Q38908
Gene name |
XTH30 (XTR4, At1g32170, F3C3.5) |
Protein name |
Probable xyloglucan endotransglucosylase/hydrolase protein 30 |
Names |
At-XTH30, XTH-30 |
Species |
Arabidopsis thaliana (Mouse-ear cress) |
KEGG Pathway |
ath:AT1G32170 |
EC number |
2.4.1.207: Hexosyltransferases |
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
1 structures for Q38908
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| AF-Q38908-F1 | Predicted | AlphaFoldDB |
37 variants for Q38908
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| tmp_1_11575438_C_G | 2 | S>C | No | 1000Genomes | |
| tmp_1_11575440_A_C | 3 | K>Q | No | 1000Genomes | |
| ENSVATH04698726 | 5 | S>* | No | 1000Genomes | |
| ENSVATH04698726 | 5 | S>L | No | 1000Genomes | |
| ENSVATH00058298 | 6 | Y>C | No | 1000Genomes | |
| ENSVATH04698727 | 10 | F>L | No | 1000Genomes | |
| tmp_1_11575479_T_C,A | 16 | L>I | No | 1000Genomes | |
| tmp_1_11575482_T_G | 17 | C>G | No | 1000Genomes | |
| ENSVATH01150904 | 20 | S>P | No | 1000Genomes | |
| ENSVATH00058300 | 21 | S>L | No | 1000Genomes | |
| tmp_1_11575519_C_G | 29 | T>S | No | 1000Genomes | |
| tmp_1_11575584_G_A | 51 | D>N | No | 1000Genomes | |
| tmp_1_11575599_C_G | 56 | L>V | No | 1000Genomes | |
| tmp_1_11575761_A_C | 78 | S>R | No | 1000Genomes | |
| ENSVATH14038679 | 135 | T>I | No | 1000Genomes | |
| ENSVATH12607112 | 158 | I>V | No | 1000Genomes | |
| ENSVATH12607114 | 160 | W>C | No | 1000Genomes | |
| tmp_1_11576434_A_G | 166 | I>V | No | 1000Genomes | |
| tmp_1_11577309_G_A | 189 | A>T | No | 1000Genomes | |
| tmp_1_11577346_C_G | 201 | A>G | No | 1000Genomes | |
| tmp_1_11577391_A_T | 216 | K>I | No | 1000Genomes | |
| ENSVATH04698782 | 221 | V>E | No | 1000Genomes | |
| tmp_1_11577427_C_G | 228 | S>C | No | 1000Genomes | |
| ENSVATH14038722 | 235 | D>Y | No | 1000Genomes | |
| ENSVATH04698784 | 249 | D>N | No | 1000Genomes | |
| ENSVATH01150938 | 252 | E>G | No | 1000Genomes | |
| ENSVATH01150937 | 252 | E>K | No | 1000Genomes | |
| ENSVATH04698785 | 264 | R>H | No | 1000Genomes | |
| ENSVATH12607505 | 283 | T>K | No | 1000Genomes | |
| ENSVATH12607506 | 298 | A>G | No | 1000Genomes | |
| tmp_1_11577675_T_A | 311 | F>I | No | 1000Genomes | |
| tmp_1_11577677_T_A | 311 | F>L | No | 1000Genomes | |
| tmp_1_11577684_A_T | 314 | T>S | No | 1000Genomes | |
| tmp_1_11577738_G_A | 332 | E>K | No | 1000Genomes | |
| ENSVATH01150942 | 337 | P>A | No | 1000Genomes | |
| ENSVATH12607508 | 339 | D>N | No | 1000Genomes | |
| ENSVATH04698789 | 340 | R>K | No | 1000Genomes |
No associated diseases with Q38908
No regional properties for Q38908
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for Q38908 | |||
Functions
| Description | ||
|---|---|---|
| EC Number | 2.4.1.207 | Hexosyltransferases |
| Subcellular Localization |
|
|
| PANTHER Family | ||
| PANTHER Subfamily | ||
| PANTHER Protein Class | ||
| PANTHER Pathway Category | No pathway information available | |
1 GO annotations of cellular component
| Name | Definition |
|---|---|
| apoplast | The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and includes cell walls, intercellular spaces and the lumen of dead structures such as xylem vessels. Water and solutes pass freely through it. |
3 GO annotations of molecular function
| Name | Definition |
|---|---|
| hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. |
| polysaccharide binding | Binding to a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. |
| xyloglucan:xyloglucosyl transferase activity | Catalysis of the cleavage of a beta-(1->4) bond in the backbone of a xyloglucan and transfers the xyloglucanyl segment on to O-4 of the non-reducing terminal glucose residue of an acceptor, which can be a xyloglucan or an oligosaccharide of xyloglucan. |
3 GO annotations of biological process
| Name | Definition |
|---|---|
| cell wall biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. |
| cell wall organization | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. |
| xyloglucan metabolic process | The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. |
1 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q9SMP1 | XTH11 | Probable xyloglucan endotransglucosylase/hydrolase protein 11 | Arabidopsis thaliana (Mouse-ear cress) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MSKSSYNHIF | ILILCLCLRS | SSAFTNLNTL | SFEESLSPLF | GDANLVRSPD | DLSVRLLLDR |
| 70 | 80 | 90 | 100 | 110 | 120 |
| YTGSGFISSN | MYQHGFYSSM | IKLPADYTAG | VVVAFYTSNG | DVFEKTHDEL | DIEFLGNIKG |
| 130 | 140 | 150 | 160 | 170 | 180 |
| KPWRFQTNLY | GNGSTHRGRE | ERYRLWFDPS | KEFHRYSILW | TPHKIIFWVD | DVPIREVIRN |
| 190 | 200 | 210 | 220 | 230 | 240 |
| DAMGADYPAK | PMALYATIWD | ASDWATSGGK | YKANYKFAPF | VAEFKSFSLD | GCSVDPIQEV |
| 250 | 260 | 270 | 280 | 290 | 300 |
| PMDCSDSVDF | LESQDYSSIN | SHQRAAMRRF | RQRFMYYSYC | YDTLRYPEPL | PECVIVPAEK |
| 310 | 320 | 330 | 340 | ||
| DRFKETGRLK | FGGTEARERR | RNRRQQRRPE | IEIESDPDDR | KLL |