Descriptions

The ubiquitin-proteasome system (UPS) is a major pathway regulating eukaryotic protein levels. Selectivity for UPS protein substrates, containing terminal destabilizing motifs (degrons), is largely governed by E3 ligases, which modify proteins with ubiquitin (UB) to target them for degradation.<br>KLHDC2 is a substrate-recognition component of a Cul2-RING (CRL2) E3 ubiquitin-protein ligase complex of the DesCEND (destruction via C-end degrons) pathway, which recognizes a C-degron located at the extreme C terminus of target proteins, leading to their ubiquitination and degradation.<br>Autoinhibition of KLHDC2 involves the self-assembly of its C-terminal Gly-Ser motif, which mimics a C-degron and engages the substrate-binding domain of another protomer in the homotetramer. This autoinhibited state prevents the binding of diGly substrates, ensuring that only true substrates that can displace the C-degron mimic can bind and activate the E3 ligase for ubiquitylation.

Autoinhibitory domains (AIDs)

Target domain

0-341 (Substrate binding domain)

Relief mechanism

Assay

Accessory elements

No accessory elements

Autoinhibited structure

Activated structure

1 structures for Q80YG3

Entry ID Method Resolution Chain Position Source
AF-Q80YG3-F1 Predicted AlphaFoldDB

18 variants for Q80YG3

Variant ID(s) Position Change Description Diseaes Association Provenance
rs3403377738 28 W>G No EVA
rs3403006856 83 V>A No EVA
rs3389240892 107 T>N No EVA
rs244917561 148 S>I No EVA
rs244917561 148 S>N No EVA
rs3389209536 166 F>L No EVA
rs3403315918 193 P>S No EVA
rs864287012 229 L>P No EVA
rs3402692654 239 S>P No EVA
rs3389173066 244 S>G No EVA
rs3412945639 248 R>W No EVA
rs3389173029 310 N>S No EVA
rs3389238637 311 E>D No EVA
rs3389173049 319 K>I No EVA
rs3389215924 320 D>G No EVA
rs3402073876 336 F>I No EVA
rs3402692685 336 F>Y No EVA
rs3389236996 346 S>A No EVA

No associated diseases with Q80YG3

1 regional properties for Q80YG3

Type Name Position InterPro Accession
repeat Kelch repeat type 1 196 - 235 IPR006652

Functions

Description
EC Number
Subcellular Localization
  • Cytoplasm, cytosol
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

3 GO annotations of cellular component

Name Definition
Cul5-RING ubiquitin ligase complex A ubiquitin ligase complex in which a cullin from the Cul5 subfamily and a RING domain protein form the catalytic core; substrate specificity is conferred by an elongin-BC adaptor and a SOCS/BC box protein.
cytoplasm The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
cytosol The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

1 GO annotations of molecular function

Name Definition
ubiquitin ligase-substrate adaptor activity The binding activity of a molecule that brings together a ubiquitin ligase and its substrate. Usually mediated by F-box BTB/POZ domain proteins.

2 GO annotations of biological process

Name Definition
protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
ubiquitin-dependent protein catabolic process via the C-end degron rule pathway The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the DesCEND (destruction via C-end degron) pathway. In the DesCEND pathway, C-terminal residues (C-end degrons) in substrates are recognized by Cul2-RING and Cul4-RING E3 ligases, whereupon the substrates are linked to ubiquitin and then delivered to the proteasome for degradation. C-end degrons can be present in full-length proteins, truncated proteins or proteolytically cleaved forms.

6 homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
Q5E9A7 KLHDC2 Kelch domain-containing protein 2 Bos taurus (Bovine) SS
Q9Y2U9 KLHDC2 Kelch domain-containing protein 2 Homo sapiens (Human) EV
Q8N7A1 KLHDC1 Kelch domain-containing protein 1 Homo sapiens (Human) SS
Q8N653 LZTR1 Leucine-zipper-like transcriptional regulator 1 Homo sapiens (Human) PR
Q4G5Y1 Klhdc2 Kelch domain-containing protein 2 Mus musculus (Mouse) SS
Q3KRE6 Klhdc2 Kelch domain-containing protein 2 Rattus norvegicus (Rat) SS
10 20 30 40 50 60
MADPQAFCVA EERSGHCAVV DGHFLYVWGG YVSIEDNEVY LPNDEMWTYD IDSGLWKMHL
70 80 90 100 110 120
MEGELPPSMS GSCGACIHGR LYVFGGYDDK GYSNRLYFVN LRTRDGTYTW EKITKFDGQP
130 140 150 160 170 180
PTPRDKLSCW VYKDRLIYFG GYGYRRHSEL QECFDVHDAS WEEQIFWGWH NDVHVFDTKT
190 200 210 220 230 240
RTWSQPEIKG GVPPQPRAAH SCAVLGNKGY VFGGRVLQTR MNDLHYLNLD TWVWSGRISV
250 260 270 280 290 300
NGESPKHRSW HTLTAITDDK LFLFGGLNAD NIPLSDGWIH NITTNCWKQL RHLPYTRPRL
310 320 330 340 350 360
WHTACLGKEN EIMVFGGSKD NLLFLDTGHC NDLLIFQTQP YSLLRSCLDC IGKNAIILKS
370 380 390 400
QISLLPPKLL QQVLKKITFW TAANYRKEQR IRKEETENNQ PRVSSC