Q16281
Gene name |
CNGA3 (CNCG3) |
Protein name |
Cyclic nucleotide-gated cation channel alpha-3 |
Names |
Cone photoreceptor cGMP-gated channel subunit alpha, Cyclic nucleotide-gated channel alpha-3, CNG channel alpha-3, CNG-3, CNG3 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:1261 |
EC number |
|
Protein Class |
|

Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure

Activated structure

11 structures for Q16281
Entry ID | Method | Resolution | Chain | Position | Source |
---|---|---|---|---|---|
3SWY | X-ray | 190 A | A/B/C | 626-669 | PDB |
7RHS | EM | 293 A | A/B/C | 1-694 | PDB |
8ETP | EM | 352 A | A/B/C | 1-694 | PDB |
8EU3 | EM | 362 A | A/B/C | 1-694 | PDB |
8EUC | EM | 361 A | A/B/C | 1-694 | PDB |
8EV8 | EM | 311 A | A/B/C | 151-694 | PDB |
8EV9 | EM | 333 A | A/B/C | 151-694 | PDB |
8EVA | EM | 333 A | A/B/C | 151-694 | PDB |
8EVB | EM | 360 A | A/B/C | 151-694 | PDB |
8EVC | EM | 333 A | A/B/C | 151-694 | PDB |
AF-Q16281-F1 | Predicted | AlphaFoldDB |
718 variants for Q16281
Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
---|---|---|---|---|---|
CA1793544 RCV001518967 RCV001137361 rs143489966 |
20 | T>I | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC dbSNP gnomAD |
RCV001002957 RCV000392354 CA1793545 rs777509481 RCV001865226 |
23 | R>* | Achromatopsia 2 Achromatopsia Achromatopsia 2 (achm2) [ClinVar, Ensembl] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
RCV001856756 rs746563618 RCV001137362 CA1793546 |
23 | R>Q | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs769433253 RCV001295863 RCV001137363 CA1793550 RCV002556922 |
27 | R>H | Achromatopsia 2 Variant assessed as Somatic; 4.632e-05 impact. Inborn genetic diseases [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs141086649 CA1793578 RCV000337205 RCV001426518 |
37 | S>L | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
RCV000512663 rs62156348 RCV001139596 VAR_047565 CA1793589 RCV000393659 |
48 | P>L | Achromatopsia 2 Achromatopsia 2 (achm2) [ClinVar, Ensembl] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
rs1558811557 RCV000735808 RCV001002959 |
51 | A>missing | Achromatopsia 2 Achromatopsia [ClinVar] | Yes |
ClinVar dbSNP |
rs368962370 CA1793596 RCV001139598 |
52 | M>V | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
RCV001139600 rs61756692 RCV001064853 CA1793612 |
71 | A>T | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
rs149230055 COSM2914019 CA1793676 RCV002563243 RCV001234481 |
81 | R>H | Variant assessed as Somatic; 0.0 impact. pancreas Inborn genetic diseases [NCI-TCGA, Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar 1000Genomes ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs757470958 CA1793679 RCV000225523 RCV001854800 |
83 | W>* | Retinal dystrophy [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
RCV000381532 rs114108462 RCV001140359 CA1793686 |
95 | P>L | Achromatopsia 2 Achromatopsia 2 (achm2) [ClinVar, Ensembl] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV001729793 rs1692508715 RCV001862817 RCV001074037 |
111 | S>* | Achromatopsia 2 Retinal dystrophy [ClinVar] | Yes |
ClinVar dbSNP |
rs1692509021 RCV001067275 RCV001729789 |
114 | E>* | Achromatopsia 2 [ClinVar] | Yes |
ClinVar dbSNP |
rs142837782 RCV000884300 CA1793704 RCV001729732 |
118 | Q>R | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
rs994092587 CA52621295 RCV001140360 |
125 | E>K | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
rs144099488 CA1793739 RCV001232192 RCV001140362 RCV002556991 |
147 | T>R | Achromatopsia 2 Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP TOPMed dbSNP gnomAD |
RCV000382107 CA1793764 RCV001140364 VAR_010902 rs34314205 RCV000948604 |
153 | T>M | Achromatopsia 2 Achromatopsia 2 (achm2) [ClinVar, Ensembl] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV001142221 CA1793767 rs199631623 RCV002559379 |
157 | D>E | Achromatopsia 2 Achromatopsia 2 (achm2) [ClinVar, Ensembl] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
RCV002524677 COSM1201523 RCV001142222 rs138934573 CA1793768 RCV000416132 |
158 | A>V | Achromatopsia 2 large_intestine Inborn genetic diseases [ClinVar, Cosmic] | Yes |
ClinGen cosmic curated ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV001142223 RCV001858932 CA1793771 rs373542579 |
160 | V>M | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs747447519 VAR_047566 CA1793775 |
162 | D>V | ACHM2 [UniProt] | Yes |
ClinGen UniProt ExAC dbSNP gnomAD |
rs104893612 VAR_010903 CA254819 RCV000010081 |
163 | P>L | Achromatopsia 2 Achromatopsia 2 (achm2) ACHM2 [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
rs1692739030 RCV002549227 RCV001199462 |
167 | L>missing | Achromatopsia [ClinVar] | Yes |
ClinVar dbSNP |
rs762773298 CA347831544 RCV000578710 RCV001729643 |
171 | W>* | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
CA1793779 rs762773298 VAR_071436 |
171 | W>C | ACHM2; also found in patients with cone-rod dystrophy [UniProt] | Yes |
ClinGen UniProt ExAC TOPMed dbSNP gnomAD |
VAR_047567 | 181 | Y>C | ACHM2 [UniProt] | Yes | UniProt |
VAR_047568 | 182 | N>Y | ACHM2 [UniProt] | Yes | UniProt |
rs779715055 RCV000308354 CA1793786 |
185 | L>V | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
VAR_047569 | 186 | L>F | ACHM2 [UniProt] | Yes | UniProt |
rs1574385431 CA347831642 RCV001002719 |
187 | I>T | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
CA1793817 VAR_047570 RCV001092738 RCV001074653 rs761554853 RCV001270463 |
191 | C>Y | Achromatopsia 2 Retinal dystrophy Achromatopsia 2 (achm2) ACHM2 [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
VAR_047571 | 194 | E>K | ACHM2 [UniProt] | Yes | UniProt |
rs1692797695 RCV001142225 |
195 | L>P | Achromatopsia 2 [ClinVar] | Yes |
ClinVar dbSNP |
rs1330263985 CA347831721 RCV001029776 |
197 | S>P | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
VAR_021963 rs2271041 CA1793821 RCV001140913 RCV000438002 |
198 | E>K | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
rs1692799480 RCV001199463 |
209 | S>P | Cone dystrophy [ClinVar] | Yes |
ClinVar dbSNP |
RCV001075512 rs1692800358 |
217 | D>H | Retinal dystrophy [ClinVar] | Yes |
ClinVar dbSNP |
RCV001002961 RCV002549195 CA1793840 rs138958917 |
223 | R>G | Inborn genetic diseases Achromatopsia Achromatopsia 2 (achm2) [ClinVar, Ensembl] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
VAR_071438 RCV001073423 CA1793842 RCV001092739 rs762668060 |
223 | R>Q | Retinal dystrophy ACHM2 [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
RCV000594877 RCV000595551 RCV001270465 RCV001074687 CA1793841 VAR_047572 rs138958917 |
223 | R>W | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. Retinal dystrophy Achromatopsia Achromatopsia 2 (achm2) ACHM2; also found in patients with cone-rod dystrophy [ClinVar, NCI-TCGA, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
VAR_047573 | 224 | T>R | ACHM2 [UniProt] | Yes | UniProt |
RCV000273159 RCV001512908 CA1793876 VAR_047574 rs147415641 RCV000778101 RCV000733679 |
228 | E>K | Achromatopsia 2 Achromatopsia Achromatopsia 2 (achm2) ACHM2; unknown pathological significance; the dose-response relationship for cGMP-activation is not significantly different from that of wild-type CNGA3; the dose-response relationship of the mutant CNGA3 + CNGB3 is similar to that of the wild-type protein; the channel density into the cell membrane is considerably improved by decreasing the cultivation temperature [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
rs1692898861 RCV001199464 |
235 | D>V | Achromatopsia [ClinVar] | Yes |
ClinVar dbSNP |
COSM1318859 VAR_071440 RCV000180215 CA247589 rs148616345 RCV001137480 |
247 | T>M | Achromatopsia 2 haematopoietic_and_lymphoid_tissue Achromatopsia 2 (achm2) [ClinVar, Cosmic, Ensembl] | Yes |
ClinGen cosmic curated ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
VAR_047575 | 249 | F>S | ACHM2 [UniProt] | Yes | UniProt |
RCV001268707 rs756172609 RCV002283538 |
260 | D>missing | Achromatopsia 2 [ClinVar] | Yes |
ClinVar dbSNP |
RCV000850497 VAR_047576 RCV001384601 RCV001073600 rs374258471 CA1793891 |
260 | D>N | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. Retinal dystrophy Achromatopsia 2 (achm2) ACHM2; also found in patients with cone-rod dystrophy [ClinVar, NCI-TCGA, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
VAR_047577 RCV001075212 CA52635235 rs943314733 |
263 | Y>D | Retinal dystrophy ACHM2 [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt TOPMed dbSNP |
rs536335712 RCV001235929 RCV000593473 CA1793895 |
266 | V>M | Achromatopsia [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC dbSNP gnomAD |
rs781673067 VAR_047578 CA52635247 |
267 | G>D | ACHM2 [UniProt] | Yes |
ClinGen UniProt Ensembl dbSNP |
RCV001002962 RCV001074985 RCV000734467 rs149802213 COSM3736271 CA1793899 RCV001261952 |
271 | P>A | Achromatopsia 2 skin Retinal dystrophy Achromatopsia [ClinVar, Cosmic] | Yes |
ClinGen cosmic curated ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
VAR_071442 | 274 | R>K | ACHM2 [UniProt] | Yes | UniProt |
RCV001579698 RCV000984997 rs368513591 CA1793901 |
274 | R>S | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
CA270749 RCV000144419 rs199474697 RCV001543590 |
276 | N>S | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
rs104893620 CA254827 VAR_047579 RCV001092740 COSM1248533 RCV000010089 RCV000596449 RCV000626801 |
277 | R>C | Macular degeneration Achromatopsia 2 oesophagus large_intestine Achromatopsia Achromatopsia 2 (achm2) ACHM2; also found in patients with cone-rod dystrophy; does not form functional homomeric or heteromeric channels [ClinVar, Cosmic, Ensembl, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt ESP ExAC TOPMed dbSNP gnomAD |
VAR_047580 RCV001092741 RCV000985209 CA52635286 RCV001073764 rs778114016 |
