O60741
Gene name |
HCN1 (BCNG1) |
Protein name |
Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 |
Names |
Brain cyclic nucleotide-gated channel 1 , BCNG-1 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:348980 |
EC number |
|
Protein Class |
|

Descriptions
Autoinhibitory domains (AIDs)
Target domain |
143-402 (Ion transport domain) |
Relief mechanism |
Ligand binding |
Assay |
|
Target domain |
143-402 (Ion transport domain) |
Relief mechanism |
Ligand binding |
Assay |
|
Accessory elements
No accessory elements
References
- Yeon JH et al. (2016) "Systems-wide Identification of cis-Regulatory Elements in Proteins", Cell systems, 2, 89-100
- Wicks NL et al. (2011) "Cytoplasmic cAMP-sensing domain of hyperpolarization-activated cation (HCN) channels uses two structurally distinct mechanisms to regulate voltage gating", Proceedings of the National Academy of Sciences of the United States of America, 108, 609-14
- Akimoto M et al. (2014) "A mechanism for the auto-inhibition of hyperpolarization-activated cyclic nucleotide-gated (HCN) channel opening and its relief by cAMP", The Journal of biological chemistry, 289, 22205-20
- Xu X et al. (2010) "Structural basis for the cAMP-dependent gating in the human HCN4 channel", The Journal of biological chemistry, 285, 37082-91
Autoinhibited structure

Activated structure

5 structures for O60741
Entry ID | Method | Resolution | Chain | Position | Source |
---|---|---|---|---|---|
5U6O | EM | 350 A | A/B/C/D | 1-890 | PDB |
5U6P | EM | 351 A | A/B/C/D | 1-890 | PDB |
6UQF | EM | 304 A | A/B/C/D | 1-890 | PDB |
6UQG | EM | 354 A | A/B/C/D | 1-890 | PDB |
AF-O60741-F1 | Predicted | AlphaFoldDB |
698 variants for O60741
Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
---|---|---|---|---|---|
rs1580055165 RCV000801317 |
1 | M>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs1739994846 RCV001247201 |
1 | M>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
CA359706909 rs1554040148 RCV000636488 |
9 | S>P | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV000813799 CA359706861 rs1283834151 |
16 | D>N | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
CA16611998 RCV000462613 rs1060500096 |
23 | A>V | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
rs1469192494 RCV001360732 RCV001336535 |
25 | A>E | Early infantile epileptic encephalopathy with suppression bursts Developmental and epileptic encephalopathy, 24 [ClinVar] | Yes |
ClinVar dbSNP |
rs1740005870 RCV001057738 |
27 | A>T | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV000513246 RCV002318494 CA16611919 RCV000462927 VAR_061105 rs56164833 |
42 | P>S | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar UniProt TOPMed dbSNP gnomAD |
CA16612082 rs1060500095 RCV000477132 |
43 | P>L | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
CA359706688 rs1421975269 RCV001066173 CA359706686 |
44 | G>R | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
RCV002313025 CA238962 RCV000173511 RCV000469190 rs544994462 RCV001618325 VAR_071825 |
47 | G>V | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases DEE24; likely benign variant [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt 1000Genomes ExAC TOPMed dbSNP gnomAD |
CA359706628 RCV000636366 rs1554040137 |
53 | H>P | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV002313153 RCV000734431 RCV001764368 CA359706627 CA3259509 RCV000457427 rs10066808 |
53 | H>Q | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
rs1245405853 CA359706625 RCV001266029 |
54 | G>R | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
RCV001071822 rs900254081 RCV002554634 CA118329975 |
61 | V>L | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
RCV000539382 rs1554040132 |
67 | G>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs748849525 RCV000551860 RCV002316536 |
67 | G>missing | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
rs1427664939 RCV002313570 CA359706538 |
67 | G>R | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
rs774065762 RCV001346329 |
69 | G>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs774065762 RCV001211617 |
69 | G>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV000695103 rs1485709375 RCV002317921 RCV002253568 |
70 | G>missing | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
RCV001302175 RCV002511075 rs747975797 |
71 | G>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV002418432 RCV001729606 RCV000476818 rs56064803 RCV001729605 RCV001252506 |
72 | G>missing | Early infantile epileptic encephalopathy with suppression bursts Intellectual disability Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
rs56064803 RCV002311699 RCV001080810 RCV000082059 RCV000711880 |
72 | G>missing | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
rs747975797 RCV002316537 RCV000545196 RCV001788280 RCV000173513 |
72 | G>missing | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
RCV000173510 RCV000513768 rs747975797 RCV001080821 RCV002312704 RCV000987523 |
72 | G>missing | Developmental and epileptic encephalopathy, 24 Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
RCV001079666 RCV000592162 rs747975797 RCV002311361 RCV000440326 |
73 | G>missing | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
rs747975797 RCV000802189 RCV003133630 |
73 | G>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs1193693102 RCV001041096 |
74 | G>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV003129866 RCV002429562 RCV000475843 rs747975797 RCV000380928 |
74 | G>missing | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
RCV000705338 rs747975797 RCV001766556 RCV000987522 RCV002424712 |
74 | G>missing | Early infantile epileptic encephalopathy with suppression bursts Developmental and epileptic encephalopathy, 24 Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
RCV001726489 RCV001343108 rs754966256 |
76 | E>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs754990881 RCV001221517 |
80 | G>C | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
