007 CA9821235 |
28 | K>R | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
rs1978516186 RCV001228814 |
69 | L>F | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinVar dbSNP |
rs587776592 RCV000004641 |
132 | I>missing | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinVar dbSNP |
rs149625278 CA9821308 RCV000648215 |
156 | C>Y | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
rs1983332740 RCV001255428 |
243 | L>missing | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinVar dbSNP |
CA9821414 rs773997755 RCV000648211 |
273 | S>A | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
CA9821839 RCV000706454 rs139633287 COSM577047 |
680 | I>V | lung Syndromic multisystem autoimmune disease due to ITCH deficiency [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar ESP ExAC TOPMed dbSNP gnomAD |
RCV001194604 rs1988702062 |
693 | E>* | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinVar dbSNP |
rs1381447036 RCV001255429 |
710 | E>missing | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinVar dbSNP |
rs1568998827 CA408672571 RCV001329453 |
793 | W>* | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
CA408673194 rs1234261647 RCV000697503 |
804 | R>S | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
rs767087220 CA9821975 RCV000695190 |
859 | V>I | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
rs1978326856 RCV001240180 |
902 | Q>* | Syndromic multisystem autoimmune disease due to ITCH deficiency [ClinVar] | Yes |
ClinVar dbSNP |
rs1245034082 CA408660595 |
2 | S>F | No |
ClinGen gnomAD |
|
rs764016207 CA9821207 |
4 | S>G | No |
ClinGen ExAC TOPMed gnomAD |
|
CA408660611 rs1194377363 |
5 | G>R | No |
ClinGen TOPMed gnomAD |
|
rs751414549 CA9821208 |
6 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1262792868 CA408660624 |
7 | Q>* | No |
ClinGen gnomAD |
|
rs11552867 CA313391122 |
8 | L>P | No |
ClinGen TOPMed |
|
rs11552867 CA408660634 |
8 | L>R | No |
ClinGen TOPMed |
|
COSM4136840 rs567180261 CA9821211 |
11 | M>I | ovary [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC gnomAD |
rs767198019 CA9821210 |
11 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
CA9821212 rs755675723 |
12 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
rs940585949 CA313391161 |
13 | S>G | No |
ClinGen TOPMed |
|
CA313391167 rs775405660 |
13 | S>T | No |
ClinGen Ensembl |
|
CA9821214 rs753254646 |
15 | T>I | No |
ClinGen ExAC gnomAD |
|
CA9821215 rs377431173 |
16 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs930283902 CA313391184 |
18 | S>L | No |
ClinGen Ensembl |
|
CA408661213 rs1282807075 |
33 | K>N | No |
ClinGen gnomAD |
|
rs879924656 CA313403971 |
33 | K>R | No |
ClinGen TOPMed gnomAD |
|
CA408661223 rs1453654131 |
35 | N>D | No |
ClinGen gnomAD |
|
CA9821237 rs781351779 |
43 | V>I | No |
ClinGen ExAC gnomAD |
|
CA16603315 RCV000439717 rs1057520172 |
44 | E>G | No |
ClinGen ClinVar Ensembl dbSNP |
|
CA313403981 rs998219387 |
45 | V>I | No |
ClinGen Ensembl |
|
rs756349757 CA9821239 |
46 | T>A | No |
ClinGen ExAC gnomAD |
|
rs1273914575 CA408661312 |
48 | D>A | No |
ClinGen gnomAD |
|
CA9821241 rs749409829 |
49 | G>E | No |
ClinGen ExAC TOPMed |
|
rs144293716 CA9821245 |
58 | N>S | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs1384700874 CA408661435 |
65 | W>R | No |
ClinGen TOPMed |
|
CA9821250 rs759144696 |
66 | K>E | No |
ClinGen ExAC gnomAD |
|
CA408661457 rs1396703645 |
68 | P>T | No |
ClinGen gnomAD |
|
rs1351295729 CA408661479 |
71 | V>A | No |
ClinGen gnomAD |
|
CA9821270 rs746815909 |
72 | I>V | No |
ClinGen ExAC gnomAD |
|
rs776445457 CA9821272 |
73 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
CA408661525 rs1484852077 |
77 | S>N | No |
ClinGen gnomAD |
|
CA313407659 rs564964052 |
80 | H>Y | No |
ClinGen TOPMed gnomAD |
|
rs532322331 CA9821276 |
82 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
rs532322331 CA9821275 |
82 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
CA9821277 rs767950508 COSM3693445 |
82 | R>H | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
CA408661582 rs1396445816 |
85 | S>N | No |
ClinGen gnomAD |
|
rs991608301 CA313407678 |
94 | L>S | No |
ClinGen TOPMed |
|
CA408661704 rs1158412425 |
103 | Y>C | No |
ClinGen gnomAD |
|
rs766676602 CA9821280 |
105 | T>A | No |
ClinGen ExAC gnomAD |
|
rs754067595 CA9821281 |
108 | S>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1159695069 CA408661745 |
109 | N>S | No |
ClinGen TOPMed gnomAD |
|
rs201149238 CA9821283 |
110 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA9821282 rs574578082 |
110 | N>Y | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA9821285 COSM1411293 rs199947085 |
113 | L>F | ovary large_intestine [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
CA313408767 rs998704134 |
115 | E>V | No |
ClinGen TOPMed |
|
CA408661808 rs1339798251 |
116 | V>E | No |
ClinGen gnomAD |
|
CA408661815 rs1601841346 |
117 | V>A | No |
ClinGen Ensembl |
|
rs1174175667 CA408661810 |
117 | V>I | No |
ClinGen TOPMed |
|
CA408661818 rs1274482221 |
118 | V>L | No |
ClinGen gnomAD |
|
CA9821293 rs769621140 |
124 | G>S | No |
ClinGen ExAC gnomAD |
|
rs775254034 CA9821294 |
125 | D>Y | No |
ClinGen ExAC gnomAD |
|
CA9821295 rs762402155 |
126 | K>E | No |
ClinGen ExAC gnomAD |