277 | R>H | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. Retinal dystrophy ACHM2; also found in patients with cone-rod dystrophy [ClinVar, NCI-TCGA, UniProt] | Yes |
ClinGen ClinVar UniProt NCI-TCGA dbSNP gnomAD |
rs763421555 CA1793904 VAR_071443 |
278 | L>P | ACHM2 [UniProt] | Yes |
ClinGen UniProt ExAC dbSNP gnomAD |
RCV001075581 RCV000010083 COSM1580002 CA254821 RCV001002963 RCV001050960 VAR_010904 rs104893614 |
283 | R>Q | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. central_nervous_system Achromatopsia Retinal dystrophy Achromatopsia 2 (achm2) ACHM2; does not reveal any detectable calcium influx upon agonist application at 37 degrees Celsius; the channel function could be restored by incubating the transfected cells at 27 degrees Celsius; the dose-response relationship for cGMP-activation is not significantly different from that of wild-type CNGA3; the dose-response relationship of the mutant CNGA3 + CNGB3 is similar to that of the wild-type protein; a substantial reduction of macroscopic cGMP maximum current to only one-third of the mean value for wild-type CNGA3 + CNGB3 is observed for the mutant CNGA3 + CNGB3; the channel density into the cell membrane is considerably improved by decreasing the cultivation temparature [ClinVar, NCI-TCGA, Cosmic, Ensembl, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt 1000Genomes ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
CA254820 COSM1410188 rs104893613 RCV000010082 VAR_010905 RCV001222182 RCV000415133 |
283 | R>W | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. large_intestine Achromatopsia 2 (achm2) ACHM2; also found in patients with cone-rod dystrophy [ClinVar, NCI-TCGA, Cosmic, Ensembl, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
CA1793912 RCV000597637 COSM1410189 rs199837807 RCV001066140 |
290 | R>H | large_intestine Achromatopsia [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
VAR_010906 RCV000010085 CA254822 rs104893616 RCV001075211 |
291 | T>R | Achromatopsia 2 Retinal dystrophy Achromatopsia 2 (achm2) ACHM2; does not reveal any detectable calcium influx upon agonist application at 37 degrees Celsius; the channel function could be restored by incubating the transfected cells at 27 degrees Celsius; the K(1/2) value is shifted toward a higher cGMP concentration by a factor of 1.8; no positive influence of the CNGB3 subunit in the cGMP sensitivity is observed; a substantial reduction of macroscopic cGMP maximum current to only one-third of the mean value for wild-type CNGA3 + CNGB3 is observed for the mutant CNGA3 + CNGB3; the channel density into the cell membrane is considerably improved by decreasing the cultivation temparature [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt ESP dbSNP |
rs1692904914 RCV001270467 |
301 | F>* | Achromatopsia 2 [ClinVar] | Yes |
ClinVar dbSNP |
rs1574390600 CA347832393 RCV001002964 |
302 | R>G | Achromatopsia [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV001366668 CA1793918 RCV001199465 rs749853484 |
302 | R>S | Cone dystrophy [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
rs1305790956 CA347832401 RCV001075288 |
303 | I>F | Retinal dystrophy [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
VAR_047581 | 312 | I>del | ACHM2 [UniProt] | Yes | UniProt |
RCV001074832 RCV000786011 RCV001389647 rs777878533 |
314 | I>missing | Achromatopsia Retinal dystrophy [ClinVar] | Yes |
ClinVar dbSNP |
rs753625117 RCV000171300 CA236061 RCV001823124 |
319 | C>R | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
VAR_071444 | 322 | F>S | ACHM2 [UniProt] | Yes | UniProt |
VAR_075493 | 323 | A>D | ACHM2 [UniProt] | Yes | UniProt |
CA1793927 RCV000505161 RCV000278423 rs146195955 RCV001074859 RCV000761548 |
323 | A>P | Achromatopsia 2 Cone dystrophy Retinal dystrophy [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
rs752170364 RCV000376215 CA1793929 |
328 | I>T | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
RCV001268815 rs1558820134 CA347832576 RCV000786010 |
329 | G>C | Achromatopsia [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
CA347832661 RCV001074652 RCV001683732 VAR_047582 rs1227761587 |
341 | S>P | Retinal dystrophy ACHM2 [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt dbSNP gnomAD |
RCV000274963 rs780411290 RCV000764450 CA1793936 |
345 | H>R | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
RCV001074830 rs1692908768 RCV001300780 |
350 | R>G | Retinal dystrophy [ClinVar] | Yes |
ClinVar dbSNP |
rs1574390811 RCV001029799 CA347832803 |
362 | T>I | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
rs766637612 VAR_047583 CA1793944 |
369 | T>S | ACHM2 [UniProt] | Yes |
ClinGen UniProt ExAC dbSNP gnomAD |
RCV002542861 RCV001270469 rs958089715 |
372 | P>* | Achromatopsia 2 [ClinVar] | Yes |
ClinVar dbSNP |
CA347832857 rs1464167194 RCV002267757 |
372 | P>A | Cone-rod dystrophy [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
VAR_047584 RCV001002966 RCV001060342 CA347832856 rs1464167194 RCV001270466 |
372 | P>S | Achromatopsia 2 Achromatopsia ACHM2 [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt TOPMed dbSNP gnomAD |
RCV001729792 RCV001073683 CA1793951 rs552553452 RCV001228298 |
373 | V>M | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. Retinal dystrophy [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar 1000Genomes ExAC NCI-TCGA TOPMed dbSNP gnomAD |
RCV001352956 CA347832880 RCV001362275 rs1377555853 RCV001074023 |
376 | E>K | Achromatopsia 2 Retinal dystrophy Achromatopsia 2 (achm2) [ClinVar, Ensembl] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
rs1692911763 VAR_047585 RCV001211278 |
380 | F>S | ACHM2 [UniProt] | Yes |
ClinVar UniProt dbSNP |
CA52635522 rs916035276 VAR_047586 |
401 | S>P | ACHM2 [UniProt] | Yes |
ClinGen UniProt dbSNP gnomAD |
rs1553450734 CA347833076 VAR_047587 RCV000593624 RCV001048868 |
406 | M>T | Achromatopsia ACHM2 [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
RCV001052998 RCV000010087 VAR_010910 rs137852608 RCV001075289 CA254824 |
410 | R>W | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. Retinal dystrophy Achromatopsia 2 (achm2) ACHM2 [ClinVar, NCI-TCGA, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC NCI-TCGA TOPMed dbSNP gnomAD |
CA347833157 rs1162745859 RCV001137483 |
418 | D>E | Achromatopsia 2 [ClinVar] | Yes |
ClinGen gnomAD ClinVar dbSNP |
RCV001199461 rs371558158 |
419 | S>P | Achromatopsia [ClinVar] | Yes |
ClinVar dbSNP |
RCV001074460 rs1692915919 |
424 | M>T | Retinal dystrophy [ClinVar] | Yes |
ClinVar dbSNP |
RCV000596729 RCV000596662 RCV001075180 VAR_047588 RCV000678541 RCV001814192 RCV001196267 CA1793976 rs141386891 |
427 | R>C | Achromatopsia 2 Retinal dystrophy Achromatopsia ACHM2 [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV001270880 CA1793978 rs771172885 |
427 | R>L | Achromatopsia 2 Achromatopsia 2 (achm2) [ClinVar, Ensembl] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
rs1692916541 RCV001270468 |
429 | V>A | Achromatopsia 2 [ClinVar] | Yes |
ClinVar dbSNP |
RCV001002967 rs1574391103 |
432 | D>missing | Achromatopsia [ClinVar] | Yes |
ClinVar dbSNP |
CA1793985 rs767083685 VAR_071447 |
436 | R>Q | ACHM2 [UniProt] | Yes |
ClinGen UniProt ExAC TOPMed dbSNP gnomAD |
RCV001075358 RCV001042434 VAR_047589 RCV000010090 CA254828 RCV000591222 rs104893621 |
436 | R>W | Achromatopsia 2 Retinal dystrophy Achromatopsia Achromatopsia 2 (achm2) ACHM2; also found in patients with cone-rod dystrophy [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV000678542 rs1558820471 |
437 | V>missing | Achromatopsia 2 [ClinVar] | Yes |
ClinVar dbSNP |
COSM364506 CA1793986 RCV001784622 rs749842881 RCV001067274 VAR_047590 RCV001074971 |
439 | R>W | lung Achromatopsia 2 Retinal dystrophy Achromatopsia 2 (achm2) ACHM2; also found in patients with cone-rod dystrophy; does not reveal any detectable calcium influx upon agonist application at 37 degrees Celsius [Cosmic, ClinVar, Ensembl, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
rs1553450762 RCV000592559 RCV001729647 |
440 | W>missing | Achromatopsia 2 [ClinVar] | Yes |
ClinVar dbSNP |
CA347833298 RCV000594314 rs1553450764 |
440 | W>* | Achromatopsia [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV000267566 RCV001246923 rs190014426 CA1793990 |
448 | K>R | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
rs1692921014 RCV001729786 RCV001058801 |
465 | K>missing | Achromatopsia 2 [ClinVar] | Yes |
ClinVar dbSNP |
RCV000504772 VAR_047591 CA1794000 rs117522010 RCV001377934 |
469 | A>T | Cone dystrophy ACHM2; the dose-response relationship for cGMP-activation is shifted toward a lower cGMP concentration; the left shift in the dose-response relationship of the mutant CNGA3 is less distinctive than in homomeric channels with this mutation indicating a partial rescue effect of the CNGB3 subunit; is in large part located in the cell membrane at 37 and 27 degrees Celsius [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt 1000Genomes ExAC dbSNP gnomAD |
rs373954146 VAR_047592 CA1794001 |
471 | N>S | ACHM2; mutant CNGA3 alone or together with the CNGB3 subunit exhibit an increase in apparent affinity for cGMP and an increase in the relative agonist efficacy of cAMP compared with cGMP; cell surface expression levels is unchanged [UniProt] | Yes |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
VAR_047593 | 485 | D>V | ACHM2 [UniProt] | Yes | UniProt |
CA1794025 rs778000601 RCV001587263 RCV001233341 |
507 | D>G | Cone dystrophy [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
rs908111816 VAR_047594 CA347833740 |
510 | C>S | ACHM2 [UniProt] | Yes |
ClinGen UniProt TOPMed dbSNP gnomAD |
VAR_047595 | 513 | G>E | ACHM2 [UniProt] | Yes | UniProt |