CA359706459 RCV000594451 RCV001203205 rs1252720341 |
80 | G>D | Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; 0.0 impact. [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar NCI-TCGA dbSNP gnomAD |
VAR_082653 | 85 | E>A | GEFSP10; unknown pathological significance [UniProt] | Yes | UniProt |
CA10605797 RCV001294379 RCV000288763 rs868228427 |
85 | E>D | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
RCV001484249 CA3259488 rs760568557 |
86 | G>R | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
RCV002316539 CA3259486 RCV000547258 rs370113959 |
87 | P>S | Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; 0.0 impact. Inborn genetic diseases [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
rs774375241 RCV001350797 CA3259484 |
88 | R>G | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
rs1739997928 RCV001041830 |
89 | R>Q | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs747066400 RCV002279964 RCV000818909 |
92 | G>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs1255874115 RCV000800057 |
93 | F>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV001344227 CA3259476 CA359706368 rs748665278 RCV001336534 |
94 | M>I | Developmental and epileptic encephalopathy, 24 Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
rs773441535 RCV000702096 CA3259478 |
94 | M>V | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
RCV000998381 RCV002549089 CA359706348 rs1580055035 |
97 | Q>R | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV001054782 rs1739996970 |
99 | T>G | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV001308984 CA3259471 rs780364002 |
100 | S>A | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
CA163272 RCV001054783 rs587777492 RCV000128459 VAR_071826 |
100 | S>F | Early infantile epileptic encephalopathy with suppression bursts Developmental and epileptic encephalopathy, 24 Variant assessed as Somatic; impact. DEE24; dominant-negative mutation resulting in gain of channel function [ClinVar, NCI-TCGA, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl NCI-TCGA dbSNP |
rs1456742212 RCV001064376 CA359706322 |
101 | M>I | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
RCV001351279 rs1739995339 |
128 | K>R | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs1554040120 RCV000590947 |
137 | P>* | Developmental and epileptic encephalopathy, 24 [ClinVar] | Yes |
ClinVar dbSNP |
VAR_082654 | 143 | F>Y | DEE24; unknown pathological significance [UniProt] | Yes | UniProt |
RCV002318199 CA118324615 RCV002260665 RCV001868371 rs890733454 |
151 | I>V | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV000786046 RCV000417011 VAR_078216 rs1057519548 TCGA novel CA16044318 |
153 | M>I | Developmental and epileptic encephalopathy, 24 Variant assessed as Somatic; impact. DEE24; affects channel gating properties; the half-activation voltage is shifted to the depolarizing direction; significantly faster activation and slower deactivation kinetics than wild-type channel [ClinVar, NCI-TCGA, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP NCI-TCGA |
rs1561230606 VAR_082655 RCV000786053 CA359707844 |
157 | L>V | Generalized epilepsy with febrile seizures plus, type 10 GEFSP10; unknown pathological significance; reduced current density; affects channel gating properties as the half-activation voltage is shifted to the depolarizing direction; neurons expressing mutant channels show increased excitability [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
rs1745533139 RCV001066815 |
159 | I>M | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
VAR_082656 | 171 | T>R | GEFSP10; unknown pathological significance [UniProt] | Yes | UniProt |
VAR_082657 | 172 | T>P | GEFSP10; unknown pathological significance [UniProt] | Yes | UniProt |
CA16611854 rs1060500097 RCV000469716 |
186 | F>L | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
rs1444972054 RCV000559668 CA359707510 |
206 | I>V | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
rs1745529939 RCV001252507 |
221 | W>R | Intellectual disability [ClinVar] | Yes |
ClinVar dbSNP |
RCV001210919 CA3259424 rs754468811 |
226 | F>L | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
CA359707347 rs1561230513 RCV002318669 |
229 | S>T | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV001295516 rs1745529492 |
232 | V>M | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV000535446 rs1554037381 CA359707309 |
234 | Y>F | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
CA359707267 RCV000636300 rs1554037379 |
240 | E>D | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV000786048 VAR_082658 CA359707246 rs1561230486 |
243 | M>R | Generalized epilepsy with febrile seizures plus, type 10 GEFSP10; significantly decreased current densities [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
RCV001295634 rs1745528879 |
243 | M>V | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs1561230479 RCV002318360 RCV001362313 CA359707229 |
245 | S>F | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV001565469 rs1745528455 RCV001301157 |
255 | R>C | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
VAR_082659 | 260 | T>I | GEFSP10; unknown pathological significance [UniProt] | Yes | UniProt |
rs1554037378 RCV000623856 VAR_082660 CA359707127 |
261 | K>E | Inborn genetic diseases DEE24; unknown pathological significance [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
rs763339068 VAR_082661 CA359707106 RCV000815698 |
264 | S>C | Early infantile epileptic encephalopathy with suppression bursts found in a patient with infantile-onset epilepsy; unknown pathological significance [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC dbSNP gnomAD |
rs1745528201 RCV001206856 |
265 | L>I | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
VAR_071827 rs587777493 RCV000128460 CA163273 RCV000486307 |
272 | S>P | Developmental and epileptic encephalopathy, 24 DEE24; dominant-negative mutation resulting in loss of channel currents [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
RCV001302856 rs1745526984 |