|
CA9821297 rs183893157 |
129 | T>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs150122428 CA313408806 |
131 | T>A | No |
ClinGen ESP TOPMed |
|
CA408661910 rs1474507113 |
132 | I>T | No |
ClinGen gnomAD |
|
COSM1177843 rs138451400 CA9821300 |
137 | I>V | endometrium [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
rs759868750 CA9821301 |
140 | D>N | No |
ClinGen ExAC gnomAD |
|
CA408661980 rs1179469441 |
143 | Q>* | No |
ClinGen TOPMed |
|
CA408661986 rs1486359203 |
144 | L>I | No |
ClinGen TOPMed |
|
rs202036043 CA9821304 |
145 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA9821305 rs764175154 |
146 | S>C | No |
ClinGen ExAC TOPMed |
|
rs1262815311 CA408662008 |
147 | E>A | No |
ClinGen TOPMed |
|
CA9821306 rs751456152 |
151 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1295009852 CA408662086 |
159 | N>D | No |
ClinGen gnomAD |
|
RCV000202683 rs864309573 CA248882 |
159 | N>I | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
rs1346700990 CA408662107 |
160 | G>E | No |
ClinGen TOPMed |
|
CA408662109 rs1346700990 |
160 | G>V | No |
ClinGen TOPMed |
|
CA408662119 rs1363501401 |
162 | S>L | No |
ClinGen TOPMed gnomAD |
|
CA408662124 rs1300101952 |
163 | L>F | No |
ClinGen gnomAD |
|
CA313411530 rs146558867 |
165 | L>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA9821324 rs146558867 |
165 | L>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA408662144 rs1236882947 |
166 | P>H | No |
ClinGen TOPMed gnomAD |
|
CA408662145 rs1236882947 |
166 | P>R | No |
ClinGen TOPMed gnomAD |
|
CA408662142 rs1394583571 |
166 | P>S | No |
ClinGen TOPMed |
|
rs1353617995 CA408662155 |
168 | L>V | No |
ClinGen gnomAD |
|
CA408662169 rs1601849348 |
170 | C>G | No |
ClinGen Ensembl |
|
CA408662179 rs1243898641 |
171 | N>S | No |
ClinGen gnomAD |
|
rs1486207844 CA408662184 |
172 | S>G | No |
ClinGen gnomAD |
|
rs1411775976 CA408662193 |
173 | A>T | No |
ClinGen gnomAD |
|
rs1007090684 CA313411532 |
173 | A>V | No |
ClinGen gnomAD |
|
rs989735759 CA408662202 |
174 | I>M | No |
ClinGen TOPMed gnomAD |
|
CA313411549 rs1018522800 |
175 | S>L | No |
ClinGen TOPMed gnomAD |
|
CA313411560 rs962670147 |
177 | H>Q | No |
ClinGen TOPMed gnomAD |
|
rs962670147 CA408662220 |
177 | H>Q | No |
ClinGen TOPMed gnomAD |
|
rs1156892976 CA408662216 |
177 | H>Y | No |
ClinGen TOPMed gnomAD |
|
rs1354122064 CA408662224 |
178 | C>Y | No |
ClinGen gnomAD |
|
rs1337089619 CA408662239 |
180 | L>F | No |
ClinGen gnomAD |
|
CA408662240 rs1235906715 |
180 | L>H | No |
ClinGen TOPMed |
|
CA408662243 rs1324654549 |
181 | C>R | No |
ClinGen TOPMed gnomAD |
|
CA408662252 rs1368322596 |
182 | L>F | No |
ClinGen gnomAD |
|
CA9821326 rs765532777 |
183 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1350469813 CA408662267 |
184 | G>A | No |
ClinGen gnomAD |
|
rs1222448344 CA408662271 |
185 | L>S | No |
ClinGen gnomAD |
|
rs1270310844 CA408662287 |
187 | D>G | No |
ClinGen TOPMed gnomAD |
|
rs1215761563 CA408662283 |
187 | D>N | No |
ClinGen gnomAD |
|
rs536848052 CA313411574 |
188 | S>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs536848052 CA9821327 |
188 | S>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA9821328 rs763167918 |
189 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
CA408662302 rs1203917762 |
190 | I>F | No |
ClinGen TOPMed gnomAD |
|
CA408662304 rs1245341249 |
190 | I>T | No |
ClinGen TOPMed gnomAD |
|
rs1405492270 CA408662313 |
192 | A>T | No |
ClinGen TOPMed |
|
CA313411582 rs937191688 |
194 | R>* | No |
ClinGen TOPMed gnomAD |
|
rs530510456 CA408662327 |
194 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs530510456 CA9821329 |
194 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA408662331 rs1391275406 |
195 | V>A | No |
ClinGen TOPMed gnomAD |
|
CA313411592 rs555052742 |
195 | V>I | No |
ClinGen 1000Genomes TOPMed |
|
CA408662342 rs1469384042 |
197 | G>E | No |
ClinGen TOPMed |
|
CA408662345 rs1253368266 |
198 | F>I | No |
ClinGen TOPMed gnomAD |
|
rs1469390584 CA408662352 |
198 | F>L | No |
ClinGen gnomAD |
|
rs1175293033 CA408662358 |
199 | T>I | No |
ClinGen TOPMed gnomAD |
|
rs1410003355 CA408662361 |
200 | G>C | No |
ClinGen gnomAD |
|
rs771526786 CA9821342 |
205 | D>G | No |
ClinGen ExAC gnomAD |
|
CA313417187 rs373751787 |
206 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA9821345 rs770147109 |
208 | S>F | No |
ClinGen ExAC gnomAD |
|
rs775987482 CA408662461 |
212 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
CA408662458 rs1274835131 |
212 | D>G | No |
ClinGen TOPMed gnomAD |
|
rs763214263 CA9821347 |
214 | T>A | No |
ClinGen ExAC gnomAD |
|
rs996268129 CA313417229 |
214 | T>I | No |
ClinGen TOPMed |
|
rs112357913 CA313417234 |
215 | R>K | No |
ClinGen Ensembl |
|
rs539049941 CA9821369 |
216 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs773485992 CA9821370 |
219 | N>D | No |
ClinGen ExAC TOPMed gnomAD |
|
CA9821371 rs760820172 |
219 | N>S | No |
ClinGen ExAC gnomAD |
|
CA9821372 rs766383556 |
220 | G>V | No |
ClinGen ExAC gnomAD |
|
rs200506310 CA9821373 |
222 | D>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA408662551 COSM443685 rs775855652 |
225 | E>K | breast [Cosmic] | No |
ClinGen cosmic curated Ensembl |
CA313377588 rs775855652 |
225 | E>Q | No |
