P76318
Gene name |
yedK |
Protein name |
Abasic site processing protein YedK |
Names |
|
Species |
Escherichia coli (strain K12) |
KEGG Pathway |
eco:b1931 |
EC number |
|
Protein Class |
|
Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure
Activated structure
11 structures for P76318
| Entry ID | Method | Resolution | Chain | Position | Source |
|---|---|---|---|---|---|
| 2ICU | X-ray | 160 A | A/B | 1-222 | PDB |
| 6KBS | X-ray | 160 A | B | 2-222 | PDB |
| 6KBU | X-ray | 210 A | A/B | 2-222 | PDB |
| 6KBX | X-ray | 122 A | B | 2-222 | PDB |
| 6KBZ | X-ray | 165 A | B/D/F/H | 2-222 | PDB |
| 6KCQ | X-ray | 170 A | B | 1-222 | PDB |
| 6KIJ | X-ray | 158 A | B | 2-222 | PDB |
| 6NUA | X-ray | 164 A | A/B | 2-222 | PDB |
| 6NUH | X-ray | 159 A | A | 2-222 | PDB |
| 8D2M | X-ray | 182 A | A/B | 2-222 | PDB |
| AF-P76318-F1 | Predicted | AlphaFoldDB |
No variants for P76318
| Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
|---|---|---|---|---|---|
| No variants for P76318 | |||||
No associated diseases with P76318
No regional properties for P76318
| Type | Name | Position | InterPro Accession |
|---|---|---|---|
| No domain, repeats, and functional sites for P76318 | |||
No GO annotations of cellular component
| Name | Definition |
|---|---|
| No GO annotations for cellular component |
2 GO annotations of molecular function
| Name | Definition |
|---|---|
| peptidase activity | Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. |
| single-stranded DNA binding | Binding to single-stranded DNA. |
4 GO annotations of biological process
| Name | Definition |
|---|---|
| cellular response to DNA damage stimulus | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. |
| protein-DNA covalent cross-linking | The formation of a covalent cross-link between DNA and a protein. |
| proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
| SOS response | An error-prone process for repairing damaged microbial DNA. |
1 homologous proteins in AiPD
| UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
|---|---|---|---|---|
| Q04471 | YMR114C | Abasic site processing protein YMR114C | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | PR |
| 10 | 20 | 30 | 40 | 50 | 60 |
| MCGRFAQSQT | REDYLALLAE | DIERDIPYDP | EPIGRYNVAP | GTKVLLLSER | DEHLHLDPVF |
| 70 | 80 | 90 | 100 | 110 | 120 |
| WGYAPGWWDK | PPLINARVET | AATSRMFKPL | WQHGRAICFA | DGWFEWKKEG | DKKQPFFIYR |
| 130 | 140 | 150 | 160 | 170 | 180 |
| ADGQPIFMAA | IGSTPFERGD | EAEGFLIVTA | AADQGLVDIH | DRRPLVLSPE | AAREWMRQEI |
| 190 | 200 | 210 | 220 | ||
| SGKEASEIAA | SGCVPANQFS | WHPVSRAVGN | VKNQGAELIQ | PV |