277 | Y>* | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
VAR_071828 COSM3744896 RCV000128462 rs587777495 CA163275 |
279 | H>Y | Developmental and epileptic encephalopathy, 24 liver Variant assessed as Somatic; impact. DEE24; results in a gain of channel function [ClinVar, Cosmic, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt Ensembl NCI-TCGA dbSNP |
rs1741171789 RCV001260717 |
284 | I>T | Intellectual disability [ClinVar] | Yes |
ClinVar dbSNP |
rs587777494 RCV000128461 VAR_071829 CA163274 |
297 | R>T | Developmental and epileptic encephalopathy, 24 Variant assessed as Somatic; impact. DEE24; dominant-negative mutation resulting in loss of channel currents [ClinVar, NCI-TCGA, UniProt] | Yes |
ClinGen ClinVar UniProt NCI-TCGA dbSNP gnomAD |
VAR_082663 CA16604906 rs1057521989 RCV000444585 RCV001637015 |
305 | M>L | Developmental and epileptic encephalopathy, 24 DEE24; absence of hyperpolarization-activated currents; highly reduced amount of protein at the cell membrane [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
RCV001312737 rs1741169756 |
312 | D>V | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
CA359704741 RCV000786051 rs1318391259 VAR_082664 |
329 | C>S | Generalized epilepsy with febrile seizures plus, type 10 GEFSP10; decreased current density; voltage-dependence of activation as well as the activation and deactivation kinetics are not altered [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt TOPMed dbSNP |
RCV000177323 CA243476 RCV001852189 rs794727517 |
330 | W>C | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
rs1051256215 RCV001340049 CA118303541 |
336 | M>I | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP ClinGen TOPMed |
rs1739693084 RCV001034511 |
365 | A>V | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs1561139596 CA359705336 RCV001465832 |
380 | I>T | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
rs750838439 RCV000696511 CA3259359 |
381 | V>I | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
rs1739692080 RCV001304221 |
383 | A>T | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
VAR_082666 | 391 | G>C | GEFSP10; affects channel gating properties as the half-activation voltage is shifted to the hyperpolarizing direction [UniProt] | Yes | UniProt |
CA16044317 RCV000416966 RCV000585842 VAR_078217 rs1057519547 |
391 | G>D | Developmental and epileptic encephalopathy, 24 DEE24; results in absence of hyperpolarization-activated currents; reduced amount of protein at the cell membrane [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
RCV001731925 RCV001382081 RCV002290034 VAR_082667 rs1561139569 RCV000786049 CA359705265 |
391 | G>S | Early infantile epileptic encephalopathy with suppression bursts Developmental and epileptic encephalopathy, 24 Generalized epilepsy with febrile seizures plus, type 10 GEFSP10; affects channel gating properties as the half-activation voltage is shifted to the depolarizing direction; reduced amount of protein at the cell membrane [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
rs1739691445 RCV001058211 |
392 | H>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV001253020 RCV001052150 rs1739691061 |
395 | A>T | Early infantile epileptic encephalopathy with suppression bursts Developmental and epileptic encephalopathy, 24 [ClinVar] | Yes |
ClinVar dbSNP |
RCV001033997 rs1739691000 |
396 | L>I | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
VAR_082668 | 397 | I>L | DEE24; the half-activation voltage is shifted to the depolarizing direction; reduced amount of protein at the cell membrane [UniProt] | Yes | UniProt |
VAR_082669 | 399 | S>P | DEE24; results in absence of hyperpolarization-activated currents; reduced amount of protein at the cell membrane [UniProt] | Yes | UniProt |
rs587777491 CA163271 RCV000128458 RCV001169921 VAR_071830 |
401 | D>H | Developmental and epileptic encephalopathy, 24 DEE24; results in a gain of channel function [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
RCV000786052 VAR_082670 CA359702278 rs1561120793 |
414 | V>M | Generalized epilepsy with febrile seizures plus, type 10 GEFSP10; results in a depolarizing shift of the half-activation voltage and faster activation kinetics [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
RCV001224484 rs1746946756 |
436 | E>K | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs1746946512 RCV001262644 |
441 | G>D | Generalized epilepsy with febrile seizures plus, type 10 [ClinVar] | Yes |
ClinVar dbSNP |
rs1234068441 RCV000550634 CA359702041 |
446 | E>K | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
rs752944351 RCV000706719 CA3259314 |
448 | N>S | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
CA118291023 RCV001062285 rs945853543 |
451 | N>D | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
RCV001067059 rs1375816918 CA359701954 |
459 | E>Q | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
CA118283641 rs773990933 RCV001351975 |
467 | R>P | Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; impact. [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
RCV001057897 rs1745673600 |
482 | N>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV001352584 rs1745673386 |
489 | S>N | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV002066109 rs35229491 CA118283633 COSM420688 |
504 | R>* | Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; 0.0 impact. central_nervous_system urinary_tract [ClinVar, NCI-TCGA, Cosmic] | Yes |
ClinGen cosmic curated ClinVar NCI-TCGA dbSNP gnomAD |
rs1685224516 RCV001200515 RCV001319120 |
507 | A>T | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV000636328 CA3259274 RCV001815359 COSM265902 rs180790607 |
508 | V>M | Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; 0.0 impact. large_intestine urinary_tract [ClinVar, NCI-TCGA, Cosmic] | Yes |
ClinGen cosmic curated ClinVar 1000Genomes ExAC NCI-TCGA TOPMed dbSNP gnomAD |
RCV001253258 rs1745671912 |
521 | G>V | Developmental and epileptic encephalopathy, 24 [ClinVar] | Yes |