VAR_047596 | 516 | G>E | ACHM2 [UniProt] | Yes | UniProt |
CA1794036 RCV000678543 rs199655686 RCV000225371 RCV000322792 |
519 | M>I | Achromatopsia 2 Retinal dystrophy [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
VAR_047597 | 522 | I>T | ACHM2 [UniProt] | Yes | UniProt |
VAR_047598 | 525 | G>D | ACHM2 [UniProt] | Yes | UniProt |
RCV001270464 VAR_066860 rs375928335 |
527 | L>M | Achromatopsia 2 found in a patient with Leber congenital amaurosis; unknown pathological significance [ClinVar, UniProt] | Yes |
ClinVar dbSNP UniProt |
rs779023431 RCV001075609 |
527 | L>P | Retinal dystrophy [ClinVar] | Yes |
ClinVar dbSNP |
RCV000010088 rs104893619 COSM77490 VAR_010907 RCV000352391 CA254826 RCV001002968 |
529 | V>M | Achromatopsia 2 ovary Variant assessed as Somatic; 0.0 impact. Achromatopsia Achromatopsia 2 (achm2) ACHM2; also found in patients with cone-rod dystrophy [ClinVar, Cosmic, NCI-TCGA, Ensembl, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
RCV001074601 RCV000325405 CA1794046 VAR_071448 rs775332304 |
533 | D>H | Retinal dystrophy probable disease-associated variant found in patients with cone-rod dystrophy [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC dbSNP gnomAD |
CA1794053 RCV000488165 RCV001002969 RCV001139697 rs116448158 |
540 | V>I | Achromatopsia 2 Achromatopsia Achromatopsia 2 (achm2) [ClinVar, Ensembl] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
VAR_071449 | 543 | D>del | ACHM2 [UniProt] | Yes | UniProt |
RCV001002970 RCV001074686 RCV000415000 RCV000010086 RCV001055558 CA254823 rs104893617 VAR_010908 |
547 | F>L | Achromatopsia 2 Achromatopsia Retinal dystrophy Achromatopsia 2 (achm2) ACHM2; does not reveal any detectable calcium influx upon agonist application at 37 degrees Celsius; the channel function could be restored by incubating the transfected cells at 27 degrees Celsius; the dose-response relationship for cGMP-activation is shifted toward a lower cGMP concentration; a substantial reduction of macroscopic cGMP maximum current to only one-third of the mean value for wild-type CNGA3 + CNGB3 is observed for the mutant CNGA3 + CNGB3; is in large part located in the cell membrane at 37 and 27 degrees Celsius [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
CA1794058 RCV001238057 rs781227859 RCV001002971 VAR_047599 |
548 | G>R | Achromatopsia ACHM2 [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
RCV001002972 RCV000010084 RCV001074603 RCV000169654 rs104893615 RCV001219847 CA199157 RCV002512958 VAR_010909 |
557 | G>R | Achromatopsia 2 Achromatopsia Inborn genetic diseases Retinal dystrophy Achromatopsia 2 (achm2) ACHM2; the K(1/2) value is shifted toward a higher cGMP concentration by a factor of 3.0; no positive influence of the CNGB3 subunit in the cGMP sensitivity is observed; average cGMP maximum current is decreased to half of the mean wild-type value for the mutant CNGA3 + CNGB3 [ClinVar, Ensembl, UniProt] | Yes |
ClinGen ClinVar UniProt ESP ExAC TOPMed dbSNP gnomAD |
rs370911601 RCV000372589 COSM1565914 RCV001861161 CA1794064 |
560 | S>L | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. large_intestine [ClinVar, NCI-TCGA, Cosmic] | Yes |
ClinGen cosmic curated ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
RCV001073296 rs1692930941 |
562 | N>K | Retinal dystrophy [ClinVar] | Yes |
ClinVar dbSNP |
RCV001353014 RCV000732338 CA1794066 rs150153987 |
563 | R>C | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. Achromatopsia 2 (achm2) [ClinVar, NCI-TCGA, Ensembl] | Yes |
ClinGen ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
RCV000254808 RCV001782754 CA1794067 RCV000504957 VAR_047600 rs552069173 RCV001074992 |
563 | R>H | Achromatopsia 2 Retinal dystrophy ACHM2; mutant CNGA3 alone or together with the CNGB3 subunit exhibit an increase in apparent affinity for cGMP and an increase in the relative agonist efficacy of cAMP compared with cGMP; cell surface expression levels is significantly reduced [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC TOPMed dbSNP gnomAD |
COSM1326906 RCV001075604 rs201747279 RCV001784638 CA1794070 VAR_047601 RCV001092744 |
565 | T>M | Achromatopsia 2 ovary large_intestine Retinal dystrophy ACHM2 [ClinVar, Cosmic, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt ESP ExAC TOPMed dbSNP gnomAD |
COSM137361 CA1794073 rs757167624 RCV001068677 RCV001729790 |
569 | R>C | Achromatopsia 2 ovary large_intestine skin [ClinVar, Cosmic] | Yes |
ClinGen cosmic curated ClinVar ExAC TOPMed dbSNP gnomAD |
rs201782746 RCV001068271 VAR_047602 COSM1248534 CA1794074 RCV001074829 |
569 | R>H | oesophagus Retinal dystrophy ACHM2 [Cosmic, ClinVar, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt ESP ExAC TOPMed dbSNP gnomAD |
VAR_047603 | 573 | Y>C | ACHM2 [UniProt] | Yes | UniProt |
RCV001858609 VAR_047604 CA1794087 RCV000984926 rs763041373 |
590 | E>K | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. ACHM2; also found in patients with cone-rod dystrophy; the dose-response relationship for cGMP-activation is shifted toward a lower cGMP concentration [ClinVar, NCI-TCGA, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC NCI-TCGA dbSNP gnomAD |
CA347834269 rs1374130283 RCV001729851 RCV001337534 |
592 | P>L | Achromatopsia 2 Variant assessed as Somatic; 0.0 impact. [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar NCI-TCGA TOPMed dbSNP gnomAD |
RCV000596359 VAR_047605 rs774676415 COSM3714326 CA1794089 |
593 | E>K | upper_aerodigestive_tract Achromatopsia ACHM2 [Cosmic, ClinVar, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt ExAC dbSNP gnomAD |
CA347834287 RCV001139699 rs1558821005 |
595 | K>R | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
CA1794093 RCV003166693 rs769370731 RCV001301225 |
603 | R>W | Variant assessed as Somatic; 0.0 impact. Inborn genetic diseases [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs144627146 RCV002545611 RCV001349467 CA1794100 |
613 | D>N | Variant assessed as Somatic; 0.0 impact. Inborn genetic diseases [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs886056489 RCV000338039 CA10614692 |
615 | E>D | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
rs546831778 CA1794106 RCV002563195 RCV001231009 |
621 | A>T | Variant assessed as Somatic; 0.0 impact. Inborn genetic diseases [NCI-TCGA, ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC NCI-TCGA TOPMed dbSNP gnomAD |
RCV001854801 rs878853359 RCV000225636 CA10581657 |
644 | F>S | Retinal dystrophy [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
COSM1024218 RCV002533897 CA1794118 RCV000762278 rs753184087 |
646 | R>C | endometrium Inborn genetic diseases [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar ExAC TOPMed dbSNP gnomAD |
RCV000293539 rs139368657 CA1794120 RCV001055423 |
650 | E>A | Achromatopsia [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
CA1794124 rs147293818 RCV001469273 RCV000348566 |
656 | M>I | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV002551519 CA1794126 rs191584433 RCV001042730 |
659 | K>T | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
CA1794130 RCV001140462 rs144715956 RCV001071995 |
661 | R>H | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
RCV001202143 RCV001075514 rs183838250 CA1794128 |
661 | R>S | Retinal dystrophy [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
rs148496805 CA1794131 RCV001466693 RCV001140463 |
669 | V>L | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
RCV000393717 CA1794138 rs754086920 |
684 | G>R | Achromatopsia 2 [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
rs774668101 CA1793534 |
2 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
rs774668101 CA1793535 |
2 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
rs767999739 CA1793536 |
2 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
CA347828676 rs1558808351 |
3 | K>R | No |
ClinGen Ensembl |
|
rs756106415 CA1793538 |
4 | I>F | No |
ClinGen ExAC gnomAD |
|
rs1454957750 CA347828760 |
7 | Q>H | No |
ClinGen TOPMed |
|
CA347828753 rs1158776443 |
7 | Q>R | No |
ClinGen TOPMed |
|
rs1443129647 CA347828774 |
8 | Y>* | No |
ClinGen TOPMed gnomAD |
|
CA52619797 rs901405708 |
9 | S>P | No |
ClinGen TOPMed gnomAD |
|
CA1793540 rs754054246 |
10 | H>L | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 11 | P>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1194219748 CA347828797 |
12 | S>C | No |
ClinGen gnomAD |
|
rs1454676757 CA347828825 |
16 | L>H | No |
ClinGen TOPMed |
|
CA347828821 rs1430615036 |
16 | L>V | No |
ClinGen gnomAD |
|
rs747940315 CA1793543 |
19 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
CA347828851 rs143489966 |
20 | T>N | No |
ClinGen 1000Genomes ESP ExAC gnomAD |
|
CA347828856 rs1402442627 |
21 | S>* | Achromatopsia 2 (achm2) [Ensembl] | No |
ClinGen TOPMed gnomAD |
rs1488486679 CA347828869 |
24 | D>N | No |
ClinGen Ensembl |
|
CA347828879 rs1399937926 |
25 | L>F | No |
ClinGen gnomAD |
|
rs776185461 CA1793548 |
26 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
RCV001240640 rs149069990 COSM175250 CA1793549 |
27 | R>C | Variant assessed as Somatic; 0.0 impact. large_intestine endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs149069990 CA347828890 |
27 | R>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA1793553 rs762107596 |
28 | A>P | No |
ClinGen ExAC gnomAD |
|
rs762107596 CA1793552 |
28 | A>T | No |
ClinGen ExAC gnomAD |
|
rs1213180679 CA347828912 |
30 | N>K | No |
ClinGen gnomAD |
|
rs1234096606 CA347828916 |
31 | G>C | No |
ClinGen TOPMed |
|
CA1793555 rs761220533 |
33 | S>I | No |
ClinGen ExAC gnomAD |
|
CA347828929 rs761220533 |
33 | S>N | No |
ClinGen ExAC gnomAD |
|
rs1217285901 CA347828937 |
34 | R>I | No |
ClinGen TOPMed gnomAD |
|
RCV000505144 RCV001236804 rs749036398 |
36 | H>missing | No |
