P28916

PR
Gene name
ybfD (b0706, JW0696)
Protein name
H repeat-associated putative transposase YbfD
Names
ORF-H3
Species
Escherichia coli (strain K12)
KEGG Pathway
eco:b0706
EC number
Protein Class

Descriptions

The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.

Autoinhibitory domains (AIDs)

183-253 (Predicted disordered autoinhibitory region) PR

Target domain

Relief mechanism

Assay

cis-regPred

Accessory elements

No accessory elements

References

Autoinhibited structure

Activated structure

1 structures for P28916

Entry ID Method Resolution Chain Position Source
AF-P28916-F1 Predicted AlphaFoldDB

No variants for P28916

Variant ID(s) Position Change Description Diseaes Association Provenance
No variants for P28916

No associated diseases with P28916

2 regional properties for P28916

Type Name Position InterPro Accession
domain Transposase IS4-like domain 102 - 232 IPR002559
domain H repeat-associated protein, N-terminal 7 - 94 IPR032806

Functions

Description
EC Number
Subcellular Localization
PANTHER Family
PANTHER Subfamily
PANTHER Protein Class
PANTHER Pathway Category No pathway information available

No GO annotations of cellular component

Name Definition
No GO annotations for cellular component

2 GO annotations of molecular function

Name Definition
DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
transposase activity Catalysis of the transposition of transposable elements or transposons. Transposases are involved in recombination required for transposition and are site-specific for the transposon/transposable element.

1 GO annotations of biological process

Name Definition
transposition, DNA-mediated Any process involved in a type of transpositional recombination which occurs via a DNA intermediate.

3 homologous proteins in AiPD

UniProt AC Gene Name Protein Name Species Evidence Code
P75741 ybfL Putative protein YbfL Escherichia coli (strain K12) PR
P28912 yhhI H repeat-associated putative transposase YhhI Escherichia coli (strain K12) PR
P28917 ydcC H repeat-associated putative transposase YdcC Escherichia coli (strain K12) PR
10 20 30 40 50 60
MELKKLMEHI SIIPDYRQAW KVEHKLSDIL LLTICAVISG AEGWEDIEDF GETHPDFLKQ
70 80 90 100 110 120
YGDFENGIPV HDTIARVVSC ICPAKFHESF INWMLDYHSS DDKDVIAIDG KIHRHSYDKS
130 140 150 160 170 180
RRKGAIHVIS AFSTMHSLVI GQIKTDKKSN EITAIPELLN MLDIKGKIIK TDAMGCQKDI
190 200 210 220 230 240
AEKIQKQGGD YLFAVKGNQG RLNKAFEEKF PLKELNNPKH DSYAISEKSH GREETRLHIV
250
CDVPDELIDF TFE