ClinVar dbSNP |
RCV000688463 rs1561096281 CA359702427 |
524 | T>A | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
COSM161462 rs1554014649 RCV000538794 CA359705962 |
548 | R>H | Early infantile epileptic encephalopathy with suppression bursts breast [ClinVar, Cosmic] | Yes |
ClinGen cosmic curated ClinVar Ensembl dbSNP |
RCV001207378 CA118278939 rs936848980 |
552 | S>T | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
CA118278938 RCV001237739 rs924134838 |
553 | V>I | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
RCV001267391 rs1744875571 |
560 | R>G | Inborn genetic diseases [ClinVar] | Yes |
ClinVar dbSNP |
CA118278937 rs766943052 RCV002318180 RCV002533056 COSM1165564 |
566 | V>M | Early infantile epileptic encephalopathy with suppression bursts large_intestine Inborn genetic diseases [ClinVar, Cosmic] | Yes |
ClinGen cosmic curated ClinVar dbSNP gnomAD |
CA359705694 RCV000714812 rs1561081327 |
585 | T>S | Developmental and epileptic encephalopathy, 24 [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
COSM3342998 rs1561081319 CA359705632 RCV000786050 VAR_082671 |
590 | R>Q | Generalized epilepsy with febrile seizures plus, type 10 pancreas Variant assessed as Somatic; impact. GEFSP10; decreased current densities; half-activation voltage is slightly shifted to the hyperpolarizing direction [ClinVar, Cosmic, NCI-TCGA, UniProt] | Yes |
ClinGen cosmic curated ClinVar UniProt Ensembl NCI-TCGA dbSNP |
RCV001256055 RCV001063315 CA118278935 rs989268235 |
593 | R>G | Early infantile epileptic encephalopathy with suppression bursts Intellectual disability Variant assessed as Somatic; 0.0 impact. [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar NCI-TCGA dbSNP gnomAD |
rs769934821 COSM189264 CA3259235 RCV001339596 RCV002402939 |
593 | R>Q | Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; 0.0 impact. large_intestine skin Inborn genetic diseases [ClinVar, NCI-TCGA, Cosmic] | Yes |
ClinGen cosmic curated ClinVar ExAC NCI-TCGA TOPMed dbSNP gnomAD |
TCGA novel rs1579766327 RCV000815432 CA359705596 |
594 | I>V | Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; impact. [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar NCI-TCGA Ensembl dbSNP |
rs754531784 CA359704563 RCV001234228 RCV000820070 |
619 | N>K | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP ClinGen ExAC TOPMed gnomAD |
CA359704471 rs1226802525 CA359704469 RCV000531814 COSM351232 |
632 | M>I | Early infantile epileptic encephalopathy with suppression bursts lung [ClinVar, Cosmic] | Yes |
ClinGen cosmic curated ClinVar dbSNP gnomAD |
RCV000704607 CA359704463 rs1561079474 |
634 | Q>K | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
CA359704380 RCV002316072 rs1175835174 |
646 | T>S | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
rs776850213 RCV001329207 |
650 | T>P | Developmental and epileptic encephalopathy, 24 [ClinVar] | Yes |
ClinVar dbSNP |
rs771934361 CA3259195 RCV000463713 |
651 | S>W | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
rs1744773562 RCV001214972 |
654 | T>A | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs1744773302 RCV001203898 |
656 | P>R | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs1744773336 RCV001209038 |
656 | P>T | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV001040647 CA3259188 rs748070273 |
657 | T>A | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
RCV000820149 RCV001766735 rs745561895 CA3259187 |
659 | R>C | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
RCV001547515 RCV000636396 CA359704300 rs1335934380 |
660 | M>I | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
CA16612072 rs142280884 RCV000472092 |
670 | A>E | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
RCV000591084 rs373454105 RCV001089002 CA3259184 |
670 | A>T | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
rs142280884 RCV001726485 CA3259183 RCV001316066 |
670 | A>V | Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; 0.0 impact. [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
VAR_082672 | 680 | S>Y | GEFSP10; unknown pathological significance [UniProt] | Yes | UniProt |
RCV001471101 CA359704173 rs1561079334 |
681 | P>S | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
rs745344977 CA3259170 RCV000636334 |
683 | P>T | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
RCV000636315 rs748584173 CA3259167 |
687 | T>N | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
rs1561079301 CA359704104 RCV000702803 |
692 | A>G | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV001221935 rs1222433760 |
694 | L>V | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs750463999 CA3259161 RCV000885324 |
695 | S>A | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
rs147007826 CA3259158 RCV000702758 |
702 | A>V | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
rs1293827335 RCV001245012 CA359704034 |
704 | C>Y | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
rs1744766400 RCV001052750 |
709 | Q>missing | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
CA359703967 rs1486444621 VAR_082673 |
715 | R>G | GEFSP10; unknown pathological significance [UniProt] | Yes |
ClinGen UniProt dbSNP gnomAD |
rs1744765469 RCV001034510 |
720 | A>D | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
rs141383188 CA359703910 RCV001218961 |
724 | A>S | Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; impact. [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
COSM1543895 CA3259153 rs141383188 RCV000867855 |
724 | A>T | lung Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; 0.0 impact. central_nervous_system [Cosmic, ClinVar, NCI-TCGA] | Yes |
ClinGen cosmic curated ClinVar 1000Genomes ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
RCV001034103 rs1744764524 |
727 | L>M | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV001233048 rs1744764294 |
730 | M>T | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
CA359703806 rs1418945597 RCV000807663 RCV002293483 |
739 | Q>R | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