ClinVar dbSNP |
|
rs1053293800 CA52620705 |
36 | H>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
rs755957184 RCV000594944 |
39 | S>missing | No |
ClinVar dbSNP |
|
COSM443429 CA1793581 rs763837833 |
41 | E>D | breast [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
rs535187464 RCV001325634 |
42 | T>A | No |
ClinVar dbSNP |
|
rs751367747 CA1793582 |
42 | T>I | No |
ClinGen ExAC gnomAD |
|
rs535187464 CA52620706 |
42 | T>S | No |
ClinGen 1000Genomes |
|
RCV000487592 rs367575427 CA1793584 |
43 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar 1000Genomes ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs1244016268 CA347830345 |
43 | S>T | No |
ClinGen gnomAD |
|
CA347830348 rs367575427 |
43 | S>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA347830355 rs1196497044 |
44 | S>L | No |
ClinGen gnomAD |
|
CA1793587 rs368755294 RCV001339032 |
46 | L>P | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs1232714887 CA347830368 |
47 | Q>* | No |
ClinGen TOPMed |
|
CA1793588 rs146318973 |
47 | Q>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs771343327 CA1793592 |
49 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
CA1793591 rs142681231 |
49 | G>W | No |
ClinGen ESP ExAC gnomAD |
|
CA1793593 rs777234482 |
50 | I>F | No |
ClinGen ExAC gnomAD |
|
rs770052346 RCV001317583 CA1793595 |
51 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
CA1793597 rs763335863 |
52 | M>T | No |
ClinGen ExAC gnomAD |
|
rs1293878574 CA347830421 |
56 | G>R | No |
ClinGen TOPMed gnomAD |
|
CA347830427 rs1216637665 |
57 | L>V | No |
ClinGen gnomAD |
|
CA347830432 rs1558811653 |
58 | A>T | No |
ClinGen Ensembl |
|
CA347830437 rs1574375743 |
58 | A>V | No |
ClinGen Ensembl |
|
rs1277340471 CA347830447 |
60 | S>P | No |
ClinGen gnomAD |
|
rs1253830785 CA347830453 |
61 | G>A | No |
ClinGen gnomAD |
|
CA1793602 rs202197432 CA1793601 |
61 | G>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA52620710 rs202197432 |
61 | G>W | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs1210938939 CA347830459 |
62 | Q>R | No |
ClinGen gnomAD |
|
rs756012830 CA347830466 |
63 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
CA1793605 rs756012830 |
63 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
CA1793604 rs750409034 |
63 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 63 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs765938043 CA1793606 |
64 | S>Y | No |
ClinGen ExAC gnomAD |
|
rs1357613392 CA347830487 |
67 | G>D | No |
ClinGen gnomAD |
|
CA52620711 rs147789073 |
67 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA1793608 rs147789073 |
67 | G>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA347830500 rs1313549731 |
69 | G>E | No |
ClinGen gnomAD |
|
CA52620712 rs980089967 |
69 | G>R | No |
ClinGen TOPMed gnomAD |
|
rs1044383960 CA52620713 |
70 | I>F | No |
ClinGen TOPMed |
|
rs200590680 CA1793610 |
70 | I>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA347830504 rs1044383960 |
70 | I>V | No |
ClinGen TOPMed |
|
CA1793613 rs746419947 |
71 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
rs759589628 | 73 | L>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
CA1793664 rs566717145 |
74 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
CA1793666 rs77733216 RCV001231271 |
75 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar 1000Genomes ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs371232570 CA1793667 |
75 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1194754352 CA347830913 |
76 | L>R | No |
ClinGen Ensembl |
|
rs575326068 CA1793672 |
80 | L>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs374507358 CA1793673 |
81 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
rs374507358 CA1793674 |
81 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA1793677 rs149230055 |
81 | R>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs374507358 CA1793675 |
81 | R>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA1793678 rs377322770 |
82 | R>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1268673326 CA347830948 |
83 | W>R | No |
ClinGen TOPMed |
|
CA1793680 rs781101783 |
84 | A>D | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1574378075 CA347830955 |
84 | A>T | No |
ClinGen Ensembl |
|
CA347830965 rs1473647403 |
85 | A>V | No |
ClinGen TOPMed gnomAD |
|
RCV001230682 rs774890755 |
87 | H>Q | No |
ClinVar dbSNP |
|
rs373871374 CA1793681 |
87 | H>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs775253368 CA1793683 |
89 | H>L | No |
ClinGen ExAC gnomAD |
|
rs775253368 CA1793684 |
89 | H>P | No |
ClinGen ExAC gnomAD |
|
CA1793682 rs769776135 |
89 | H>Y | No |
ClinGen ExAC gnomAD |
|
CA347831001 rs1354042829 |
91 | Q>* | No |
ClinGen gnomAD |
|
CA1793685 rs768331585 |
92 | D>H | No |
ClinGen ExAC |
|
TCGA novel | 94 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA347831031 rs114108462 |
95 | P>Q | Achromatopsia 2 (achm2) [Ensembl] | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
rs1558812920 CA347831029 |
95 | P>S | No |
ClinGen Ensembl |
|
RCV001312982 rs1411155736 |
99 | P>S | No |
ClinVar dbSNP |
|
COSM1024206 rs1411155736 CA347831055 |
99 | P>T | Variant assessed as Somatic; impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
rs761615922 CA1793687 COSM1690798 |
100 | D>E | skin [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
rs767017804 CA1793689 |
101 | R>C | No |
ClinGen ExAC TOPMed gnomAD |
|
rs767017804 CA1793688 RCV001206139 |
101 | R>G | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
RCV001348210 rs759775948 CA1793690 |
101 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
RCV001305778 CA1793691 rs370581927 |
103 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar 1000Genomes ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs549529161 CA52621269 |
103 | R>H | No |
ClinGen TOPMed gnomAD |
|
rs549529161 CA347831081 |
103 | R>L | No |
ClinGen TOPMed gnomAD |
|
CA347831083 rs1338257190 |
104 | G>R | No |
ClinGen TOPMed |
|
CA1793693 rs758869058 |
105 | A>T | No |
ClinGen ExAC gnomAD |
|
CA1793694 rs764229193 |
105 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
rs375152706 CA1793695 RCV001002960 |
106 | E>K | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs368478627 CA1793696 |
108 | K>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA1793697 rs781208142 |
109 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1574378160 CA347831124 |
110 | V>G | No |
ClinGen Ensembl |
|
CA1793699 rs755819041 |
111 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
rs745708829 CA1793698 |
111 | S>P | No |
ClinGen ExAC gnomAD |
|
CA1793700 rs779876718 |
112 | S>R | No |
ClinGen ExAC gnomAD |
|
rs749304299 CA1793701 |
113 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1293681017 CA347831151 |
114 | E>D | No |
ClinGen gnomAD |
|
rs145713281 CA1793702 |
115 | S>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1574378183 CA347831167 |
117 | A>T | No |
ClinGen Ensembl |
|
CA1793703 rs774008890 |
118 | Q>* | No |
ClinGen ExAC gnomAD |
|
CA1793705 rs771785153 |
118 | Q>H | No |
ClinGen ExAC TOPMed gnomAD |
|
rs772689125 CA1793706 |
119 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
CA1793707 VAR_071435 rs199859850 |
120 | N>D | No |
ClinGen UniProt 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA347831193 rs1484986676 |
121 | V>E | No |
ClinGen gnomAD |
|
CA347831225 rs1187776743 |
126 | P>T | No |
ClinGen gnomAD |
|
CA1793710 rs188196750 |
128 | D>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA347831245 rs1372689291 |
129 | R>* | No |
ClinGen gnomAD |
|
rs1350432054 CA347831247 |
129 | R>T | No |
ClinGen gnomAD |
|
COSM722746 CA1793711 rs763513739 |
130 | G>E | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
rs1174225295 | 132 | S>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
rs1428457344 CA347831284 |
133 | A>G | No |
ClinGen gnomAD |
|
rs769185929 CA52622218 |
133 | A>P | No |
ClinGen ExAC gnomAD |
|
CA1793730 rs769185929 |
133 | A>S | No |
ClinGen ExAC gnomAD |
|
rs769185929 CA1793731 |
133 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
CA347831295 rs1383594874 |
135 | P>T | No |
ClinGen gnomAD |
|
rs868136222 CA52622224 RCV001301806 |
137 | A>T | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
rs1250558836 CA347831310 |
137 | A>V | No |
ClinGen TOPMed |
|
CA1793735 rs760819593 |
140 | N>I | No |
ClinGen ExAC TOPMed gnomAD |
|
rs971679733 CA52622231 |
140 | N>K | No |
ClinGen TOPMed |
|
CA347831334 rs1214188127 |
141 | T>A | No |
ClinGen TOPMed gnomAD |
|
CA347831333 rs1214188127 |
141 | T>P | No |
ClinGen TOPMed gnomAD |
|
rs766641662 CA1793737 |
144 | S>N | No |
ClinGen ExAC gnomAD |
|
rs868247684 CA52622236 |
145 | N>K | No |
ClinGen Ensembl |
|
rs1396908411 CA347831385 |
148 | E>D | No |
ClinGen gnomAD |
|
CA1793743 rs752614219 |
148 | E>G | No |
ClinGen ExAC gnomAD |
|
rs1453929267 CA347831381 |
148 | E>K | No |
ClinGen gnomAD |
|
rs1398889034 CA347831388 |
149 | E>Q | No |
ClinGen gnomAD |
|
rs759796739 CA1793761 |
152 | K>E | No |
ClinGen ExAC gnomAD |
|
CA1793762 rs765188294 |
152 | K>R | No |
ClinGen ExAC gnomAD |
|
CA347831431 rs34314205 |
153 | T>K | Achromatopsia 2 (achm2) [Ensembl] | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
rs957791819 CA52624033 |
154 | K>E | No |
ClinGen TOPMed |
|
CA1793766 rs751066006 |
154 | K>I | No |
ClinGen ExAC gnomAD |
|
CA347831443 rs1368143471 |
155 | K>R | No |
ClinGen TOPMed |
|
rs1473389616 CA347831453 |
156 | K>N | No |
ClinGen Ensembl |
|
rs138934573 CA1793769 |
158 | A>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA1793772 rs201713771 |
160 | V>A | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
CA347831485 rs747447519 |
162 | D>A | No |
ClinGen ExAC gnomAD |
|
rs773719768 CA1793774 |
