Descriptions

Ubiquitin conjugating enzyme E2 S (UBE2S) is a protein that plays a key role in accepting ubiquitin from the E1 complex and catalyzing its covalent attachment to other proteins. Dimerization regulates UBE2S by preventing autoubiquitination, thus stabilizing the protein and allowing it to inhibit premature ubiquitin chain elongation during the cell cycle. The autoinhibition is mediated by blocking the ubiquitin-binding sites in UBC domain, which are essential for its E2 activity. The C-helix of UBE2S engages the APC/C for chain elongation, blocking the promotion of UBE2S autoinhibition through dimerization achieved by C-helix.

Autoinhibitory domains (AIDs)

Target domain

1-156 (UBC domain)

Relief mechanism

PTM

Assay

Structural analysis, Mutagenesis experiment

Accessory elements

No accessory elements

Autoinhibited structure

Activated structure

10 structures for Q16763

Entry ID Method Resolution Chain Position Source
1ZDN X-ray 193 A A/B 1-156 PDB
5BNB X-ray 249 A A/B/C/D 1-156 PDB
5L9T EM 640 A T 1-222 PDB
6QH3 X-ray 290 A A/B 1-156 PDB
6QHK X-ray 196 A A/B 1-156 PDB
6S96 X-ray 218 A A/B 1-156 PDB
6S98 X-ray 155 A A/B 1-156 PDB
7AHF X-ray 215 A A/B 1-156 PDB
8TAU EM 350 A E 205-222 PDB
AF-Q16763-F1 Predicted AlphaFoldDB