rs560701504 CA3259145 RCV000558459 RCV002316538 |
743 | P>A | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
COSM1068488 RCV002542069 rs1252725512 RCV002537566 CA359703769 |
744 | P>L | Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; 0.0 impact. endometrium Inborn genetic diseases [ClinVar, NCI-TCGA, Cosmic] | Yes |
ClinGen cosmic curated ClinVar NCI-TCGA dbSNP gnomAD |
RCV001405500 RCV002314476 CA3259140 rs758226055 |
751 | P>A | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
rs1744762137 RCV001260716 |
754 | Q>* | Intellectual disability [ClinVar] | Yes |
ClinVar dbSNP |
RCV001492690 CA359703685 rs1579762677 |
757 | T>I | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
CA3259134 RCV000805676 rs760215449 |
768 | H>D | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
RCV002316077 rs1561079128 CA359703616 |
768 | H>P | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV001326380 rs1561079128 |
768 | H>R | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
CA3259130 RCV001312418 rs149702217 |
774 | L>P | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP |
CA3259124 RCV000799789 rs778039525 |
785 | P>S | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
rs150936707 CA3259119 RCV001662772 RCV000764610 RCV000699512 |
797 | V>G | Developmental and epileptic encephalopathy, 24 Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
rs1461281527 RCV001071222 CA359703406 |
802 | S>P | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
CA359703372 RCV002274147 rs1244303801 RCV001209767 COSM360033 RCV002451452 |
807 | T>S | lung Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar TOPMed dbSNP |
rs1413473165 CA359703322 RCV000799798 |
816 | P>R | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
CA3259105 COSM1068486 rs371602396 RCV001219541 |
821 | A>V | Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; 0.0 impact. endometrium [ClinVar, NCI-TCGA, Cosmic] | Yes |
ClinGen cosmic curated ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
RCV002427030 RCV000817889 CA3259100 rs780209007 |
831 | G>S | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC dbSNP gnomAD |
RCV000519557 CA359703229 RCV000808238 rs199887416 |
832 | R>K | Early infantile epileptic encephalopathy with suppression bursts Variant assessed as Somatic; impact. [ClinVar, NCI-TCGA] | Yes |
ClinGen ClinVar 1000Genomes NCI-TCGA dbSNP |
CA118278349 RCV001257219 rs199887416 |
832 | R>T | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes dbSNP |
rs368989823 RCV001449135 CA3259094 |
836 | P>L | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
rs201368368 CA3259085 RCV001034266 |
852 | P>Q | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
rs1060500094 CA16611996 RCV000467838 |
854 | R>P | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
rs755932633 RCV001041228 |
855 | G>E | Early infantile epileptic encephalopathy with suppression bursts [ClinVar] | Yes |
ClinVar dbSNP |
RCV002312350 rs761866949 CA3259070 RCV001034308 |
879 | P>T | Early infantile epileptic encephalopathy with suppression bursts Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
CA359706947 rs1271471544 |
3 | G>E | No |
ClinGen gnomAD |
|
TCGA novel | 3 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1156299203 CA359706921 |
7 | P>R | No |
ClinGen TOPMed gnomAD |
|
rs1445930484 CA359706914 |
8 | N>S | No |
ClinGen gnomAD |
|
CA359706905 rs1282790075 |
9 | S>Y | No |
ClinGen TOPMed |
|
rs1453769463 CA359706899 |
10 | S>L | No |
ClinGen TOPMed |
|
rs1194673599 CA359706878 |
13 | S>R | No |
ClinGen TOPMed |
|
CA359706874 rs1252734883 |
14 | R>Q | No |
ClinGen TOPMed |
|
TCGA novel | 17 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359706835 rs1237981237 |
19 | S>R | No |
ClinGen gnomAD |
|
TCGA novel | 21 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359706824 rs1470715710 |
21 | F>Y | No |
ClinGen TOPMed gnomAD |
|
rs1316303062 CA359706807 |
24 | K>E | No |
ClinGen gnomAD |
|
CA359706796 rs1469192494 |
25 | A>G | No |
ClinGen TOPMed |
|
TCGA novel | 25 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1461851528 CA359706783 |
27 | A>V | No |
ClinGen TOPMed |
|
CA359706771 rs1391977771 |
29 | G>V | No |
ClinGen TOPMed |
|
TCGA novel | 32 | P>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA3259513 rs773224896 |
32 | P>R | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 34 | A>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1344167758 CA359706738 |
35 | A>V | No |
ClinGen TOPMed gnomAD |
|
rs1295976476 CA359706733 |
36 | E>K | No |
ClinGen TOPMed gnomAD |
|
CA359706716 rs761449013 |
38 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3259511 rs761449013 |
38 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs761449013 CA3259512 |
38 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 42 | P>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1060500095 CA359706690 |
43 | P>Q | No |
ClinGen TOPMed gnomAD |
|
rs1561248623 | 45 | G>A | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
rs1031913850 CA359706675 |
46 | G>C | No |
ClinGen TOPMed gnomAD |
|
CA118329979 rs1031913850 |
46 | G>S | No |
ClinGen TOPMed gnomAD |
|
rs866992298 CA118329978 |
48 | A>S | No |
ClinGen Ensembl |
|
CA359706662 rs1415475910 |
48 | A>V | No |
ClinGen TOPMed |
|
CA359706659 rs1214766208 |
49 | G>S | No |
ClinGen gnomAD |
|
rs1462816724 CA359706655 |
50 | A>T | No |
ClinGen gnomAD |
|
CA359706631 rs1467006341 |
53 | H>Y | No |
ClinGen TOPMed |
|
rs1245405853 CA359706624 |
54 | G>C | No |
ClinGen gnomAD |
|
rs1391013594 CA359706623 |
54 | G>D | No |
ClinGen TOPMed |
|
CA359706585 rs1298378220 |
59 | F>L | No |
ClinGen gnomAD |
|
CA359706571 rs1275868182 |
62 | D>N | No |
ClinGen gnomAD |
|
rs1554040136 RCV000585338 CA359706567 |
62 | D>V | No |
ClinGen ClinVar Ensembl dbSNP |
|
CA359706563 rs1406370096 |
63 | G>S | No |
ClinGen gnomAD |
|
rs1365874820 CA359706557 |
64 | G>S | No |
ClinGen gnomAD |
|
CA359706545 rs1356150414 |
66 | G>S | No |
ClinGen gnomAD |
|
