Descriptions

Bis-(39-59) cyclic dimeric guanosine monophosphate (c-d-GMP) is a monocyclic RNA dinucleotide controlling biofilm formation via a transmembrane receptor LapD, a periplasmic cysteine protease LapG, and surface adhesin protein LapA depending on the level of phosphate in the medium. When the phosphate level is low, LapD is held in the off state by interactions of their EAL domain, with the S helix and the GGDEF domain, which allows the proteolytic reaction of LapA on the cell surface, and consequently biofilm dispersal. Interaction of c-d-GMP to the phosphodiesterase binding site on the EAL domain is required to stimulate the receptor (LapD) to release the S helix and the GGDEF domain facilitating the formation of a trans-subunit dimer interface, the binding of LapG to the output domain of LapD, and consequently permitting the activation of LapA to form biofilm.

Autoinhibitory domains (AIDs)

Target domain

403-637 (EAL domain)

Relief mechanism

Ligand binding

Assay

Accessory elements

No accessory elements

Autoinhibited structure

Activated structure

1 structures for Q21RY9

Entry ID Method Resolution Chain Position Source
AF-Q21RY9-F1 Predicted AlphaFoldDB

No variants for Q21RY9

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for Q21RY9

No associated diseases with Q21RY9

4 regional properties for Q21RY9

Type Name Position InterPro Accession
domain GGDEF domain 223 - 395 IPR000160
domain EAL domain 403 - 637 IPR001633
domain HAMP domain 167 - 221 IPR003660
domain LapD/MoxY, periplasmic domain 23 - 144 IPR032244

Functions

Description
EC Number
Subcellular Localization
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

1 GO annotations of cellular component

Name Definition
integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

No GO annotations of molecular function

Name Definition
No GO annotations for molecular function

1 GO annotations of biological process

Name Definition
signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.

No homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
No homologous proteins
10 20 30 40 50 60
MSLIKQLWIA IALVMTLAFG GSMVVSVLSA RHYLEQQLQV KNIDNANALA LSLSQLPKDP
70 80 90 100 110 120
VMIELQVAAQ FDAGHYSVIR ITSPTGKTLV ERVFSGALTG VPHWFIALTP INAAPGQALV
130 140 150 160 170 180
QDGWNQYGTL TLESQEQYAY QSLWDGTLKL LLWFVLGGLV TGAVGTLLIR IITRPLGEVV
190 200 210 220 230 240
AQAQAIAERR FLSIAEPRTP ELSSVVRAMN SMVERLKAMF SEEAARLETL RQKVNLDALS
250 260 270 280 290 300
GLSGRDHFLS QMRELVTGES FGAEGSLVMV RLTSLNTLNA RLGHQRADAL LKQLGRVLQD
310 320 330 340 350 360
SCQDRLGQQA GRLKGGEFAV VYPTTASPGE AGADLHQRLT QNWLPDWVAD VPDLFQVGAV
370 380 390 400 410 420
PYHRDQDVGD LLSRADEALA RAEAQGSNSC YAGEADSGST ARPAEQWRNL LTDAVAGGKL
430 440 450 460 470 480
RLAFYRVVGS ANQAAIHQEG VIRLQLDTAG ALLPAGDFMP MAAHLNLTAP IDLQVVKLAI
490 500 510 520 530 540
EYLRTTPGDI AINLSAETIV DFNFRRELAL LLQANPDMCK RLLFEVPEYG VFKQFDAFRD
550 560 570 580 590 600
LVHAVKPLGC RVGIEYFGQR FAEGDKLADL GLDYIKVHPS YVHGIANNPG NQEFLKGLCS
610 620 630
VARNFGIVVI ALGVESEADL PLLASLGFDG MTGPGVK