224 variants for Q16763

Variant ID(s) Position Change Description Diseaes Association Provenance
rs756893985 4 N>I No ExAC
TOPMed
gnomAD
rs756893985 4 N>S No ExAC
TOPMed
gnomAD
rs756893985 4 N>T No ExAC
TOPMed
gnomAD
rs2090099963 5 V>M No TOPMed
gnomAD
rs1452269907 9 P>A No TOPMed
gnomAD
rs552136391 9 P>L No gnomAD
rs552136391 9 P>R No gnomAD
rs1452269907 9 P>S No TOPMed
gnomAD
rs1453830867 10 P>L No gnomAD
COSM6152223 13 I>F Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA Cosmic
rs1195786947 13 I>T No gnomAD
rs374069290
COSM4921770
14 R>C Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA Cosmic
ESP
NCI-TCGA
TOPMed
rs150992671 14 R>L No ESP
ExAC
TOPMed
gnomAD
rs374069290 14 R>S No ESP
TOPMed
rs531211876 15 L>V No 1000Genomes
ExAC
TOPMed
gnomAD
rs921581783 18 K>E No TOPMed
rs1568442369 19 E>V No Ensembl
rs767514205 21 T>A No ExAC
TOPMed
gnomAD
rs762040182 21 T>M No ExAC
TOPMed
gnomAD
rs2123317306 22 T>I No Ensembl
rs370647044 23 L>V No ESP
rs1308392428 24 T>I No TOPMed
gnomAD
rs1030465280 25 A>T No TOPMed
gnomAD
rs1234661620 26 D>E No gnomAD
rs1288541692 27 P>L No TOPMed
gnomAD
rs2090099388 29 D>N No TOPMed
rs762797582 34 F>L No ExAC
TOPMed
gnomAD
rs2090099325 35 P>A No Ensembl
rs2090099325 35 P>S No Ensembl
rs1286125979 36 N>I No TOPMed
gnomAD
rs139337996 36 N>K No 1000Genomes
ExAC
TOPMed
gnomAD
rs376302634 37 E>G No ESP
ExAC
TOPMed
gnomAD
rs1299385628 37 E>K Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA
TOPMed
gnomAD
rs745825218 38 E>D No ExAC
TOPMed
gnomAD
rs770350118 39 D>G No ExAC
TOPMed
gnomAD
rs780705474 39 D>H No ExAC
TOPMed
gnomAD
rs770350118 39 D>V No ExAC
TOPMed
gnomAD
rs997693683 40 L>H No Ensembl
rs1251231304 40 L>V No TOPMed
rs1439506585 41 T>S No TOPMed
gnomAD
rs2090099057 45 V>I No TOPMed
rs187433678 46 T>A No 1000Genomes
rs2090099014 48 E>K No TOPMed
gnomAD
rs2090083578 52 G>E No Ensembl
rs746549935 52 G>W No ExAC
gnomAD
rs1286505172 59 L>V No gnomAD
rs2090083485 60 F>S No gnomAD
rs747823368 61 R>C No ExAC
gnomAD
rs780505915 61 R>H No ExAC
TOPMed
gnomAD
rs1402132763 62 M>I No TOPMed
rs2090083430 62 M>L No TOPMed
rs868786422 63 K>E No Ensembl
rs1415474642 63 K>T No TOPMed
gnomAD
rs1265652780 71 P>L No gnomAD
rs2090083301 72 A>D No Ensembl
rs1393368757 73 S>F No TOPMed
gnomAD
rs2090083229 76 K>R No TOPMed
rs2090083194 78 Y>F No TOPMed
rs1308036650 80 L>V No TOPMed
gnomAD
rs781611407 86 P>L No ExAC
TOPMed
gnomAD
rs758572803 88 V>M No ExAC
gnomAD
rs1049501918 89 G>V No Ensembl
rs765011011
COSM3797556
90 A>S Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA Cosmic
ExAC
TOPMed
gnomAD
rs765011011 90 A>T No ExAC
TOPMed
gnomAD
rs2090082886 91 N>H No gnomAD
rs540315809 91 N>S No 1000Genomes
ExAC
TOPMed
gnomAD
rs766266228 92 G>D No ExAC
gnomAD
COSM5572035
rs1350509514
96 V>I Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA Cosmic
NCI-TCGA
TOPMed
gnomAD
rs1439694374 97 N>S No TOPMed
gnomAD
rs747733579 98 V>M Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No ExAC
NCI-TCGA
TOPMed
gnomAD
rs2090082726 100 K>E No gnomAD
rs774217206 100 K>R No ExAC
gnomAD
rs770184703 102 D>E No ExAC
gnomAD
TCGA novel 102 D>N Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA
rs2090082684 104 T>M No TOPMed