CA118329972 rs941855168 |
67 | G>A | No |
ClinGen TOPMed |
|
CA359706539 rs1427664939 |
67 | G>S | No |
ClinGen TOPMed gnomAD |
|
rs1201375181 CA359706527 |
69 | G>S | No |
ClinGen gnomAD |
|
CA359706519 rs1269949873 |
70 | G>D | No |
ClinGen gnomAD |
|
TCGA novel | 70 | G>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359706522 rs1255330911 |
70 | G>S | No |
ClinGen TOPMed |
|
rs1487553404 CA359706514 |
71 | G>D | No |
ClinGen gnomAD |
|
CA3259505 rs771362022 |
71 | G>R | No |
ClinGen ExAC gnomAD |
|
CA359706515 rs771362022 |
71 | G>S | No |
ClinGen ExAC gnomAD |
|
rs1205869080 CA359706508 |
72 | G>D | No |
ClinGen gnomAD |
|
VAR_085692 | 72 | G>del | No | UniProt | |
CA359706495 rs1282259414 |
74 | G>V | No |
ClinGen TOPMed gnomAD |
|
rs1282259414 CA359706497 |
74 | G>D | No |
ClinGen TOPMed gnomAD |
|
CA3259502 rs747284102 |
74 | G>R | No |
ClinGen ExAC gnomAD |
|
rs1374925949 CA359706492 |
75 | E>K | No |
ClinGen gnomAD |
|
COSM1311172 rs1348079874 CA359706473 |
77 | P>L | biliary_tract Variant assessed as Somatic; impact. urinary_tract [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
rs1561248449 CA359706476 |
77 | P>T | No |
ClinGen Ensembl |
|
CA359706471 rs376072704 |
78 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3259494 rs376072704 |
78 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
rs1178320320 CA359706468 |
78 | A>V | No |
ClinGen gnomAD |
|
CA359706462 rs1430178931 |
79 | G>V | No |
ClinGen gnomAD |
|
TCGA novel | 80 | G>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs754990881 CA3259491 |
80 | G>S | No |
ClinGen ExAC gnomAD |
|
RCV000292789 CA10605354 rs886043302 |
81 | F>Y | No |
ClinGen ClinVar Ensembl dbSNP |
|
rs1256720723 CA359706431 |
84 | A>S | No |
ClinGen gnomAD |
|
CA359706418 rs1230569941 |
86 | G>E | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 86 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359706413 rs1397144091 |
87 | P>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
CA359706415 rs370113959 |
87 | P>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1173138693 CA359706409 |
88 | R>Q | No |
ClinGen TOPMed |
|
CA3259480 rs769305273 |
90 | Q>K | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 91 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1413239994 CA359706386 |
92 | G>C | No |
ClinGen TOPMed gnomAD |
|
CA3259477 rs772623522 |
94 | M>K | No |
ClinGen ExAC gnomAD |
|
CA118329970 rs980130181 |
95 | Q>H | No |
ClinGen TOPMed |
|
rs143865339 CA3259473 COSM3744897 |
99 | T>I | liver [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ESP ExAC gnomAD |
rs779325604 CA3259475 |
99 | T>P | No |
ClinGen ExAC |
|
rs780364002 CA359706331 |
100 | S>P | No |
ClinGen ExAC TOPMed gnomAD |
|
rs886042909 RCV000383662 CA10604848 |
102 | L>Q | No |
ClinGen ClinVar Ensembl dbSNP |
|
rs1580054993 CA359706295 |
106 | V>I | No |
ClinGen Ensembl |
|
rs1350895787 CA359706263 |
110 | S>A | No |
ClinGen gnomAD |
|
rs1454909271 CA359706247 |
113 | M>V | No |
ClinGen TOPMed |
|
TCGA novel | 116 | S>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359706204 rs1580054978 |
118 | K>R | No |
ClinGen Ensembl |
|
rs1383711113 CA359706197 |
119 | A>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
rs764078270 CA3259465 |
125 | E>K | No |
ClinGen ExAC gnomAD |
|
CA359706137 rs1445746755 |
127 | V>A | No |
ClinGen gnomAD |
|
TCGA novel | 128 | K>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 136 | H>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 136 | H>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359706071 rs1449113518 |
137 | P>T | No |
ClinGen gnomAD |
|
rs1412112806 CA359707948 |
143 | F>V | No |
ClinGen gnomAD |
|
CA359707898 rs1561230611 |
149 | M>R | No |
ClinGen Ensembl |
|
CA359707890 rs1401736234 |
150 | L>P | No |
ClinGen gnomAD |
|
rs1170404648 CA359707885 |
151 | I>T | No |
ClinGen gnomAD |
|
rs1237420066 CA359707814 |
162 | V>F | No |
ClinGen gnomAD |
|
CA359707805 RCV000998380 rs1554037393 |
163 | G>E | No |
ClinGen ClinVar Ensembl dbSNP |
|
RCV000659014 rs1554037393 CA359707803 |
163 | G>V | No |
ClinGen ClinVar Ensembl dbSNP |
|
CA118324614 rs1051987854 |
165 | T>I | No |
ClinGen gnomAD |
|
rs1375271702 CA359707747 |
171 | T>I | No |
ClinGen gnomAD |
|
rs1244449353 CA359707739 |
173 | T>A | No |
ClinGen TOPMed gnomAD |
|
rs1244449353 CA359707740 |
173 | T>P | No |
ClinGen TOPMed gnomAD |
|
CA359707720 rs1213411974 |
175 | W>C | No |
ClinGen TOPMed |
|
rs1580015079 CA359707693 |
179 | N>S | No |
ClinGen Ensembl |
|
TCGA novel | 184 | T>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 187 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA3259429 rs374770620 |
200 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
TCGA novel | 202 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 203 | S>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 204 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1177307612 CA359707486 |
209 | D>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
CA3259428 rs777694712 |
211 | K>E | No |
ClinGen ExAC gnomAD |
|
rs527655367 CA118324609 |
214 | K>R | No |
ClinGen 1000Genomes |
|
rs1439791679 CA359707446 COSM1543876 |
215 | M>I | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
rs975527828 CA118324608 |
215 | M>V | No |
ClinGen Ensembl |
|
TCGA novel | 216 | N>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 217 | Y>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1176738324 CA359707423 |
218 | L>* | No |
ClinGen gnomAD |
|
CA359707373 COSM345760 rs1358419731 |
225 | D>Y | lung [Cosmic] | No |
ClinGen cosmic curated TOPMed |
rs1209237249 CA359707359 |
227 | I>V | No |
ClinGen gnomAD |
|
TCGA novel | 232 | V>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 232 | V>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs377021158 CA118324607 |
235 | I>V | No |
ClinGen ESP TOPMed gnomAD |
|
TCGA novel | 240 | E>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1385693706 CA359707232 |
245 | S>A | No |
ClinGen gnomAD |
|