162 | D>H | No |
ClinGen ExAC gnomAD |
|
RCV001268706 rs910710420 |
164 | S>missing | No |
ClinVar dbSNP |
|
rs927179911 CA52624103 |
164 | S>F | No |
ClinGen TOPMed |
|
CA347831495 rs1574385325 |
164 | S>P | No |
ClinGen Ensembl |
|
CA347831509 rs1574385339 |
166 | N>T | No |
ClinGen Ensembl |
|
rs958618793 CA52624107 |
166 | N>Y | No |
ClinGen Ensembl |
|
CA347831515 rs1234249954 |
167 | L>V | No |
ClinGen TOPMed gnomAD |
|
rs1574385348 CA347831530 |
169 | Y>S | No |
ClinGen Ensembl |
|
RCV000179380 CA246626 rs200542032 |
170 | R>C | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA1793778 rs775155230 |
170 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
CA1793777 rs200542032 |
170 | R>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs149854714 CA52624119 |
172 | L>V | No |
ClinGen ESP TOPMed |
|
rs1574385372 CA347831550 |
173 | T>P | No |
ClinGen Ensembl |
|
rs919729482 CA52624128 |
174 | A>T | No |
ClinGen TOPMed gnomAD |
|
CA347831563 rs1182609021 |
175 | I>V | No |
ClinGen Ensembl |
|
rs1256677667 CA347831568 COSM1024207 |
176 | A>T | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
rs757155005 CA1793782 |
176 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
CA347831575 rs145830636 |
177 | L>P | No |
ClinGen ESP ExAC gnomAD |
|
CA1793783 rs145830636 |
177 | L>Q | No |
ClinGen ESP ExAC gnomAD |
|
rs370799365 CA1793784 |
178 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA347831586 rs1474882241 |
179 | V>A | No |
ClinGen gnomAD |
|
CA347831595 RCV001351193 rs1168098739 |
180 | F>L | No |
ClinGen ClinVar dbSNP gnomAD |
|
rs1064797258 RCV000487872 CA16621756 |
183 | W>* | No |
ClinGen ClinVar Ensembl dbSNP |
|
rs1432305934 CA347831619 |
183 | W>C | No |
ClinGen gnomAD |
|
rs543175270 | 188 | C>= | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 190 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs761554853 CA1793816 |
191 | C>S | Achromatopsia 2 (achm2) [Ensembl] | No |
ClinGen ExAC TOPMed gnomAD |
RCV000729241 rs375673700 CA1793818 |
193 | D>N | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs1325419198 CA347831713 |
196 | Q>* | No |
ClinGen gnomAD |
|
RCV001242251 CA1793822 rs200979604 |
199 | Y>H | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs968039620 CA52625219 |
200 | L>P | No |
ClinGen TOPMed |
|
CA1793824 rs374497578 |
201 | M>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA1793825 rs757650055 |
203 | W>C | No |
ClinGen ExAC gnomAD |
|
CA1793826 rs781676123 |
205 | V>G | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 206 | L>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA347831784 rs1249135528 |
207 | D>A | No |
ClinGen gnomAD |
|
CA347831785 rs1249135528 |
207 | D>G | No |
ClinGen gnomAD |
|
rs1469996093 CA347831790 |
208 | Y>H | No |
ClinGen TOPMed |
|
rs533596832 CA347831799 |
209 | S>* | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA1793828 rs533596832 RCV001034800 |
209 | S>L | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA1793831 rs553995770 |
211 | D>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs1414686226 CA347831809 |
211 | D>Y | No |
ClinGen gnomAD |
|
CA1793832 rs779055526 |
212 | V>G | No |
ClinGen ExAC gnomAD |
|
rs748346243 CA347831819 |
213 | L>M | No |
ClinGen ExAC TOPMed gnomAD |
|
CA347831828 rs1459563911 |
214 | Y>C | No |
ClinGen gnomAD |
|
TCGA novel | 219 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA1793835 rs772982333 |
220 | V>I | No |
ClinGen ExAC gnomAD |
|
rs772982333 CA1793836 |
220 | V>L | No |
ClinGen ExAC gnomAD |
|
CA1793837 RCV001236916 rs770713600 |
221 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs141395850 CA1793838 RCV001318416 |
221 | R>Q | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA347831876 rs1413936643 |
222 | A>G | No |
ClinGen gnomAD |
|
VAR_071439 | 224 | T>I | probable disease-associated variant found in patients with cone-rod dystrophy [UniProt] | No | UniProt |
RCV001317118 CA1793843 rs768061703 |
225 | G>S | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
TCGA novel | 229 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs769841049 CA1793877 |
229 | Q>R | No |
ClinGen ExAC gnomAD |
|
rs775153981 CA1793878 |
230 | G>D | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
CA347831947 CA52635177 rs1019772113 |
232 | M>I | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 233 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 235 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA1793880 rs768456172 |
239 | L>V | No |
ClinGen ExAC gnomAD |
|
RCV001247667 rs761494287 CA1793882 |
242 | H>D | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
rs1326906124 CA347832031 |
244 | K>R | No |
ClinGen TOPMed gnomAD |
|
CA1793883 rs143531659 COSM1165932 |
245 | T>M | lung large_intestine Variant assessed as Somatic; 4.62e-05 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
rs1027964844 CA52635191 |
246 | T>N | No |
ClinGen TOPMed |
|
TCGA novel | 249 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA347832082 rs1210775452 |
252 | D>G | No |
ClinGen gnomAD |
|
rs752802989 CA1793886 |
252 | D>H | No |
ClinGen ExAC |
|
CA52635206 rs990384317 |
255 | S>F | No |
ClinGen Ensembl |
|
VAR_071441 | 258 | P>R | probable disease-associated variant found in patients with cone-rod dystrophy [UniProt] | No | UniProt |
CA347832117 rs1477725731 |
258 | P>S | No |
ClinGen gnomAD |
|
rs1191742974 CA347832122 |
259 | T>A | No |
ClinGen gnomAD |
|
rs1417147005 CA347832132 |
260 | D>E | No |
ClinGen gnomAD |
|
rs374258471 CA1793892 COSM576584 |
260 | D>H | lung Variant assessed as Somatic; 0.0 impact. Achromatopsia 2 (achm2) [Cosmic, NCI-TCGA, Ensembl] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
rs750175156 CA1793893 |
262 | A>T | No |
ClinGen ExAC gnomAD |
|
rs1226035392 CA347832142 |
262 | A>V | No |
ClinGen TOPMed |
|
RCV000903400 CA1793894 rs73964088 |
264 | L>I | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs1574390443 CA347832153 |
264 | L>S | No |
ClinGen Ensembl |
|
CA347832169 rs1436565131 |
267 | G>S | No |
ClinGen gnomAD |
|
rs768321000 CA1793897 |
270 | Y>H | No |
ClinGen ExAC TOPMed gnomAD |
|
rs768321000 CA1793898 |
270 | Y>N | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 271 | P>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs149802213 CA1793900 |
271 | P>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
CA347832208 rs1222498341 |
273 | V>L | No |
ClinGen gnomAD |
|
rs148949600 CA1793903 |
275 | F>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs761958868 CA1793907 |
282 | S>P | No |
ClinGen ExAC gnomAD |
|
CA1793911 rs754926768 |
287 | F>Y | No |
ClinGen ExAC gnomAD |
|
rs367597798 CA247587 RCV000180214 |
290 | R>C | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs199837807 CA347832317 |
290 | R>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA347832334 rs1352219403 |
293 | T>K | No |
ClinGen gnomAD |
|
CA1793914 rs777433824 |
295 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
CA347832347 rs777433824 |
295 | T>N | No |
ClinGen ExAC TOPMed gnomAD |
|
CA347832358 rs746639657 |
297 | Y>D | No |
ClinGen ExAC TOPMed gnomAD |
|
CA1793915 rs746639657 |
297 | Y>H | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 297 | Y>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA347832369 rs1291730636 |
298 | P>L | No |
ClinGen gnomAD |
|
CA1793916 rs770185966 |
299 | N>I | No |
ClinGen ExAC gnomAD |
|
rs770185966 CA347832374 |
299 | N>S | No |
ClinGen ExAC gnomAD |
|
CA1793917 rs775829395 |
301 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
RCV001305507 rs141718590 CA1793919 |
303 | I>T | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA1793920 rs774303963 |
305 | N>K | No |
ClinGen ExAC gnomAD |
|
rs1574390612 CA347832415 |
305 | N>S | No |
ClinGen Ensembl |
|
RCV001343497 rs761915575 CA1793921 |
307 | V>I | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs1410520572 CA347832446 |
310 | I>V | No |
ClinGen gnomAD |
|
rs1290229054 CA347832454 |
311 | L>F | No |
ClinGen gnomAD |
|
rs1290229054 COSM1024208 CA347832452 |
311 | L>I | Variant assessed as Somatic; impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
rs1692906033 RCV001237067 |
311 | L>P | No |
ClinVar dbSNP |
|
rs1290229054 CA347832453 |
311 | L>V | No |
ClinGen gnomAD |
|
CA52635359 rs745785813 |
315 | H>L | No |
ClinGen Ensembl |
|
rs375921760 CA1793924 |
315 | H>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA52635355 rs866732997 |
315 | H>Y | No |
ClinGen Ensembl |
|
RCV001224965 rs1692906608 |
316 | W>G | No |
ClinVar dbSNP |
|
COSM1284180 rs766331925 CA1793926 |
318 | A>T | Variant assessed as Somatic; 0.0 impact. autonomic_ganglia [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
CA347832514 rs1227670242 |
320 | I>L | No |
ClinGen TOPMed gnomAD |
|
rs765181562 CA347832570 |
328 | I>L | No |
ClinGen ExAC gnomAD |
|
rs765181562 CA1793928 |
328 | I>V | No |
ClinGen ExAC gnomAD |
|
VAR_071445 | 330 | F>S | probable disease-associated variant found in patients with cone-rod dystrophy [UniProt] | No | UniProt |
CA347832592 rs1311451829 |
331 | G>E | No |
ClinGen gnomAD |
|
VAR_071446 rs1692907593 RCV001352075 |
334 | S>F | probable disease-associated variant found in patients with cone-rod dystrophy [UniProt] | No |
ClinVar dbSNP UniProt |
TCGA novel | 335 | W>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
VAR_069398 | 335 | W>C | No | UniProt | |
RCV001244004 rs753540191 |
336 | V>missing | No |
ClinVar dbSNP |
|
CA1793934 rs757084319 |
341 | S>F | No |
ClinGen ExAC |
|
rs560262335 CA1793935 |
343 | P>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs369281115 CA52635409 |
344 | E>* | No |
ClinGen ESP TOPMed gnomAD |
|
rs775262372 CA347832691 |
346 | G>R | No |
ClinGen TOPMed gnomAD |
|