TCGA novel 105 A>T Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA
rs781704539 108 G>D No ExAC
gnomAD
rs1400054219 110 R>* No TOPMed
gnomAD
rs1382629460 111 H>Q No TOPMed
gnomAD
rs1330328877 112 V>A No TOPMed
gnomAD
rs771304310 112 V>I No ExAC
TOPMed
gnomAD
rs2090060796 115 T>I No Ensembl
rs1600318089 115 T>P No Ensembl
rs573318166 117 K>R No 1000Genomes
ExAC
TOPMed
gnomAD
rs1600318065 122 H>P No Ensembl
rs2090060677 123 P>A No TOPMed
rs1600318061 124 N>T No Ensembl
rs746917958 125 P>A No ExAC
gnomAD
rs370428278 126 E>K No ESP
ExAC
TOPMed
gnomAD
rs1395975605 129 L>F No gnomAD
rs764747972 130 N>S No ExAC
gnomAD
rs753488671 131 E>* No ExAC
TOPMed
gnomAD
rs753488671 131 E>K No ExAC
TOPMed
gnomAD
rs1471768723 133 A>T No gnomAD
rs1369706768 133 A>V Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA
gnomAD
rs1600317988 134 G>A No Ensembl
rs2090060274 134 G>S No TOPMed
rs1235935851 135 R>C Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA
gnomAD
rs762293175
COSM4127907
135 R>H Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA Cosmic
ExAC
NCI-TCGA
gnomAD
rs2090060157 136 L>P No TOPMed
gnomAD
rs763404918 138 L>F No ExAC
gnomAD
rs1569048131 140 N>D No Ensembl
rs775594881 141 Y>C No ExAC
TOPMed
gnomAD
rs775594881 141 Y>S No ExAC
TOPMed
gnomAD
rs2090060028 142 E>G No TOPMed
rs759766193 142 E>K No ExAC
gnomAD
rs759766193 142 E>Q No ExAC
gnomAD
rs374167114 145 A>T No ESP
gnomAD
rs1357491467 145 A>V No TOPMed
gnomAD
rs2090059924 146 A>T No TOPMed
rs771995980 147 R>P No ExAC
TOPMed
gnomAD
rs771995980 147 R>Q No ExAC
TOPMed
gnomAD
rs777458627 147 R>W Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No ExAC
NCI-TCGA
gnomAD
rs748048525 148 A>S No ExAC
rs778323528 149 R>C No ExAC
TOPMed
gnomAD
rs754546129 149 R>H No ExAC
TOPMed
gnomAD
rs757533997 155 H>Y No ExAC
gnomAD
rs1292690585 156 G>R No gnomAD
rs753261540 157 G>C No ExAC
TOPMed
gnomAD
rs765404886 157 G>D No ExAC
gnomAD
rs753261540 157 G>S No ExAC
TOPMed
gnomAD
rs771143319 158 A>D No ExAC
gnomAD
rs556845857 158 A>T No 1000Genomes
ExAC
TOPMed
gnomAD
TCGA novel 158 A>V Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA
rs1312646281 159 G>A No TOPMed
gnomAD
rs773001900 159 G>S No ExAC
TOPMed
gnomAD
rs1312646281 159 G>V No TOPMed
gnomAD
rs200933021 160 G>R No 1000Genomes
ExAC
TOPMed
gnomAD
rs768128796 161 P>L No ExAC
TOPMed
gnomAD
rs768128796 161 P>R No ExAC
TOPMed
gnomAD
rs778875694 161 P>S No ExAC
rs1207684429 162 S>G No TOPMed
rs748838927 162 S>R No ExAC
TOPMed
gnomAD
rs750061593 163 G>C No ExAC
TOPMed
gnomAD
rs750061593 163 G>R No ExAC
TOPMed
gnomAD
rs750061593 163 G>S No ExAC
TOPMed
gnomAD
rs778132592 163 G>V No ExAC
gnomAD
rs758756486 165 A>T No ExAC
TOPMed
gnomAD
rs765896389 166 E>K No ExAC
TOPMed
gnomAD
rs1034316727 167 A>S No Ensembl
rs766382400 168 G>D No ExAC
TOPMed
gnomAD
rs753918789 168 G>S No ExAC
TOPMed
gnomAD
rs766382400 168 G>V No ExAC
TOPMed
gnomAD
rs767327662 169 R>G No ExAC
TOPMed
gnomAD
rs534399153 169 R>P No 1000Genomes
ExAC
TOPMed
gnomAD
rs534399153 169 R>Q No 1000Genomes
ExAC
TOPMed
gnomAD
rs767327662 169 R>W No ExAC
TOPMed
gnomAD
rs774238958 170 A>T No ExAC
TOPMed
gnomAD
rs1217946445 170 A>V No gnomAD
rs1338267762 172 A>T No TOPMed
gnomAD
rs768543897 173 S>G No ExAC
gnomAD