ClinGen Ensembl |
|
CA313377591 rs1014076570 |
227 | A>G | No |
ClinGen Ensembl |
|
rs1193862113 CA408662581 |
229 | A>G | No |
ClinGen TOPMed |
|
CA9821374 rs759393619 |
229 | A>T | No |
ClinGen ExAC gnomAD |
|
rs368544131 CA313377595 |
230 | G>V | No |
ClinGen ESP TOPMed gnomAD |
|
rs904147573 CA313377598 |
232 | N>D | No |
ClinGen TOPMed |
|
CA408662606 rs1439066122 |
233 | R>S | No |
ClinGen gnomAD |
|
CA313377601 rs200246240 |
233 | R>W | No |
ClinGen 1000Genomes |
|
CA9821375 rs764880325 |
235 | V>I | No |
ClinGen ExAC gnomAD |
|
CA9821376 rs752347603 |
236 | S>G | No |
ClinGen ExAC gnomAD |
|
rs1202637298 CA408662630 |
237 | G>E | No |
ClinGen TOPMed |
|
rs758111695 CA9821377 |
238 | N>S | No |
ClinGen ExAC gnomAD |
|
rs758111695 CA408662636 |
238 | N>T | No |
ClinGen ExAC gnomAD |
|
rs1320855096 CA408662643 |
239 | N>T | No |
ClinGen TOPMed |
|
rs777388999 CA9821378 |
242 | S>L | No |
ClinGen ExAC gnomAD |
|
CA408662678 rs1601902200 |
245 | N>D | No |
ClinGen Ensembl |
|
CA408662688 rs1568940667 |
246 | G>D | No |
ClinGen Ensembl |
|
rs751119730 CA9821379 |
251 | S>C | No |
ClinGen ExAC TOPMed |
|
rs751119730 CA313377616 |
251 | S>Y | No |
ClinGen ExAC TOPMed |
|
CA313377621 rs540203213 |
253 | P>H | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA9821380 rs540203213 |
253 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA408662731 rs1601902249 |
253 | P>T | No |
ClinGen Ensembl |
|
CA408662740 rs1268272734 |
255 | R>G | No |
ClinGen TOPMed gnomAD |
|
CA313377627 rs567519259 |
257 | S>L | No |
ClinGen Ensembl |
|
rs1191416990 CA408662760 |
258 | R>Q | No |
ClinGen TOPMed gnomAD |
|
CA9821382 rs749700881 |
260 | P>A | No |
ClinGen ExAC gnomAD |
|
rs769071760 CA9821383 |
260 | P>L | No |
ClinGen ExAC gnomAD |
|
CA9821384 rs371486505 |
261 | P>T | No |
ClinGen ESP ExAC gnomAD |
|
CA408662784 rs1284234404 |
263 | T>P | No |
ClinGen gnomAD |
|
CA408662788 rs1362508663 |
263 | T>S | No |
ClinGen gnomAD |
|
rs1391038915 CA408662794 |
264 | P>R | No |
ClinGen TOPMed |
|
rs1468406753 CA408662792 |
264 | P>T | No |
ClinGen TOPMed |
|
rs200896809 CA9821385 |
265 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
CA9821386 rs772473360 |
265 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1032936752 CA313377641 |
266 | R>K | No |
ClinGen TOPMed gnomAD |
|
CA9821387 rs561908911 |
267 | P>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs776638717 CA9821408 |
268 | A>V | No |
ClinGen ExAC gnomAD |
|
rs769770717 CA9821410 |
269 | S>P | No |
ClinGen ExAC gnomAD |
|
rs1294659184 CA408662875 |
270 | V>A | No |
ClinGen gnomAD |
|
CA408662869 rs907332969 |
270 | V>I | No |
ClinGen gnomAD |
|
CA313378279 rs907332969 |
270 | V>L | No |
ClinGen gnomAD |
|
rs371132495 CA9821412 |
271 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA9821413 rs763819793 |
272 | G>R | No |
ClinGen ExAC gnomAD |
|
CA9821415 rs761441607 |
274 | P>S | No |
ClinGen ExAC gnomAD |
|
CA313378309 rs752529180 |
275 | S>C | No |
ClinGen Ensembl |
|
CA408662923 rs1190135864 |
275 | S>P | No |
ClinGen gnomAD |
|
rs1190135864 CA408662922 |
275 | S>T | No |
ClinGen gnomAD |
|
CA9821418 rs755622231 |
276 | A>V | No |
ClinGen ExAC gnomAD |
|
rs532039837 CA313378316 |
277 | T>A | No |
ClinGen 1000Genomes |
|
CA9821419 rs765880341 |
277 | T>I | No |
ClinGen ExAC gnomAD |
|
rs145113977 CA9821420 |
280 | S>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs758843309 CA9821421 |
281 | D>V | No |
ClinGen ExAC gnomAD |
|
CA408662986 rs1375036470 |
281 | D>Y | No |
ClinGen gnomAD |
|
CA9821422 rs372508275 |
284 | S>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1360707678 CA408663019 |
284 | S>N | No |
ClinGen TOPMed gnomAD |
|
CA408663038 rs1412931492 |
285 | T>I | No |
ClinGen gnomAD |
|
rs757476200 CA9821424 |
286 | G>S | No |
ClinGen ExAC gnomAD |
|
CA408663059 rs1217397730 |
287 | S>C | No |
ClinGen TOPMed |
|
rs781452901 CA9821425 |
288 | L>M | No |
ClinGen ExAC gnomAD |
|
rs368353835 CA9821426 |
289 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
CA9821427 rs368353835 |
289 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs370394645 CA9821429 |
290 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA408663100 rs1402966218 |
292 | N>D | No |
ClinGen TOPMed |
|
rs774074894 CA9821433 |
295 | T>I | No |
ClinGen ExAC gnomAD |
|
rs761649622 CA9821434 |
296 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs772884585 CA9821436 |
298 | S>C | No |
ClinGen ExAC gnomAD |
|
CA408663169 rs1158381249 |
298 | S>P | No |
ClinGen TOPMed |
|
rs1438164821 CA408663198 |
300 | G>E | No |
ClinGen TOPMed |
|
rs1450388697 CA408663199 |
301 | A>T | No |
ClinGen gnomAD |
|
rs1188964083 CA408663214 |
303 | S>Y | No |
ClinGen gnomAD |
|
CA408663226 rs1432762671 |
305 | L>S | No |
ClinGen gnomAD |
|
CA408663236 rs1178081069 |
306 | I>M | No |
ClinGen gnomAD |
|
CA408663238 rs1568942945 |
307 | I>V | No |
ClinGen Ensembl |
|
rs1359700819 CA408663250 |
309 | L>F | No |
ClinGen gnomAD |
|
CA408663267 rs1286623983 |
311 | I>M | No |
ClinGen TOPMed gnomAD |
|
CA9821438 rs765925331 |
311 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1217962253 CA408663269 |
312 | S>P | No |
ClinGen TOPMed |
|
CA408663292 rs1600337834 |
316 | G>S | No |
ClinGen Ensembl |
|