CA52635415 rs775262372 |
346 | G>W | No |
ClinGen TOPMed gnomAD |
|
CA347832698 rs1211845337 |
347 | R>C | No |
ClinGen TOPMed gnomAD |
|
rs749591705 RCV001051906 CA1793937 COSM2914042 |
347 | R>H | pancreas [Cosmic] | No |
ClinGen cosmic curated ClinVar ExAC TOPMed dbSNP gnomAD |
TCGA novel | 353 | I>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs760524816 CA1793939 |
354 | Y>C | No |
ClinGen ExAC TOPMed gnomAD |
|
rs748583869 CA347832751 |
355 | S>C | No |
ClinGen ExAC gnomAD |
|
CA1793940 rs748583869 |
355 | S>G | No |
ClinGen ExAC gnomAD |
|
CA347832756 rs1277409725 |
355 | S>R | No |
ClinGen TOPMed |
|
TCGA novel | 356 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA1793941 rs772259302 |
358 | W>* | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1344704591 CA347832780 |
359 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
CA347832815 rs1415372391 |
364 | T>I | No |
ClinGen gnomAD |
|
rs868495714 CA52635423 |
365 | T>I | No |
ClinGen gnomAD |
|
CA1793942 rs773410146 |
366 | I>T | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 368 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs201372439 CA1793945 |
369 | T>N | No |
ClinGen ESP ExAC gnomAD |
|
CA1793947 rs764917021 |
371 | P>L | No |
ClinGen ExAC gnomAD |
|
rs759326131 CA1793946 |
371 | P>S | No |
ClinGen ExAC gnomAD |
|
rs958089715 RCV001092743 |
373 | V>missing | No |
ClinVar dbSNP |
|
CA52635475 rs960511387 |
375 | D>V | No |
ClinGen Ensembl |
|
rs943386838 CA52635460 |
375 | D>Y | No |
ClinGen TOPMed gnomAD |
|
CA52635485 rs866188873 |
379 | L>F | No |
ClinGen gnomAD |
|
CA347832924 rs991513881 |
382 | V>F | No |
ClinGen gnomAD |
|
CA52635486 rs991513881 |
382 | V>I | No |
ClinGen gnomAD |
|
rs377737921 CA1793954 |
383 | V>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA1793953 rs377737921 |
383 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
TCGA novel | 384 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA347832940 rs1204882299 |
385 | F>I | No |
ClinGen TOPMed |
|
rs1292576415 CA347832958 |
387 | V>A | No |
ClinGen TOPMed |
|
rs779119081 CA1793956 COSM722745 |
387 | V>M | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
CA1793957 rs748744512 |
389 | V>I | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 395 | I>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs374387223 CA1793958 |
395 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA347833018 rs1558820319 |
397 | G>V | No |
ClinGen Ensembl |
|
CA347833025 rs1322875233 |
398 | N>S | No |
ClinGen gnomAD |
|
rs773602359 CA52635514 |
400 | G>A | No |
ClinGen Ensembl |
|
CA347833036 rs1574390946 |
400 | G>R | No |
ClinGen Ensembl |
|
CA52635536 rs868852457 RCV001321527 |
402 | M>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinVar dbSNP ClinGen Ensembl NCI-TCGA |
CA1793961 rs368567533 |
402 | M>L | No |
ClinGen ESP ExAC gnomAD |
|
CA1793963 rs759643615 |
402 | M>T | No |
ClinGen ExAC gnomAD |
|
CA1793962 rs368567533 |
402 | M>V | No |
ClinGen ESP ExAC gnomAD |
|
CA347833058 rs1269596010 |
404 | S>T | No |
ClinGen gnomAD |
|
rs1289044362 CA347833088 |
408 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
RCV001201833 rs1692913716 |
408 | A>V | No |
ClinVar dbSNP |
|
CA1793969 rs373666055 |
410 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs373666055 RCV001237950 CA1793968 |
410 | R>Q | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs1201579344 CA347833103 |
411 | A>T | No |
ClinGen gnomAD |
|
CA347833108 rs1441141382 |
412 | E>K | No |
ClinGen TOPMed |
|
CA347833124 rs1250121138 |
414 | Q>E | No |
ClinGen gnomAD |
|
CA347833134 rs1472451101 |
415 | A>T | No |
ClinGen gnomAD |
|
CA52635564 rs764756410 |
416 | K>E | No |
ClinGen Ensembl |
|
CA1793970 rs750132405 |
417 | I>T | No |
ClinGen ExAC TOPMed gnomAD |
|
CA347833156 rs1456528912 |
418 | D>V | No |
ClinGen gnomAD |
|
CA1793972 rs371558158 |
419 | S>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs749949335 CA52635577 |
419 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
rs1368838041 CA347833183 |
422 | Q>L | No |
ClinGen gnomAD |
|
CA347833195 CA1793973 rs752934884 |
424 | M>L | No |
ClinGen ExAC gnomAD |
|
rs571419754 CA1793975 |
425 | Q>* | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs571419754 CA1793974 |
425 | Q>E | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA1793977 rs771172885 |
427 | R>H | Variant assessed as Somatic; 0.0 impact. Achromatopsia 2 (achm2) [NCI-TCGA, Ensembl] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs746160928 CA1793979 |
428 | K>E | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 428 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1357820945 CA347833250 |
432 | D>G | No |
ClinGen gnomAD |
|
rs762697129 CA1793982 |
434 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
COSM1024211 rs758131725 CA1793983 |
435 | T>M | endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
rs760376435 CA1793987 |
439 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA347833295 rs1459484455 |
440 | W>* | No |
ClinGen TOPMed gnomAD |
|
CA347833296 rs1459484455 |
440 | W>S | No |
ClinGen TOPMed gnomAD |
|
CA347833303 rs1272011440 |
441 | F>L | No |
ClinGen TOPMed gnomAD |
|
RCV001229585 rs1692918521 |
442 | D>F | No |
ClinVar dbSNP |
|
CA347833314 rs1369864738 |
442 | D>V | No |
ClinGen gnomAD |
|
CA347833311 rs1166718009 |
442 | D>Y | No |
ClinGen gnomAD |
|
CA347833320 rs1309652906 |
443 | Y>C | No |
ClinGen gnomAD |
|
RCV001214874 rs1692918950 |
445 | W>* | No |
ClinVar dbSNP |
|
rs753123724 CA1793989 |
445 | W>R | No |
ClinGen ExAC gnomAD |
|
rs369459783 CA52635658 |
446 | A>T | No |
ClinGen ESP TOPMed gnomAD |
|
CA347833343 rs1387591722 |
447 | N>H | No |
ClinGen TOPMed |
|
rs1558820514 CA347833350 |
447 | N>K | No |
ClinGen Ensembl |
|
rs190014426 CA347833354 |
448 | K>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs536496690 RCV001203580 CA1793992 |
450 | T>M | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
rs1558820535 RCV001326504 CA347833374 |
451 | V>E | No |
ClinGen ClinVar Ensembl dbSNP |
|
rs1421984583 CA347833371 |
451 | V>M | No |
ClinGen Ensembl |
|
rs1253473406 CA347833380 |
452 | D>G | No |
ClinGen gnomAD |
|
rs781348502 CA1793994 |
452 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
CA347833404 rs1482468950 |
455 | E>G | No |
ClinGen TOPMed gnomAD |
|
CA347833401 rs1574391242 |
455 | E>Q | No |
ClinGen Ensembl |
|
rs1482468950 CA347833405 |
455 | E>V | No |
ClinGen TOPMed gnomAD |
|
rs1010663867 CA52635681 |
456 | V>G | No |
ClinGen Ensembl |
|
CA1793995 rs745869844 |
456 | V>M | No |
ClinGen ExAC gnomAD |
|
rs756391784 CA1793996 |
458 | K>T | No |
ClinGen ExAC gnomAD |
|
CA1793997 rs780094581 |
460 | L>F | No |
ClinGen ExAC gnomAD |
|
CA347833443 rs1389564330 |
461 | P>L | No |
ClinGen gnomAD |
|
CA347833447 rs1157784379 |
462 | D>A | No |
ClinGen TOPMed |
|
TCGA novel | 463 | K>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA347833479 rs1170387198 |
467 | E>K | No |
ClinGen gnomAD |
|
rs553056613 CA1793999 |
468 | I>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA347833494 rs117522010 |
469 | A>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
rs1432354394 CA347833506 |
471 | N>D | No |
ClinGen gnomAD |
|
CA52635708 rs373954146 |
471 | N>I | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
COSM343008 rs772806640 CA1794003 |
472 | V>M | lung [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
rs760052020 CA1794004 |
473 | H>N | No |
ClinGen ExAC gnomAD |
|
rs1310881032 CA347833520 |
473 | H>P | No |
ClinGen gnomAD |
|
rs765889600 CA1794005 |
474 | L>M | No |
ClinGen ExAC gnomAD |
|
CA347833525 rs1256900530 |
474 | L>P | No |
ClinGen gnomAD |
|
rs776186575 CA1794006 |
475 | D>G | No |
ClinGen ExAC |
|
rs376034278 CA1794007 RCV001059217 |
476 | T>M | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs1247542945 CA347833539 |
477 | L>V | No |
ClinGen gnomAD |
|
rs751916521 CA1794009 |
481 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
CA1794010 rs201877346 |
481 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
COSM1024213 rs201877346 CA1794011 |
481 | R>L | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
rs751916521 CA347833566 |
481 | R>S | No |
ClinGen ExAC TOPMed gnomAD |
|
CA1794013 rs750539864 |
482 | I>V | No |
ClinGen ExAC gnomAD |
|
rs1437228763 CA347833587 |
484 | Q>R | No |
ClinGen TOPMed |
|
CA1794015 rs181229773 |
485 | D>E | No |
ClinGen 1000Genomes ExAC |
|
CA1794014 rs756200433 |
485 | D>Y | No |
ClinGen ExAC gnomAD |
|
rs1379110696 CA347833600 |
486 | C>* | No |
ClinGen gnomAD |
|
rs749581280 CA1794016 |
486 | C>G | No |
ClinGen ExAC gnomAD |
|
rs786205531 CA52635753 |
486 | C>S | No |
ClinGen Ensembl |
|
rs786205531 RCV000171301 CA236063 |
486 | C>Y | No |
ClinGen ClinVar Ensembl dbSNP |
|
CA52635771 rs1013072215 |
488 | A>S | No |
ClinGen TOPMed gnomAD |
|
COSM722743 CA52635756 rs1013072215 |
488 | A>T | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
rs1692923847 RCV001322739 |
490 | L>M | No |
ClinVar dbSNP |
|
CA347833624 rs1287769521 |
490 | L>R | No |
ClinGen TOPMed |
|
rs1436640566 CA347833642 |
493 | E>D | No |
ClinGen gnomAD |
|
rs755182887 CA1794017 |
493 | E>K | No |
ClinGen ExAC gnomAD |
|
RCV001201467 CA347833648 rs778681224 |
495 | V>L | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
CA1794018 rs778681224 |
495 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
rs747895951 CA52635788 |
496 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
CA347833671 rs1386641968 |
499 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
rs374938560 CA52635800 |
499 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
CA1794020 rs374938560 |
499 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
CA347833673 rs1448184686 |