rs1306615876 173 S>N No TOPMed
rs768543897 173 S>R No ExAC
gnomAD
rs749248836 174 G>D No ExAC
gnomAD
rs749248836 174 G>V No ExAC
gnomAD
rs2090058877 175 T>I No Ensembl
RCV000950018
rs61748180
176 E>A No ClinVar
1000Genomes
ExAC
TOPMed
dbSNP
gnomAD
rs745530942 177 A>D No ExAC
TOPMed
gnomAD
rs1415815212 177 A>T No TOPMed
gnomAD
rs745530942 177 A>V No ExAC
TOPMed
gnomAD
rs780766273 179 S>C No ExAC
gnomAD
rs780766273 179 S>F No ExAC
gnomAD
rs377751817 181 D>N No 1000Genomes
ESP
ExAC
TOPMed
gnomAD
rs779440236 182 P>S No ExAC
TOPMed
gnomAD
rs755484248 183 G>R No ExAC
gnomAD
rs2090058568 184 A>T No TOPMed
gnomAD
rs1373745648 184 A>V No gnomAD
rs1212921567 185 P>A No TOPMed
gnomAD
rs766472486 186 G>R No ExAC
TOPMed
gnomAD
rs762051776 187 G>A No ExAC
TOPMed
gnomAD
rs2090058388 187 G>C No TOPMed
rs762051776 187 G>D No ExAC
TOPMed
gnomAD
rs2090058388 187 G>S No TOPMed
rs762051776 187 G>V No ExAC
TOPMed
gnomAD
rs201696148 188 P>L No 1000Genomes
ExAC
TOPMed
gnomAD
rs201696148 188 P>Q No 1000Genomes
ExAC
TOPMed
gnomAD
rs953767072 188 P>S Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA
gnomAD
rs762811480 189 G>E No ExAC
gnomAD
rs1281856284 189 G>R No gnomAD
rs897520466
COSM3539451
190 G>R Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA Cosmic
NCI-TCGA
gnomAD
rs745422668 192 E>K No ExAC
gnomAD
COSM6152224 193 G>D Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No NCI-TCGA Cosmic
rs1318615162 193 G>V No TOPMed
gnomAD
rs2090058018 195 M>I No TOPMed
gnomAD
rs746669366 195 M>T No ExAC
gnomAD
rs770655715 195 M>V Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No ExAC
NCI-TCGA
gnomAD
rs1437182817 196 A>T No TOPMed
rs2090057914 199 H>R No TOPMed
rs994456561 199 H>Y No TOPMed
gnomAD
rs1005962215 201 G>V No Ensembl
rs749798764 202 E>K No ExAC
TOPMed
gnomAD
rs780473933 203 R>C No ExAC
gnomAD
rs756187319 203 R>H No ExAC
TOPMed
gnomAD
rs757414025 204 D>G No ExAC
TOPMed
gnomAD
rs767659246 204 D>H No ExAC
TOPMed
gnomAD
rs767659246 204 D>N No ExAC
TOPMed
gnomAD
rs767659246 204 D>Y No ExAC
TOPMed
gnomAD
rs1379223748 206 K>N No gnomAD
rs2090057706 206 K>Q No Ensembl
rs1444111571 208 A>T No TOPMed
gnomAD
rs373412596 208 A>V No 1000Genomes
ESP
ExAC
TOPMed
gnomAD
rs2090057565 209 A>T No TOPMed
gnomAD
rs762799159 209 A>V No ExAC
TOPMed
gnomAD
rs752661607 211 K>E No ExAC
TOPMed
gnomAD
rs1487657978 211 K>R No TOPMed
gnomAD
rs1407201235 213 T>A No TOPMed
gnomAD
rs376584188 213 T>K No ESP
ExAC
TOPMed
gnomAD
rs376584188 213 T>M No ESP
ExAC
TOPMed
gnomAD
rs1437987468 214 D>E No TOPMed
gnomAD
rs1600317397 215 K>E No Ensembl
rs770567371 216 K>Q No ExAC
gnomAD
rs528548172 217 R>G No 1000Genomes
ExAC
TOPMed
gnomAD
rs769119945 217 R>Q No ExAC
TOPMed
gnomAD
rs528548172 217 R>W No 1000Genomes
ExAC
TOPMed
gnomAD
rs749653893 218 A>S No ExAC
TOPMed
gnomAD
rs780497000 218 A>V Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No ExAC
NCI-TCGA
gnomAD
rs559435005 220 R>Q Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] No 1000Genomes
ExAC
NCI-TCGA
TOPMed
gnomAD
rs781182726 220 R>W No ExAC
gnomAD
rs953632326 221 R>Q No TOPMed
rs1311954672 221 R>W No gnomAD
rs2090057114 222 L>P No Ensembl
rs1392371922 222 L>V No gnomAD
rs2123306894 223 L>E No Ensembl
rs1294721857 223 L>L No Ensembl