rs1447763725 CA359707195 |
250 | T>R | No |
ClinGen gnomAD |
|
rs764449940 CA3259419 |
252 | R>W | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 262 | I>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs763339068 CA3259418 |
264 | S>G | No |
ClinGen ExAC gnomAD |
|
COSM1158485 rs951258297 CA118324606 |
267 | R>H | pancreas Variant assessed as Somatic; 4.638e-05 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
rs541911994 COSM3722007 CA3259415 |
270 | R>* | upper_aerodigestive_tract Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
rs868261838 CA118324605 |
273 | R>K | No |
ClinGen Ensembl |
|
VAR_082662 | 275 | I>T | found in a patient with childhood focal epilepsy; unknown pathological significance [UniProt] | No | UniProt |
CA359707027 rs1417499521 |
276 | R>S | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 280 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs771334137 CA3259413 |
281 | W>* | No |
ClinGen ExAC gnomAD |
|
rs776842143 CA3259414 |
281 | W>R | No |
ClinGen ExAC gnomAD |
|
CA359705109 rs1191518802 |
285 | F>Y | No |
ClinGen gnomAD |
|
CA118303547 rs267600646 |
287 | M>I | No |
ClinGen Ensembl |
|
rs1320495749 CA359705064 |
291 | L>F | No |
ClinGen gnomAD |
|
rs760795887 CA3259394 |
296 | V>G | No |
ClinGen ExAC gnomAD |
|
rs587777494 CA359705027 |
297 | R>K | No |
ClinGen gnomAD |
|
rs1214072611 CA359704987 |
303 | G>S | No |
ClinGen gnomAD |
|
TCGA novel | 313 | G>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 314 | C>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs373350950 CA3259390 |
318 | L>F | No |
ClinGen ESP ExAC gnomAD |
|
TCGA novel | 320 | P>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs149434809 CA3259387 |
321 | L>P | No |
ClinGen ESP ExAC |
|
CA118303544 rs1000142153 |
327 | P>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
TCGA novel | 327 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1318391259 CA359704748 |
329 | C>F | No |
ClinGen TOPMed |
|
COSM227488 CA118296219 rs867237478 |
339 | D>N | Variant assessed as Somatic; impact. skin [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated Ensembl NCI-TCGA |
TCGA novel | 341 | W>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA3259370 rs775459159 |
342 | G>V | No |
ClinGen ExAC gnomAD |
|
rs1009540904 CA118296218 |
344 | Q>K | No |
ClinGen Ensembl |
|
CA118296217 rs754168983 |
344 | Q>L | No |
ClinGen Ensembl |
|
CA359705609 rs1561139629 |
345 | Y>D | No |
ClinGen Ensembl |
|
rs868143772 CA118296216 |
346 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
TCGA novel | 346 | S>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1333872397 COSM592804 CA359705570 |
348 | A>T | lung Variant assessed as Somatic; impact. endometrium [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
CA359705481 rs1239313304 |
360 | G>W | No |
ClinGen gnomAD |
|
rs1374655408 CA359705470 |
361 | Y>F | No |
ClinGen gnomAD |
|
TCGA novel | 364 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 364 | Q>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA118296215 rs191789690 COSM1437705 |
376 | M>I | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated 1000Genomes NCI-TCGA |
TCGA novel | 379 | M>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
VAR_082665 | 379 | M>R | found in a patient with intellectual disability and language delay; unknown pathological significance [UniProt] | No | UniProt |
CA3259358 rs767640754 |
381 | V>A | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 382 | G>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1579867065 CA359705324 |
382 | G>V | No |
ClinGen Ensembl |
|
TCGA novel | 387 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359705259 rs1254995286 |
392 | H>Y | No |
ClinGen gnomAD |
|
CA359705250 rs1561139558 |
393 | A>D | No |
ClinGen Ensembl |
|
rs13436341 CA118296213 |
394 | T>P | No |
ClinGen Ensembl |
|
TCGA novel | 396 | L>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 400 | L>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 403 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1286098000 CA359705184 |
404 | R>G | No |
ClinGen gnomAD |
|
rs1351333514 COSM449714 CA359705174 |
405 | R>Q | breast [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
rs375110542 CA3259350 |
405 | R>W | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA gnomAD |
rs746453898 CA3259348 |
407 | Y>* | No |
ClinGen ExAC gnomAD |
|
CA3259322 rs368892345 |
418 | M>L | No |
ClinGen ESP ExAC gnomAD |
|
CA359702235 rs1161759568 |
419 | S>L | No |
ClinGen gnomAD |
|
TCGA novel | 419 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs935933583 CA118291026 |
421 | H>L | No |
ClinGen TOPMed |
|
rs140166527 CA3259320 |
422 | K>T | No |
ClinGen ESP ExAC gnomAD |
|
CA3259319 rs781744218 |
423 | L>* | No |
ClinGen ExAC gnomAD |
|
rs1334729712 CA359702201 |
424 | P>L | No |
ClinGen TOPMed |
|
rs1199035368 CA359702206 |
424 | P>T | No |
ClinGen gnomAD |
|
CA118291025 rs907851684 |
427 | M>I | No |
ClinGen Ensembl |
|
rs1265198753 COSM240080 CA359702175 |
428 | R>H | Variant assessed as Somatic; 0.0 impact. central_nervous_system prostate [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
CA3259317 rs747175226 |
432 | H>R | No |
ClinGen ExAC gnomAD |
|
CA359702138 rs1257229224 |
433 | D>G | No |
ClinGen gnomAD |
|
CA3259316 rs777839957 |
434 | Y>H | No |
ClinGen ExAC gnomAD |
|
rs1337764830 CA359702090 |
439 | Y>F | No |
ClinGen gnomAD |
|
rs375902844 CA359702081 |
440 | Q>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA118291024 rs867804269 |
445 | D>A | No |
ClinGen Ensembl |
|
rs1449411437 CA359702017 |
449 | I>F | No |
ClinGen gnomAD |
|
rs146123836 CA3259313 RCV001311650 |
450 | L>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ClinVar ESP ExAC NCI-TCGA TOPMed dbSNP gnomAD |
CA118291022 rs868820215 |
451 | N>S | No |
ClinGen Ensembl |
|
CA359701993 rs1201587793 |
453 | L>I | No |
ClinGen TOPMed |
|
CA359701984 rs1426831704 |
454 | N>T | No |
ClinGen gnomAD |
|
CA3259311 rs753544190 |
454 | N>Y | No |