CA9821440 rs763618197 |
317 | P>L | No |
ClinGen ExAC gnomAD |
|
rs753257483 CA9821439 |
317 | P>T | No |
ClinGen ExAC gnomAD |
|
CA408663302 rs1237001990 |
318 | R>G | No |
ClinGen gnomAD |
|
CA408663326 rs1436322882 |
321 | N>S | No |
ClinGen TOPMed gnomAD |
|
CA9821444 rs200085579 |
322 | P>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA313378408 rs1039152066 |
323 | V>I | No |
ClinGen TOPMed gnomAD |
|
rs750609503 CA9821445 |
326 | A>S | No |
ClinGen ExAC gnomAD |
|
rs866476099 CA313378434 |
329 | P>S | No |
ClinGen Ensembl |
|
rs532597401 CA9821447 |
331 | G>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs755013435 CA313379347 |
340 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
CA9821468 rs755013435 |
340 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs755013435 CA9821469 |
340 | G>W | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1398131570 CA408663466 |
341 | R>* | No |
ClinGen gnomAD |
|
CA9821470 rs748065611 |
341 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
rs771764384 CA9821471 |
344 | Y>C | No |
ClinGen ExAC gnomAD |
|
CA9821472 rs534969276 |
346 | D>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs201610952 CA9821473 |
347 | H>R | No |
ClinGen 1000Genomes ExAC |
|
CA408663510 rs1291575831 |
348 | V>I | No |
ClinGen TOPMed gnomAD |
|
rs776390329 CA9821475 |
353 | T>A | No |
ClinGen ExAC gnomAD |
|
CA408663587 rs1600344179 |
358 | E>D | No |
ClinGen Ensembl |
|
rs888291691 CA313379392 |
359 | P>R | No |
ClinGen TOPMed gnomAD |
|
rs1421783983 CA408663610 |
363 | G>S | No |
ClinGen TOPMed |
|
rs1276445617 CA408663888 |
366 | R>W | No |
ClinGen gnomAD |
|
CA408663893 rs1443603080 |
367 | R>W | No |
ClinGen gnomAD |
|
CA9821540 rs765360878 |
368 | V>A | No |
ClinGen ExAC gnomAD |
|
CA9821539 rs765360878 |
368 | V>G | No |
ClinGen ExAC gnomAD |
|
CA9821541 rs758376235 |
370 | N>D | No |
ClinGen ExAC gnomAD |
|
CA408663909 rs758376235 |
370 | N>H | No |
ClinGen ExAC gnomAD |
|
CA9821542 rs375212186 |
371 | M>R | No |
ClinGen ESP ExAC gnomAD |
|
CA9821543 rs368511233 |
372 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1391208087 CA408663931 |
373 | R>C | No |
ClinGen TOPMed gnomAD |
|
rs1473065586 CA408663932 |
373 | R>H | No |
ClinGen TOPMed |
|
CA408663937 rs1600353983 |
374 | I>F | No |
ClinGen Ensembl |
|
rs1600354011 CA408663946 |
375 | Y>F | No |
ClinGen Ensembl |
|
rs1017701577 CA313380838 |
376 | Y>* | No |
ClinGen TOPMed |
|
CA408663965 rs1600354053 |
378 | D>Y | No |
ClinGen Ensembl |
|
CA9821545 rs781067911 |
380 | F>L | No |
ClinGen ExAC gnomAD |
|
CA9821547 rs557788946 |
384 | T>A | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA408664012 rs1484279693 |
385 | T>A | No |
ClinGen TOPMed |
|
rs1324908711 CA408664015 |
385 | T>M | No |
ClinGen gnomAD |
|
rs1568949531 CA408664024 |
386 | W>C | No |
ClinGen Ensembl |
|
rs1299519505 CA408664035 |
388 | R>K | No |
ClinGen gnomAD |
|
CA9821551 rs778268568 |
391 | L>P | No |
ClinGen ExAC gnomAD |
|
CA9821552 rs747452758 |
394 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
CA9821554 rs763307837 |
395 | R>Q | No |
ClinGen ExAC gnomAD |
|
CA9821556 rs770092708 |
396 | N>K | No |
ClinGen ExAC gnomAD |
|
rs1248279016 CA408664090 |
397 | Y>C | No |
ClinGen gnomAD |
|
CA408664106 rs1261063793 |
399 | Q>R | No |
ClinGen TOPMed |
|
rs1460138625 CA408664120 |
401 | Q>E | No |
ClinGen gnomAD |
|
CA408664128 rs1600354449 |
402 | L>V | No |
ClinGen Ensembl |
|
rs146383612 CA9821559 |
403 | Q>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs764257608 CA9821560 |
404 | R>H | No |
ClinGen ExAC gnomAD |
|
rs767540080 CA408664225 |
415 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
rs767540080 CA9821562 |
415 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
CA408664266 rs1568949777 |
421 | G>W | No |
ClinGen Ensembl |
|
rs750277686 CA9821584 |
425 | L>V | No |
ClinGen ExAC gnomAD |
|
CA9821585 rs760529689 |
428 | T>A | No |
ClinGen ExAC gnomAD |
|
CA9821586 rs766018655 |
429 | S>P | No |
ClinGen ExAC gnomAD |
|
rs577228627 CA9821587 |
430 | Q>H | No |
ClinGen ExAC gnomAD |
|
rs1424511962 CA408664589 |
430 | Q>R | No |
ClinGen TOPMed |
|
rs1193052291 CA408664624 |
435 | D>N | No |
ClinGen TOPMed |
|
rs1568953807 CA408664636 |
436 | P>H | No |
ClinGen Ensembl |
|
CA9821588 rs754679059 |
437 | L>F | No |
ClinGen ExAC |
|
CA313382604 rs146021135 |
439 | P>L | No |
ClinGen 1000Genomes |
|
CA408664688 rs1422261364 |
445 | E>K | No |
ClinGen gnomAD |
|
CA9821606 rs776343448 |
448 | T>I | No |
ClinGen ExAC gnomAD |
|
CA408665665 rs1568963705 |
451 | N>Y | No |
ClinGen Ensembl |
|
CA9821611 rs373086001 |
457 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1229642621 CA408665716 |
458 | N>S | No |
ClinGen TOPMed gnomAD |
|
CA408665728 rs1303227309 |
460 | N>H | No |
ClinGen gnomAD |
|
rs756637836 CA9821613 |
460 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1381771083 CA408665742 |
462 | R>* | No |
ClinGen TOPMed |
|
rs780578824 CA9821614 |
462 | R>Q | No |
ClinGen ExAC gnomAD |
|
rs1052275 CA313386733 |
464 | T>I | No |
ClinGen Ensembl |
|
CA408665794 rs1207005752 |
469 | P>L | No |
ClinGen gnomAD |
|
rs925126854 CA313386753 |
470 | R>T | No |
ClinGen Ensembl |
|
CA408665828 rs1205282746 |
473 | G>S | No |