500 | P>T | No |
ClinGen TOPMed |
|
CA347833680 rs1326071763 |
501 | T>A | No |
ClinGen gnomAD |
|
RCV000521812 rs1326071763 CA347833679 |
501 | T>P | No |
ClinGen ClinVar dbSNP gnomAD |
|
TCGA novel | 502 | V>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs201193127 CA1794021 |
503 | F>Y | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs1261714176 CA347833699 |
504 | S>G | No |
ClinGen TOPMed |
|
CA347833717 rs1267734152 |
506 | G>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
rs778000601 CA1794024 |
507 | D>V | No |
ClinGen ExAC TOPMed gnomAD |
|
CA1794027 rs759274452 |
508 | Y>F | No |
ClinGen ExAC gnomAD |
|
CA1794026 rs200657069 |
508 | Y>H | No |
ClinGen 1000Genomes ExAC |
|
rs1692925549 RCV001348872 |
509 | I>V | No |
ClinVar dbSNP |
|
CA52635815 rs908111816 |
510 | C>Y | No |
ClinGen TOPMed gnomAD |
|
CA347833744 rs1294954096 |
511 | K>Q | No |
ClinGen TOPMed gnomAD |
|
rs774888059 CA1794029 |
513 | G>A | No |
ClinGen ExAC gnomAD |
|
rs764918448 CA1794028 |
513 | G>R | No |
ClinGen ExAC gnomAD |
|
CA1794031 rs767904913 |
514 | D>V | No |
ClinGen ExAC |
|
CA347833775 rs1210466505 |
515 | I>S | No |
ClinGen TOPMed |
|
rs750937457 CA1794032 |
515 | I>V | No |
ClinGen ExAC gnomAD |
|
rs942251497 CA52635830 |
516 | G>A | No |
ClinGen TOPMed |
|
CA1794033 rs756642088 |
516 | G>W | No |
ClinGen ExAC gnomAD |
|
CA52635844 rs769685214 |
522 | I>L | No |
ClinGen Ensembl |
|
rs1457883539 CA347833827 |
523 | N>D | No |
ClinGen gnomAD |
|
rs112736405 CA1794039 |
524 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
rs112736405 CA52635852 |
524 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
RCV000171302 rs786205532 CA236065 |
525 | G>S | No |
ClinGen ClinVar Ensembl dbSNP |
|
CA1794040 rs777620322 |
526 | K>M | No |
ClinGen ExAC TOPMed |
|
CA1794041 rs143151855 COSM243744 |
526 | K>N | prostate [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
CA1794043 rs779023431 |
527 | L>R | No |
ClinGen ExAC gnomAD |
|
COSM1410192 rs999564715 CA52635874 |
529 | V>A | large_intestine [Cosmic] | No |
ClinGen cosmic curated TOPMed |
rs1321175890 CA347833875 |
531 | A>G | No |
ClinGen gnomAD |
|
CA347833882 RCV000728332 rs1558820799 |
532 | D>V | No |
ClinGen ClinVar Ensembl dbSNP |
|
rs775332304 CA1794045 |
533 | D>N | No |
ClinGen ExAC gnomAD |
|
CA1794047 rs772389089 |
533 | D>V | No |
ClinGen ExAC |
|
CA347833906 rs1481984288 |
536 | T>S | No |
ClinGen gnomAD |
|
CA347833922 rs762984332 |
538 | F>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs146200757 CA1794050 |
539 | V>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
TCGA novel | 539 | V>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA1794049 rs374275399 |
539 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs946421808 CA52635912 |
542 | S>G | No |
ClinGen Ensembl |
|
rs1405438176 CA347833943 |
542 | S>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
CA52635917 rs777441841 |
543 | D>E | No |
ClinGen ExAC gnomAD |
|
RCV000906074 CA1794055 rs150759499 |
543 | D>N | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA347833961 rs1307841744 |
545 | S>N | No |
ClinGen TOPMed gnomAD |
|
CA347833987 rs1282613813 |
549 | E>* | No |
ClinGen gnomAD |
|
rs1245466170 CA347834001 |
551 | S>G | No |
ClinGen TOPMed |
|
CA347834010 rs1558820883 |
552 | I>V | No |
ClinGen Ensembl |
|
CA1794059 rs745779023 |
553 | L>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA1794060 rs769473325 |
554 | N>S | No |
ClinGen ExAC gnomAD |
|
rs779710464 CA347834027 |
555 | I>F | No |
ClinGen ExAC TOPMed gnomAD |
|
rs147873778 CA347834030 |
555 | I>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs147873778 CA1794062 |
555 | I>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA1794061 rs779710464 RCV001344789 |
555 | I>V | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs768299496 CA1794063 |
556 | K>R | No |
ClinGen ExAC gnomAD |
|
rs1309482690 CA347834048 |
558 | S>T | No |
ClinGen TOPMed |
|
CA347834054 rs1408329849 |
559 | K>* | No |
ClinGen TOPMed |
|
rs1164147578 CA347834057 |
559 | K>T | No |
ClinGen gnomAD |
|
rs1396258737 CA347834061 |
560 | S>P | No |
ClinGen TOPMed |
|
rs765358532 CA1794069 |
564 | R>S | No |
ClinGen ExAC gnomAD |
|
rs751335543 CA1794072 |
566 | A>S | No |
ClinGen ExAC gnomAD |
|
CA347834103 rs1249516201 |
567 | N>S | No |
ClinGen TOPMed |
|
rs201782746 CA52635975 |
569 | R>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
VAR_071450 | 570 | S>N | probable disease-associated variant found in patients with cone-rod dystrophy [UniProt] | No | UniProt |
rs1273110149 CA347834129 |
571 | I>M | No |
ClinGen gnomAD |
|
CA1794075 rs750456621 |
571 | I>N | No |
ClinGen ExAC TOPMed gnomAD |
|
RCV000265433 rs750456621 CA1794076 |
571 | I>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs1330420689 CA347834136 |
573 | Y>H | No |
ClinGen gnomAD |
|
TCGA novel | 574 | S>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA1794078 rs148867596 |
575 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1553450895 RCV000523487 |
581 | K>missing | No |
ClinVar dbSNP |
|
TCGA novel | 581 | K>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA347834202 rs1363062888 |
582 | D>G | No |
ClinGen TOPMed gnomAD |
|
rs768458537 CA347834206 |
583 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
rs768458537 CA52635990 |
583 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
rs768458537 CA1794081 |
583 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
rs776965941 CA1794083 |
585 | M>V | No |
ClinGen ExAC gnomAD |
|
CA1794084 rs746385965 |
587 | A>T | No |
ClinGen ExAC gnomAD |
|
CA347834238 rs1442673371 |
587 | A>V | No |
ClinGen gnomAD |
|
rs1325838790 CA347834243 |
588 | L>P | No |
ClinGen TOPMed |
|
CA1794085 rs770218685 |
589 | T>I | No |
ClinGen ExAC gnomAD |
|
rs1414317435 CA347834267 |
592 | P>A | No |
ClinGen TOPMed |
|
RCV001321781 CA52636014 rs867965684 |
595 | K>E | No |
ClinGen ClinVar dbSNP gnomAD |
|
CA52636022 rs1011255917 |
597 | A>D | No |
ClinGen TOPMed |
|
rs567567852 CA52636019 RCV001228133 |
597 | A>T | No |
ClinGen ClinVar 1000Genomes dbSNP |
|
CA347834311 rs1434442344 |
599 | E>G | No |
ClinGen gnomAD |
|
rs376992789 CA1794091 |
599 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
RCV001324659 rs372215423 |
603 | R>P | No |
ClinVar dbSNP |
|
CA1794094 rs372215423 COSM3695655 |
603 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC NCI-TCGA TOPMed gnomAD |
CA1794095 RCV000513020 rs753692812 |
604 | Q>* | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
RCV001236032 rs1692935801 |
605 | I>missing | No |
ClinVar dbSNP |
|
CA347834352 rs1412692820 |
605 | I>N | No |
ClinGen gnomAD |
|
rs754554042 CA1794096 |
606 | L>M | No |
ClinGen ExAC gnomAD |
|
rs923718967 CA52636043 |
611 | L>P | No |
ClinGen Ensembl |
|
CA52636052 rs868062344 |
613 | D>V | No |
ClinGen Ensembl |
|
CA347834408 rs1369267677 |
614 | E>K | No |
ClinGen TOPMed |
|
rs1197317802 CA347834423 |
616 | L>M | No |
ClinGen gnomAD |
|
rs939123168 CA52636060 |
618 | R>W | No |
ClinGen Ensembl |
|
RCV001043939 CA1794102 rs770308610 COSM243745 |
619 | A>V | lung upper_aerodigestive_tract Variant assessed as Somatic; 0.0 impact. central_nervous_system prostate [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs200819699 RCV001316225 CA347834454 |
621 | A>E | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
COSM199144 CA1794107 rs200819699 RCV001053653 |
621 | A>V | Variant assessed as Somatic; 0.0 impact. oesophagus large_intestine breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ClinVar 1000Genomes ExAC NCI-TCGA TOPMed dbSNP gnomAD |
CA52636073 rs868478353 |
622 | D>N | No |
ClinGen gnomAD |
|
rs773176537 CA1794110 |
624 | K>M | No |
ClinGen ExAC TOPMed gnomAD |
|
CA347834472 rs1406531016 |
624 | K>N | No |
ClinGen gnomAD |
|
CA1794109 rs773176537 |
624 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs766053241 CA1794111 |
625 | D>N | No |
ClinGen ExAC gnomAD |
|
rs1349500958 CA347834500 |
628 | E>V | No |
ClinGen gnomAD |
|
rs766000572 CA52636086 |
630 | V>M | No |
ClinGen Ensembl |
|
CA1794113 rs759375641 |
634 | G>R | No |
ClinGen ExAC |
|
rs1249885011 CA347834547 |
635 | S>F | No |
ClinGen TOPMed |
|
CA1794114 rs764815361 |
636 | S>F | No |
ClinGen ExAC gnomAD |
|
rs370004436 CA1794115 |
637 | L>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1490638619 CA347834590 |
643 | R>G | No |
ClinGen gnomAD |
|
rs374387162 CA347834596 |
643 | R>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA347834606 rs1574392158 |
645 | A>S | No |
ClinGen Ensembl |
|
rs1574392164 CA347834609 |
645 | A>V | No |
ClinGen Ensembl |
|
VAR_071451 rs141577844 CA1794119 |
646 | R>H | No |
ClinGen UniProt ESP ExAC TOPMed dbSNP gnomAD |
|
CA52636109 rs761112764 |
647 | L>F | No |
ClinGen TOPMed |
|
CA1794122 rs749868323 |
652 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1350430003 CA347834655 |
653 | A>G | No |
ClinGen gnomAD |
|
rs982245764 CA52636115 |
653 | A>T | No |
ClinGen TOPMed gnomAD |
|
CA1794123 rs779058494 |
655 | Q>E | No |
ClinGen ExAC gnomAD |
|
rs1391667081 CA347834682 |
657 | K>R | No |
ClinGen gnomAD |
|
RCV001048866 rs1692940860 |
658 | M>I | No |
ClinVar dbSNP |
|
rs568826347 CA1794125 |
658 | M>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs1553450979 CA347834703 RCV000591237 |
660 | Q>* | No |
ClinGen ClinVar Ensembl dbSNP |
|
rs760971757 CA1794127 |
660 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
RCV001055561 CA1794129 rs183838250 |
661 | R>C | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA347834735 rs1421500474 |
665 | L>Q | No |
ClinGen TOPMed |
|
rs1225301434 CA347834740 |
666 | E>K | No |
ClinGen gnomAD |
|
CA347834747 rs1210322102 |
667 | S>C | No |
ClinGen TOPMed gnomAD |
|
rs374834480 CA52636129 |