No associated diseases with Q16763

2 regional properties for Q16763

Type Name Position InterPro Accession
domain Ubiquitin-conjugating enzyme E2 11 - 157 IPR000608
active_site Ubiquitin-conjugating enzyme, active site 84 - 99 IPR023313

Functions

4 GO annotations of cellular component

Name Definition
anaphase-promoting complex A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis. Substrate recognition by APC occurs through degradation signals, the most common of which is termed the Dbox degradation motif, originally discovered in cyclin B.
cytosol The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
nucleoplasm That part of the nuclear content other than the chromosomes or the nucleolus.
nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

4 GO annotations of molecular function

Name Definition
anaphase-promoting complex binding Binding to an anaphase-promoting complex. A ubiquitin ligase complex that degrades mitotic cyclins and anaphase inhibitory protein, thereby triggering sister chromatid separation and exit from mitosis.
ATP binding Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
ubiquitin conjugating enzyme activity Isoenergetic transfer of ubiquitin from one protein to another via the reaction X-ubiquitin + Y -> Y-ubiquitin + X, where both the X-ubiquitin and Y-ubiquitin linkages are thioester bonds between the C-terminal glycine of ubiquitin and a sulfhydryl side group of a cysteine residue.
ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.

13 GO annotations of biological process

Name Definition
anaphase-promoting complex-dependent catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome.
cell division The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
exit from mitosis The cell cycle transition where a cell leaves M phase and enters a new G1 phase. M phase is the part of the mitotic cell cycle during which mitosis and cytokinesis take place.
free ubiquitin chain polymerization The process of creating free ubiquitin chains, compounds composed of a large number of ubiquitin monomers. These chains are not conjugated to a protein.
positive regulation of ubiquitin protein ligase activity Any process that activates or increases the frequency, rate or extent of ubiquitin protein ligase activity.
protein K11-linked ubiquitination A protein ubiquitination process in which ubiquitin monomers are attached to a protein, and then ubiquitin polymers are formed by linkages between lysine residues at position 11 of the ubiquitin monomers. K11-linked polyubiquitination targets the substrate protein for degradation. The anaphase-promoting complex promotes the degradation of mitotic regulators by assembling K11-linked polyubiquitin chains.
protein K27-linked ubiquitination A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 27 of the ubiquitin monomers, is added to a protein.
protein K29-linked ubiquitination A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 29 of the ubiquitin monomers, is added to a protein. K29-linked ubiquitination targets the substrate protein for degradation.
protein K6-linked ubiquitination A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 6 of the ubiquitin monomers, is added to a protein. K6-linked ubiquitination is involved in DNA repair.
protein K63-linked ubiquitination A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is added to a protein. K63-linked ubiquitination does not target the substrate protein for degradation, but is involved in several pathways, notably as a signal to promote error-free DNA postreplication repair.
protein modification process The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
protein polyubiquitination Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.

17 homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
Q1RML1 UBE2S Ubiquitin-conjugating enzyme E2 S Bos taurus (Bovine) SS
Q9VX25 CG8188 Ubiquitin-conjugating enzyme E2 S Drosophila melanogaster (Fruit fly) SS
Q9NPD8 UBE2T Ubiquitin-conjugating enzyme E2 T Homo sapiens (Human) PR
Q96LR5 UBE2E2 Ubiquitin-conjugating enzyme E2 E2 Homo sapiens (Human) PR
Q969T4 UBE2E3 Ubiquitin-conjugating enzyme E2 E3 Homo sapiens (Human) PR
Q9Y385 UBE2J1 Ubiquitin-conjugating enzyme E2 J1 Homo sapiens (Human) PR
Q9H8T0 AKTIP AKT-interacting protein Homo sapiens (Human) PR
P61086 UBE2K Ubiquitin-conjugating enzyme E2 K Homo sapiens (Human) PR
O00762 UBE2C Ubiquitin-conjugating enzyme E2 C Homo sapiens (Human) PR
O14933 UBE2L6 Ubiquitin/ISG15-conjugating enzyme E2 L6 Homo sapiens (Human) PR
Q7Z7E8 UBE2Q1 Ubiquitin-conjugating enzyme E2 Q1 Homo sapiens (Human) PR
A1L167 UBE2QL1 Ubiquitin-conjugating enzyme E2Q-like protein 1 Homo sapiens (Human) PR
Q921J4 Ube2s Ubiquitin-conjugating enzyme E2 S Mus musculus (Mouse) SS
B5DFI8 Ube2s Ubiquitin-conjugating enzyme E2 S Rattus norvegicus (Rat) SS
Q9FF66 UBC22 Ubiquitin-conjugating enzyme E2 22 Arabidopsis thaliana (Mouse-ear cress) SS
Q28F89 ube2s Ubiquitin-conjugating enzyme E2 S Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) SS
Q4V908 ube2s Ubiquitin-conjugating enzyme E2 S Danio rerio (Zebrafish) (Brachydanio rerio) SS
10 20 30 40 50 60
MNSNVENLPP HIIRLVYKEV TTLTADPPDG IKVFPNEEDL TDLQVTIEGP EGTPYAGGLF
70 80 90 100 110 120
RMKLLLGKDF PASPPKGYFL TKIFHPNVGA NGEICVNVLK RDWTAELGIR HVLLTIKCLL
130 140 150 160 170 180
IHPNPESALN EEAGRLLLEN YEEYAARARL LTEIHGGAGG PSGRAEAGRA LASGTEASST
190 200 210 220
DPGAPGGPGG AEGPMAKKHA GERDKKLAAK KKTDKKRALR RL