ClinGen TOPMed gnomAD |
|
CA9821645 rs372589721 |
474 | Q>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs770996522 CA9821646 |
478 | K>E | No |
ClinGen ExAC gnomAD |
|
rs76412574 CA313389628 |
478 | K>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA9821648 rs745740703 |
479 | P>T | No |
ClinGen ExAC gnomAD |
|
rs1399431957 CA408666378 |
483 | G>V | No |
ClinGen gnomAD |
|
rs150653226 CA9821651 |
486 | M>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA9821652 rs768224067 |
492 | G>R | No |
ClinGen ExAC gnomAD |
|
CA9821654 rs761241388 |
498 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
CA313389738 rs75849635 |
499 | H>Q | No |
ClinGen Ensembl |
|
rs201066823 CA9821657 |
510 | R>C | No |
ClinGen ExAC gnomAD |
|
COSM2758045 CA9821658 rs765813305 |
510 | R>H | pancreas [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
rs1381633045 CA408666641 |
513 | K>I | No |
ClinGen TOPMed gnomAD |
|
rs1229807297 CA408666670 |
516 | L>Q | No |
ClinGen gnomAD |
|
rs1229807297 CA408666674 |
516 | L>R | No |
ClinGen gnomAD |
|
CA408667927 rs1368117033 |
518 | N>D | No |
ClinGen gnomAD |
|
rs754988422 CA9821708 |
518 | N>S | No |
ClinGen ExAC gnomAD |
|
rs1161299955 CA408667975 |
525 | V>I | No |
ClinGen gnomAD |
|
rs748002342 CA9821710 |
531 | K>R | No |
ClinGen ExAC gnomAD |
|
rs1419626764 CA408668021 |
532 | V>I | No |
ClinGen gnomAD |
|
rs1437229274 CA408668028 |
533 | Q>E | No |
ClinGen TOPMed |
|
rs777586026 CA9821712 |
533 | Q>L | No |
ClinGen ExAC gnomAD |
|
rs746597590 CA9821713 |
535 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
CA9821714 rs770706516 COSM3389695 |
536 | R>Q | pancreas [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
CA408668123 rs1244008169 |
544 | M>I | No |
ClinGen gnomAD |
|
CA9821739 rs748720455 |
548 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1388247412 CA408668198 |
555 | K>R | No |
ClinGen gnomAD |
|
rs201871783 CA313396641 |
556 | T>A | No |
ClinGen 1000Genomes |
|
rs200841333 CA313396650 |
558 | F>L | No |
ClinGen 1000Genomes |
|
CA313396667 rs200239748 |
562 | F>L | No |
ClinGen 1000Genomes |
|
CA313396670 rs199703668 |
562 | F>S | No |
ClinGen 1000Genomes |
|
rs1270291556 CA408669060 |
566 | M>I | No |
ClinGen gnomAD |
|
CA408669066 rs1318436647 |
567 | S>N | No |
ClinGen gnomAD |
|
rs746147850 CA9821767 COSM373050 |
569 | S>C | lung [Cosmic] | No |
ClinGen cosmic curated ExAC |
rs1568987061 CA408669081 |
569 | S>N | No |
ClinGen Ensembl |
|
CA9821768 rs770045595 |
570 | P>S | No |
ClinGen ExAC gnomAD |
|
CA9821771 rs764160233 |
576 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
CA9821772 rs774383028 |
576 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
rs553442220 CA313402459 |
578 | W>* | No |
ClinGen Ensembl |
|
rs761682470 CA9821773 |
589 | Y>C | No |
ClinGen ExAC gnomAD |
|
CA9821774 rs767281431 |
593 | A>T | No |
ClinGen ExAC gnomAD |
|
CA313403818 rs113468730 |
601 | S>P | No |
ClinGen Ensembl |
|
rs1202424060 CA408669457 |
604 | V>L | No |
ClinGen gnomAD |
|
CA408669495 rs1470332162 |
609 | Y>D | No |
ClinGen gnomAD |
|
rs1017017378 CA313403833 |
615 | A>S | No |
ClinGen TOPMed |
|
CA408669545 rs1412015966 |
616 | G>W | No |
ClinGen gnomAD |
|
rs778741830 CA313403835 |
617 | K>N | No |
ClinGen Ensembl |
|
rs1164703162 CA408669560 |
618 | D>G | No |
ClinGen gnomAD |
|
CA408669556 rs1446855829 |
618 | D>N | No |
ClinGen gnomAD |
|
CA408669568 rs1372710627 |
619 | N>I | No |
ClinGen TOPMed |
|
rs766038122 CA9821796 |
623 | Q>* | No |
ClinGen ExAC gnomAD |
|
rs541577551 CA313403852 |
623 | Q>P | No |
ClinGen Ensembl |
|
CA408669617 rs1303782556 |
626 | P>A | No |
ClinGen TOPMed |
|
CA9821797 rs753429065 |
627 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
COSM94528 rs1600455770 CA408669642 |
630 | I>V | lung [Cosmic] | No |
ClinGen cosmic curated Ensembl |
rs1035218399 CA313403874 |
631 | N>S | No |
ClinGen TOPMed |
|
CA313403883 rs899430276 |
633 | D>H | No |
ClinGen TOPMed |
|
rs899430276 CA313403880 |
633 | D>N | No |
ClinGen TOPMed |
|
rs752240722 CA9821800 |
634 | H>N | No |
ClinGen ExAC gnomAD |
|
CA9821801 rs757758667 |
639 | R>C | No |
ClinGen ExAC gnomAD |
|
COSM1210955 CA9821802 rs781704531 |
639 | R>H | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
rs746251467 CA9821803 |
644 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs80241710 CA313403931 |
646 | A>S | No |
ClinGen Ensembl |
|
rs755290439 CA9821824 |
651 | H>R | No |
ClinGen ExAC |
|
rs7268389 CA313404782 |
656 | D>V | No |
ClinGen Ensembl |
|
CA408669842 rs1445655265 |
657 | T>M | No |
ClinGen TOPMed gnomAD |
|
rs777573141 CA9821829 |
663 | F>L | No |
ClinGen ExAC gnomAD |
|
CA408669888 rs1431712264 |
664 | Y>C | No |
ClinGen gnomAD |
|
rs1470454047 CA408669895 |
665 | K>R | No |
ClinGen gnomAD |
|
rs770844266 CA9821830 |
666 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
rs776461109 CA9821831 |
666 | R>H | No |
ClinGen ExAC gnomAD |
|
CA9821834 rs759300326 |
671 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1346977440 CA408669942 |
672 | V>A | No |
ClinGen gnomAD |
|
rs1199004609 CA408669940 |
672 | V>F | No |
ClinGen Ensembl |
|
rs762383802 CA9821838 |
677 | L>V | No |
ClinGen ExAC gnomAD |
|
CA9821840 rs754843646 |
682 | P>T | No |