667 | S>R | No |
ClinGen ESP TOPMed gnomAD |
|
CA347834765 rs1196670430 |
669 | V>G | No |
ClinGen gnomAD |
|
CA1794132 rs752224900 |
670 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 671 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1440851738 CA347834779 |
672 | G>S | No |
ClinGen gnomAD |
|
rs1484475832 CA347834784 |
672 | G>V | No |
ClinGen TOPMed |
|
rs574803463 CA1794133 |
673 | G>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs1166619405 CA347834810 |
676 | P>L | No |
ClinGen gnomAD |
|
CA1794135 RCV001239559 rs751281453 |
676 | P>S | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
TCGA novel | 678 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA347834822 rs1574392336 |
679 | D>N | No |
ClinGen Ensembl |
|
CA1794136 rs756847787 |
679 | D>V | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 680 | G>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA347834837 rs1395048061 |
681 | E>A | No |
ClinGen gnomAD |
|
CA52636147 rs978294893 |
681 | E>D | No |
ClinGen Ensembl |
|
CA1794137 rs780484436 |
681 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1692943291 RCV001300186 |
682 | V>F | No |
ClinVar dbSNP |
|
RCV001294773 CA1794139 rs755545093 |
684 | G>E | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
rs748631419 CA1794141 |
685 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1357724875 CA347834857 |
685 | D>N | No |
ClinGen TOPMed |
|
CA52636159 RCV001235110 rs998041981 |
687 | T>A | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
rs772341630 CA1794142 |
687 | T>I | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 689 | T>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1228632947 CA347834892 |
690 | E>G | No |
ClinGen gnomAD |
|
CA52636167 rs916233309 |
692 | K>Q | No |
ClinGen gnomAD |
|
rs757901022 RCV001301027 |
694 | Q>missing | No |
ClinVar dbSNP |
|
rs947764588 RCV001235776 CA52636175 |
694 | Q>R | No |
ClinGen ClinVar TOPMed dbSNP gnomAD |
|
rs534095098 CA52636179 |
695 | Q>C | No |
ClinGen 1000Genomes |
|
rs1005395745 CA52636177 |
695 | Q>G | No |
ClinGen TOPMed |
1 associated diseases with Q16281
[MIM: 216900]: Achromatopsia 2 (ACHM2)
An autosomal recessive, ocular stationary disorder due to the absence of functioning cone photoreceptors in the retina. It is characterized by total colorblindness, low visual acuity, photophobia and nystagmus. {ECO:0000269|PubMed:11536077, ECO:0000269|PubMed:14757870, ECO:0000269|PubMed:15712225, ECO:0000269|PubMed:15743887, ECO:0000269|PubMed:18521937, ECO:0000269|PubMed:24903488, ECO:0000269|PubMed:26493561, ECO:0000269|PubMed:9662398}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- An autosomal recessive, ocular stationary disorder due to the absence of functioning cone photoreceptors in the retina. It is characterized by total colorblindness, low visual acuity, photophobia and nystagmus. {ECO:0000269|PubMed:11536077, ECO:0000269|PubMed:14757870, ECO:0000269|PubMed:15712225, ECO:0000269|PubMed:15743887, ECO:0000269|PubMed:18521937, ECO:0000269|PubMed:24903488, ECO:0000269|PubMed:26493561, ECO:0000269|PubMed:9662398}. Note=The disease is caused by variants affecting the gene represented in this entry.
5 regional properties for Q16281
Type | Name | Position | InterPro Accession |
---|---|---|---|
domain | Cyclic nucleotide-binding domain | 482 - 606 | IPR000595 |
domain | Ion transport domain | 171 - 409 | IPR005821 |
conserved_site | Cyclic nucleotide-binding, conserved site | 509 - 525 | IPR018488-1 |
conserved_site | Cyclic nucleotide-binding, conserved site | 547 - 570 | IPR018488-2 |
domain | Cyclic nucleotide-gated channel, C-terminal leucine zipper domain | 598 - 668 | IPR032406 |
8 GO annotations of cellular component
Name | Definition |
---|---|
axon initial segment | Portion of the axon proximal to the neuronal cell body, at the level of the axon hillock. The action potentials that propagate along the axon are generated at the level of this initial segment. |
cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
dendrite | A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body. |
glial cell projection | A prolongation or process extending from a glial cell. |
intracellular cyclic nucleotide activated cation channel complex | A protein complex that forms a transmembrane channel through which cations ions may pass in response to an intracellular cyclic nucleotide binding to the channel complex or one of its constituent parts. |
perikaryon | The portion of the cell soma (neuronal cell body) that excludes the nucleus. |
plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
transmembrane transporter complex | A transmembrane protein complex which enables the transfer of a substance from one side of a membrane to the other. |
6 GO annotations of molecular function
Name | Definition |
---|---|
cGMP binding | Binding to cGMP, the nucleotide cyclic GMP (guanosine 3',5'-cyclophosphate). |
intracellular cAMP-activated cation channel activity | Enables the transmembrane transfer of a cation by a channel that opens when intracellular cAMP has been bound by the channel complex or one of its constituent parts. |
intracellular cGMP-activated cation channel activity | Enables the transmembrane transfer of a cation by a channel that opens when intracellular cGMP has been bound by the channel complex or one of its constituent parts. |
ligand-gated ion channel activity | Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. |
protein C-terminus binding | Binding to a protein C-terminus, the end of a peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue. |
protein-containing complex binding | Binding to a macromolecular complex. |
8 GO annotations of biological process
Name | Definition |
---|---|
cation transmembrane transport | The process in which a cation is transported across a membrane. |
cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
inorganic cation import across plasma membrane | The directed movement of inorganic cations from outside of a cell, across the plasma membrane and into the cytosol. |
response to cAMP | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus. |
response to corticosteroid | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a corticosteroid hormone stimulus. A corticosteroid is a steroid hormone that is produced in the adrenal cortex. Corticosteroids are involved in a wide range of physiologic systems such as stress response, immune response and regulation of inflammation, carbohydrate metabolism, protein catabolism, blood electrolyte levels, and behavior. They include glucocorticoids and mineralocorticoids. |
response to magnesium ion | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a magnesium ion stimulus. |
signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
visual perception | The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image. |
15 homologous proteins in AiPD
UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
---|---|---|---|---|
Q03041 | CNGA2 | Cyclic nucleotide-gated olfactory channel | Bos taurus (Bovine) | PR |
Q00194 | CNGA1 | cGMP-gated cation channel alpha-1 | Bos taurus (Bovine) | PR |
Q29441 | CNGA3 | Cyclic nucleotide-gated cation channel alpha-3 | Bos taurus (Bovine) | PR |
Q90980 | Cyclic nucleotide-gated channel rod photoreceptor subunit alpha | Gallus gallus (Chicken) | PR | |
Q90805 | Cyclic nucleotide-gated channel cone photoreceptor subunit alpha | Gallus gallus (Chicken) | PR | |
P29973 | CNGA1 | cGMP-gated cation channel alpha-1 | Homo sapiens (Human) | PR |
Q16280 | CNGA2 | Cyclic nucleotide-gated olfactory channel | Homo sapiens (Human) | PR |
P29974 | Cnga1 | cGMP-gated cation channel alpha-1 | Mus musculus (Mouse) | PR |
Q62398 | Cnga2 | Cyclic nucleotide-gated olfactory channel | Mus musculus (Mouse) | PR |
Q9JJZ8 | Cnga3 | Cyclic nucleotide-gated cation channel alpha-3 | Mus musculus (Mouse) | PR |
Q62927 | Cnga1 | cGMP-gated cation channel alpha-1 | Rattus norvegicus (Rat) | PR |
Q00195 | Cnga2 | Cyclic nucleotide-gated olfactory channel | Rattus norvegicus (Rat) | PR |
Q9SKD7 | CNGC3 | Probable cyclic nucleotide-gated ion channel 3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q9SU64 | CNGC16 | Probable cyclic nucleotide-gated ion channel 16 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q9LDR2 | CNGC19 | Putative cyclic nucleotide-gated ion channel 19 | Arabidopsis thaliana (Mouse-ear cress) | PR |
10 | 20 | 30 | 40 | 50 | 60 |
MAKINTQYSH | PSRTHLKVKT | SDRDLNRAEN | GLSRAHSSSE | ETSSVLQPGI | AMETRGLADS |
70 | 80 | 90 | 100 | 110 | 120 |
GQGSFTGQGI | ARLSRLIFLL | RRWAARHVHH | QDQGPDSFPD | RFRGAELKEV | SSQESNAQAN |
130 | 140 | 150 | 160 | 170 | 180 |
VGSQEPADRG | RSAWPLAKCN | TNTSNNTEEE | KKTKKKDAIV | VDPSSNLYYR | WLTAIALPVF |
190 | 200 | 210 | 220 | 230 | 240 |
YNWYLLICRA | CFDELQSEYL | MLWLVLDYSA | DVLYVLDVLV | RARTGFLEQG | LMVSDTNRLW |
250 | 260 | 270 | 280 | 290 | 300 |
QHYKTTTQFK | LDVLSLVPTD | LAYLKVGTNY | PEVRFNRLLK | FSRLFEFFDR | TETRTNYPNM |
310 | 320 | 330 | 340 | 350 | 360 |
FRIGNLVLYI | LIIIHWNACI | YFAISKFIGF | GTDSWVYPNI | SIPEHGRLSR | KYIYSLYWST |
370 | 380 | 390 | 400 | 410 | 420 |
LTLTTIGETP | PPVKDEEYLF | VVVDFLVGVL | IFATIVGNVG | SMISNMNASR | AEFQAKIDSI |
430 | 440 | 450 | 460 | 470 | 480 |
KQYMQFRKVT | KDLETRVIRW | FDYLWANKKT | VDEKEVLKSL | PDKLKAEIAI | NVHLDTLKKV |
490 | 500 | 510 | 520 | 530 | 540 |
RIFQDCEAGL | LVELVLKLRP | TVFSPGDYIC | KKGDIGKEMY | IINEGKLAVV | ADDGVTQFVV |
550 | 560 | 570 | 580 | 590 | 600 |
LSDGSYFGEI | SILNIKGSKS | GNRRTANIRS | IGYSDLFCLS | KDDLMEALTE | YPEAKKALEE |
610 | 620 | 630 | 640 | 650 | 660 |
KGRQILMKDN | LIDEELARAG | ADPKDLEEKV | EQLGSSLDTL | QTRFARLLAE | YNATQMKMKQ |
670 | 680 | 690 | |||
RLSQLESQVK | GGGDKPLADG | EVPGDATKTE | DKQQ |