ClinGen ExAC gnomAD |
|
CA408670012 rs1388555664 |
683 | E>Q | No |
ClinGen TOPMed |
|
rs1600458725 CA408670030 |
685 | Y>S | No |
ClinGen Ensembl |
|
rs766959569 CA9821842 |
686 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
CA408670070 rs1480822794 |
691 | V>I | No |
ClinGen gnomAD |
|
rs1269748222 CA408670121 |
696 | I>V | No |
ClinGen TOPMed |
|
rs757281730 CA9821869 |
697 | E>K | No |
ClinGen ExAC gnomAD |
|
rs756003451 CA9821872 |
703 | M>I | No |
ClinGen ExAC gnomAD |
|
CA313405242 rs867531441 |
706 | S>F | No |
ClinGen Ensembl |
|
rs544554436 CA9821873 |
707 | V>I | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs1568990577 CA408670256 |
709 | K>R | No |
ClinGen Ensembl |
|
CA9821877 rs747674768 |
712 | L>V | No |
ClinGen ExAC gnomAD |
|
CA9821879 rs772840953 |
716 | K>E | No |
ClinGen ExAC gnomAD |
|
CA313405321 rs1050912826 |
717 | S>G | No |
ClinGen Ensembl |
|
CA9821880 rs760143427 |
723 | N>D | No |
ClinGen ExAC TOPMed gnomAD |
|
rs760143427 CA408670454 |
723 | N>H | No |
ClinGen ExAC TOPMed gnomAD |
|
CA408670492 rs1380919325 |
726 | N>D | No |
ClinGen TOPMed |
|
rs1322957108 CA408670498 |
726 | N>S | No |
ClinGen TOPMed |
|
CA408670519 rs1384159436 |
727 | I>M | No |
ClinGen TOPMed gnomAD |
|
CA9821882 rs775965039 |
733 | N>S | No |
ClinGen ExAC |
|
CA9821884 rs377380158 |
735 | E>D | No |
ClinGen ESP ExAC gnomAD |
|
rs754583869 CA9821883 |
737 | Y>* | No |
ClinGen ExAC gnomAD |
|
CA313405390 rs890924646 |
738 | I>V | No |
ClinGen gnomAD |
|
rs6059862 CA313405392 |
739 | R>K | No |
ClinGen Ensembl |
|
rs1423130941 CA408672107 |
745 | R>S | No |
ClinGen gnomAD |
|
CA408672114 rs1600481512 |
746 | L>V | No |
ClinGen Ensembl |
|
rs1202471507 CA408672148 |
747 | S>C | No |
ClinGen TOPMed |
|
CA408672182 rs1264024151 |
752 | E>D | No |
ClinGen gnomAD |
|
CA313411861 rs574083139 |
758 | F>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs761198501 CA313411855 |
758 | F>S | No |
ClinGen TOPMed |
|
CA9821910 rs750545876 |
761 | F>L | No |
ClinGen ExAC gnomAD |
|
CA408672272 rs1205179942 |
765 | L>I | No |
ClinGen gnomAD |
|
CA313411905 rs1020647092 |
770 | L>F | No |
ClinGen TOPMed gnomAD |
|
CA408672318 rs1479186036 |
771 | Q>R | No |
ClinGen gnomAD |
|
CA9821914 rs754934939 |
776 | K>N | No |
ClinGen ExAC gnomAD |
|
rs1347434826 CA408672352 |
776 | K>Q | No |
ClinGen gnomAD |
|
CA408672429 rs1354134511 |
785 | M>V | No |
ClinGen gnomAD |
|
CA408672498 rs1300141397 |
789 | D>G | No |
ClinGen gnomAD |
|
rs1398695748 CA408672491 |
789 | D>N | No |
ClinGen TOPMed |
|
rs760812822 CA9821929 |
797 | A>V | No |
ClinGen ExAC gnomAD |
|
rs766431630 CA9821930 |
798 | I>T | No |
ClinGen ExAC gnomAD |
|
rs759593203 CA9821932 COSM1026033 |
800 | R>H | endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
rs762270452 CA313412418 |
801 | H>Q | No |
ClinGen Ensembl |
|
rs752572940 CA9821934 |
803 | A>G | No |
ClinGen ExAC gnomAD |
|
CA408673457 rs1569001011 |
815 | F>L | No |
ClinGen Ensembl |
|
CA408673473 rs1242054294 |
817 | K>E | No |
ClinGen gnomAD |
|
rs1474462069 CA408673478 |
817 | K>T | No |
ClinGen gnomAD |
|
CA408673493 rs1569001040 COSM1026034 |
818 | E>* | large_intestine endometrium [Cosmic] | No |
ClinGen cosmic curated Ensembl |
rs1420460046 CA408673577 |
823 | K>R | No |
ClinGen gnomAD |
|
CA408673723 rs1403585134 |
834 | T>P | No |
ClinGen gnomAD |
|
rs368005062 CA9821950 COSM1641328 |
836 | R>* | stomach [Cosmic] | No |
ClinGen cosmic curated ESP ExAC gnomAD |
CA408673760 rs1428002854 |
836 | R>L | No |
ClinGen gnomAD |
|
CA408673796 rs1480881406 |
839 | V>L | No |
ClinGen gnomAD |
|
CA9821953 rs763866443 |
845 | L>I | No |
ClinGen ExAC gnomAD |
|
rs1201953901 CA408673885 |
846 | M>L | No |
ClinGen gnomAD |
|
CA9821972 rs575380764 |
849 | N>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA9821973 rs374226560 |
856 | I>V | No |
ClinGen ESP ExAC gnomAD |
|
CA9821974 rs761631321 |
858 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
CA9821976 rs750008016 |
864 | W>R | No |
ClinGen ExAC gnomAD |
|
rs760312401 CA9821977 |
867 | R>K | No |
ClinGen ExAC gnomAD |
|
rs1569013598 CA408663148 |
869 | H>R | No |
ClinGen Ensembl |
|
rs1369656426 CA408663648 COSM214197 |
874 | R>C | skin breast [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
rs1457975002 COSM185702 CA408663649 |
874 | R>H | large_intestine endometrium [Cosmic] | No |
ClinGen cosmic curated gnomAD |
CA408663656 rs1393954588 |
875 | L>P | No |
ClinGen gnomAD |
|
rs1437705287 CA408663687 |
880 | Y>F | No |
ClinGen TOPMed |
|
rs774298764 CA9821993 |
894 | I>M | No |
ClinGen ExAC gnomAD |
1 associated diseases with Q96J02
[MIM: 613385]: Autoimmune disease, multisystem, with facial dysmorphism (ADMFD)
A disorder characterized by organomegaly, failure to thrive, developmental delay, dysmorphic features and autoimmune inflammatory cell infiltration of the lungs, liver and gut. {ECO:0000269|PubMed:20170897}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- A disorder characterized by organomegaly, failure to thrive, developmental delay, dysmorphic features and autoimmune inflammatory cell infiltration of the lungs, liver and gut. {ECO:0000269|PubMed:20170897}. Note=The disease is caused by variants affecting the gene represented in this entry.
6 regional properties for Q96J02
Type | Name | Position | InterPro Accession |
---|---|---|---|
domain | C2 domain | 1 - 115 | IPR000008 |
domain | HECT domain | 548 - 903 | IPR000569 |
domain | WW domain | 326 - 359 | IPR001202-1 |
domain | WW domain | 358 - 391 | IPR001202-2 |
domain | WW domain | 438 - 471 | IPR001202-3 |
domain | WW domain | 478 - 511 | IPR001202-4 |
Functions
Description | ||
---|---|---|
EC Number | 2.3.2.26 | Aminoacyltransferases |
Subcellular Localization |
|
|
PANTHER Family | PTHR11254 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
PANTHER Subfamily | PTHR11254:SF66 | E3 UBIQUITIN-PROTEIN LIGASE ITCHY HOMOLOG |
PANTHER Protein Class | ubiquitin-protein ligase | |
PANTHER Pathway Category |
Ubiquitin proteasome pathway E3 |
11 GO annotations of cellular component
Name | Definition |
---|---|
cell cortex | The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins. |
cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
cytoplasmic vesicle | A vesicle found in the cytoplasm of a cell. |
cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
early endosome membrane | The lipid bilayer surrounding an early endosome. |
extracellular exosome | A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm. |
intracellular membrane-bounded organelle | Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. |
membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
nucleoplasm | That part of the nuclear content other than the chromosomes or the nucleolus. |
plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
protein-containing complex | A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together. |
8 GO annotations of molecular function
Name | Definition |
---|---|
arrestin family protein binding | Binding to a member of the arrestin family, proteins involved in agonist-mediated desensitization of G protein-coupled receptors. |
CXCR chemokine receptor binding | Binding to a chemokine receptor in the CXCR family. |
ligase activity | Catalysis of the joining of two molecules, or two groups within a single molecule, using the energy from the hydrolysis of ATP, a similar triphosphate, or a pH gradient. |
ribonucleoprotein complex binding | Binding to a complex of RNA and protein. |
ubiquitin protein ligase activity | Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues. |
ubiquitin-like protein ligase binding | Binding to a ubiquitin-like protein ligase, such as ubiquitin-ligase. |
ubiquitin-like protein transferase activity | Catalysis of the transfer of a ubiquitin-like from one protein to another via the reaction X-ULP + Y --> Y-ULP + X, where both X-ULP and Y-ULP are covalent linkages. ULP represents a ubiquitin-like protein. |
ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. |
26 GO annotations of biological process
Name | Definition |
---|---|
apoptotic process | A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died. |
defense response to virus | Reactions triggered in response to the presence of a virus that act to protect the cell or organism. |
inflammatory response | The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages. |
innate immune response | Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. |
negative regulation of alpha-beta T cell proliferation | Any process that stops, prevents, or reduces the frequency, rate or extent of alpha-beta T cell proliferation. |
negative regulation of apoptotic process | Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process. |
negative regulation of defense response to virus | Any process that stops, prevents or reduces the rate or extent of antiviral mechanisms, thereby facilitating viral replication. |
negative regulation of JNK cascade | Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the JNK cascade. |
negative regulation of NF-kappaB transcription factor activity | Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of the transcription factor NF-kappaB. |
negative regulation of type I interferon production | Any process that stops, prevents, or reduces the frequency, rate, or extent of type I interferon production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families. |
nucleotide-binding oligomerization domain containing signaling pathway | The series of molecular signals initiated by the binding of a ligand (such as a bacterial peptidoglycan) to a cytoplasmic nucleotide-binding oligomerization domain containing (NOD) protein receptor, and ending with regulation of a downstream cellular process. |
positive regulation of protein catabolic process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. |
positive regulation of receptor catabolic process | Any process that activates or increases the frequency, rate or extent of receptor catabolic process. |
positive regulation of T cell anergy | Any process that activates or increases the frequency, rate, or extent of T cell anergy. |
proteasome-mediated ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. |
protein autoubiquitination | The ubiquitination by a protein of one or more of its own amino acid residues, or residues on an identical protein. Ubiquitination occurs on the lysine residue by formation of an isopeptide crosslink. |
protein K29-linked ubiquitination | A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 29 of the ubiquitin monomers, is added to a protein. K29-linked ubiquitination targets the substrate protein for degradation. |
protein K48-linked ubiquitination | A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation. |
protein K63-linked ubiquitination | A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is added to a protein. K63-linked ubiquitination does not target the substrate protein for degradation, but is involved in several pathways, notably as a signal to promote error-free DNA postreplication repair. |
protein polyubiquitination | Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. |
protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
regulation of cell growth | Any process that modulates the frequency, rate, extent or direction of cell growth. |
regulation of hematopoietic stem cell differentiation | Any process that modulates the frequency, rate or extent of hematopoietic stem cell differentiation. |
regulation of protein deubiquitination | Any process that modulates the frequency, rate or extent of protein deubiquitination. Protein deubiquitination is the removal of one or more ubiquitin groups from a protein. |
ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. |
viral entry into host cell | The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm. |
23 homologous proteins in AiPD
UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
---|---|---|---|---|
P39940 | RSP5 | E3 ubiquitin-protein ligase RSP5 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
Q9V853 | Smurf | E3 ubiquitin-protein ligase Smurf1 | Drosophila melanogaster (Fruit fly) | SS |
Q9Y0H4 | Su(dx) | E3 ubiquitin-protein ligase Su | Drosophila melanogaster (Fruit fly) | SS |
O95817 | BAG3 | BAG family molecular chaperone regulator 3 | Homo sapiens (Human) | PR |
O60861 | GAS7 | Growth arrest-specific protein 7 | Homo sapiens (Human) | PR |
Q9HCE7 | SMURF1 | E3 ubiquitin-protein ligase SMURF1 | Homo sapiens (Human) | PR |
Q9HAU4 | SMURF2 | E3 ubiquitin-protein ligase SMURF2 | Homo sapiens (Human) | EV |
Q9H0M0 | WWP1 | NEDD4-like E3 ubiquitin-protein ligase WWP1 | Homo sapiens (Human) | EV |
O00308 | WWP2 | NEDD4-like E3 ubiquitin-protein ligase WWP2 | Homo sapiens (Human) | EV |
Q96PU5 | NEDD4L | E3 ubiquitin-protein ligase NEDD4-like | Homo sapiens (Human) | PR |
P46934 | NEDD4 | E3 ubiquitin-protein ligase NEDD4 | Homo sapiens (Human) | EV |
Q8IYU2 | HACE1 | E3 ubiquitin-protein ligase HACE1 | Homo sapiens (Human) | EV |
P46935 | Nedd4 | E3 ubiquitin-protein ligase NEDD4 | Mus musculus (Mouse) | PR |
Q9CUN6 | Smurf1 | E3 ubiquitin-protein ligase SMURF1 | Mus musculus (Mouse) | PR |
A2A5Z6 | Smurf2 | E3 ubiquitin-protein ligase SMURF2 | Mus musculus (Mouse) | SS |
Q8BZZ3 | Wwp1 | NEDD4-like E3 ubiquitin-protein ligase WWP1 | Mus musculus (Mouse) | SS |
Q60780 | Gas7 | Growth arrest-specific protein 7 | Mus musculus (Mouse) | PR |
Q9DBH0 | Wwp2 | NEDD4-like E3 ubiquitin-protein ligase WWP2 | Mus musculus (Mouse) | SS |
Q8CFI0 | Nedd4l | E3 ubiquitin-protein ligase NEDD4-like | Mus musculus (Mouse) | PR |
Q8C863 | Itch | E3 ubiquitin-protein ligase Itchy | Mus musculus (Mouse) | EV |
Q62940 | Nedd4 | E3 ubiquitin-protein ligase NEDD4 | Rattus norvegicus (Rat) | PR |
Q9N2Z7 | wwp-1 | E3 ubiquitin-protein ligase wwp-1 | Caenorhabditis elegans | SS |
A9JRZ0 | smurf2 | E3 ubiquitin-protein ligase SMURF2 | Danio rerio (Zebrafish) (Brachydanio rerio) | SS |
10 | 20 | 30 | 40 | 50 | 60 |
MSDSGSQLGS | MGSLTMKSQL | QITVISAKLK | ENKKNWFGPS | PYVEVTVDGQ | SKKTEKCNNT |
70 | 80 | 90 | 100 | 110 | 120 |
NSPKWKQPLT | VIVTPVSKLH | FRVWSHQTLK | SDVLLGTAAL | DIYETLKSNN | MKLEEVVVTL |
130 | 140 | 150 | 160 | 170 | 180 |
QLGGDKEPTE | TIGDLSICLD | GLQLESEVVT | NGETTCSENG | VSLCLPRLEC | NSAISAHCNL |
190 | 200 | 210 | 220 | 230 | 240 |
CLPGLSDSPI | SASRVAGFTG | ASQNDDGSRS | KDETRVSTNG | SDDPEDAGAG | ENRRVSGNNS |
250 | 260 | 270 | 280 | 290 | 300 |
PSLSNGGFKP | SRPPRPSRPP | PPTPRRPASV | NGSPSATSES | DGSSTGSLPP | TNTNTNTSEG |
310 | 320 | 330 | 340 | 350 | 360 |
ATSGLIIPLT | ISGGSGPRPL | NPVTQAPLPP | GWEQRVDQHG | RVYYVDHVEK | RTTWDRPEPL |
370 | 380 | 390 | 400 | 410 | 420 |
PPGWERRVDN | MGRIYYVDHF | TRTTTWQRPT | LESVRNYEQW | QLQRSQLQGA | MQQFNQRFIY |
430 | 440 | 450 | 460 | 470 | 480 |
GNQDLFATSQ | SKEFDPLGPL | PPGWEKRTDS | NGRVYFVNHN | TRITQWEDPR | SQGQLNEKPL |
490 | 500 | 510 | 520 | 530 | 540 |
PEGWEMRFTV | DGIPYFVDHN | RRTTTYIDPR | TGKSALDNGP | QIAYVRDFKA | KVQYFRFWCQ |
550 | 560 | 570 | 580 | 590 | 600 |
QLAMPQHIKI | TVTRKTLFED | SFQQIMSFSP | QDLRRRLWVI | FPGEEGLDYG | GVAREWFFLL |
610 | 620 | 630 | 640 | 650 | 660 |
SHEVLNPMYC | LFEYAGKDNY | CLQINPASYI | NPDHLKYFRF | IGRFIAMALF | HGKFIDTGFS |
670 | 680 | 690 | 700 | 710 | 720 |
LPFYKRILNK | PVGLKDLESI | DPEFYNSLIW | VKENNIEECD | LEMYFSVDKE | ILGEIKSHDL |
730 | 740 | 750 | 760 | 770 | 780 |
KPNGGNILVT | EENKEEYIRM | VAEWRLSRGV | EEQTQAFFEG | FNEILPQQYL | QYFDAKELEV |
790 | 800 | 810 | 820 | 830 | 840 |
LLCGMQEIDL | NDWQRHAIYR | HYARTSKQIM | WFWQFVKEID | NEKRMRLLQF | VTGTCRLPVG |
850 | 860 | 870 | 880 | 890 | 900 |
GFADLMGSNG | PQKFCIEKVG | KENWLPRSHT | CFNRLDLPPY | KSYEQLKEKL | LFAIEETEGF |
GQE |