ClinGen ExAC gnomAD |
|
rs866047521 CA118291021 |
455 | D>N | No |
ClinGen Ensembl |
|
TCGA novel | 455 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs966376899 CA118283642 |
461 | I>T | No |
ClinGen Ensembl |
|
rs1561096410 CA359702845 |
462 | V>I | No |
ClinGen Ensembl |
|
TCGA novel | 463 | N>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359702836 rs1218893074 |
463 | N>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
rs1354976296 CA359702823 |
465 | N>D | No |
ClinGen gnomAD |
|
rs773990933 CA3259285 |
467 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs1381751342 CA359702805 |
468 | K>E | No |
ClinGen gnomAD |
|
TCGA novel | 469 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1353247808 CA359702742 |
477 | A>S | No |
ClinGen gnomAD |
|
rs762522770 CA3259283 |
479 | A>V | No |
ClinGen ExAC gnomAD |
|
rs997453240 CA118283639 |
480 | D>E | No |
ClinGen Ensembl |
|
CA118283640 rs771234977 |
480 | D>H | No |
ClinGen ExAC TOPMed gnomAD |
|
CA359702725 rs771234977 |
480 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3259281 COSM1311168 rs771234977 |
480 | D>Y | Variant assessed as Somatic; 0.0 impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
CA118283638 rs868777099 |
481 | P>S | No |
ClinGen Ensembl |
|
COSM1068499 CA359702680 rs1407054365 |
487 | M>V | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
CA359702661 rs1181127349 |
489 | S>R | No |
ClinGen gnomAD |
|
CA118283635 COSM325476 rs920701498 |
492 | R>K | lung [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
TCGA novel | 501 | Y>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs972121549 CA118283634 |
501 | Y>F | No |
ClinGen TOPMed |
|
rs778847104 CA3259276 |
501 | Y>H | No |
ClinGen ExAC gnomAD |
|
rs1485989336 CA359702567 |
503 | I>V | No |
ClinGen Ensembl |
|
COSM1543883 CA359702535 rs180790607 CA359702536 |
508 | V>L | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD NCI-TCGA |
rs1332144615 CA359702531 |
509 | G>S | No |
ClinGen gnomAD |
|
CA118283631 rs539896753 |
510 | K>* | No |
ClinGen 1000Genomes |
|
rs780273858 CA3259273 |
510 | K>N | No |
ClinGen ExAC gnomAD |
|
rs772669067 | 512 | M>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No | NCI-TCGA |
CA3259272 rs755909703 |
512 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 515 | I>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359702471 rs1330020304 |
517 | H>D | No |
ClinGen TOPMed |
|
TCGA novel | 518 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359702452 rs1459697551 |
520 | A>T | No |
ClinGen gnomAD |
|
CA118283629 rs992806251 |
524 | T>I | No |
ClinGen TOPMed gnomAD |
|
CA359702414 rs1173056773 |
526 | S>P | No |
ClinGen gnomAD |
|
rs751481175 CA3259267 |
528 | K>N | No |
ClinGen ExAC TOPMed gnomAD |
|
rs763513109 CA3259266 |
531 | K>R | No |
ClinGen ExAC gnomAD |
|
rs1489714019 CA359702368 |
532 | L>V | No |
ClinGen TOPMed gnomAD |
|
rs752317912 CA3259264 |
535 | G>V | No |
ClinGen ExAC |
|
rs1490887803 CA359702343 |
536 | S>A | No |
ClinGen TOPMed |
|
rs1395732901 CA359706000 |
542 | C>F | No |
ClinGen gnomAD |
|
TCGA novel | 545 | T>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA118278940 rs868454030 |
549 | R>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
CA3259241 rs767873173 |
552 | S>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
CA359705931 rs1445787418 |
554 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
TCGA novel | 559 | C>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 564 | L>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359705850 rs1183544872 |
566 | V>G | No |
ClinGen TOPMed |
|
rs1359790932 CA359705845 |
567 | D>G | No |
ClinGen gnomAD |
|
TCGA novel | 568 | N>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359705834 rs1173161974 |
568 | N>K | No |
ClinGen gnomAD |
|
rs1415664571 CA359705829 |
569 | F>S | No |
ClinGen TOPMed |
|
rs1433400858 CA359705821 |
570 | N>S | No |
ClinGen TOPMed gnomAD |
|
rs1433400858 CA359705822 |
570 | N>T | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 577 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359705758 rs1579766374 |
579 | M>V | No |
ClinGen Ensembl |
|
rs1248907862 CA359705741 |
581 | R>K | No |
ClinGen TOPMed gnomAD |
|
rs1248907862 CA359705740 |
581 | R>T | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 585 | T>A | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs775623605 CA3259236 |
585 | T>R | No |
ClinGen ExAC gnomAD |
|
rs1166669677 CA359705612 COSM738663 |
592 | D>G | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
CA359704848 rs1197541186 |
595 | G>E | No |
ClinGen gnomAD |
|
CA118278390 rs536949413 |
596 | K>T | No |
ClinGen Ensembl |
|
rs765435039 CA3259216 |
598 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs765435039 CA359704802 |
598 | N>T | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 599 | S>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
COSM2155254 CA359704792 rs1382153041 |
599 | S>P | Variant assessed as Somatic; 0.0 impact. central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
rs990318984 CA118278389 |
601 | L>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
TCGA novel | 601 | L>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1458754124 CA359704701 |
605 | F>L | No |
ClinGen gnomAD |
|
CA3259214 rs771250280 |
607 | K>E | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 608 | D>E | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359704668 rs1336099651 |
608 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
TCGA novel | 609 | L>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs746848620 CA3259213 |
612 | G>D | No |
ClinGen ExAC gnomAD |
|
CA359704596 rs1478627115 |
615 | N>D | No |
ClinGen gnomAD |
|
RCV001264686 rs200841444 TCGA novel CA118278388 |
615 | N>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ClinVar TOPMed dbSNP gnomAD NCI-TCGA |
rs773048866 CA3259212 |
615 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs771707286 CA3259211 |
616 | N>S | No |
ClinGen ExAC gnomAD |
|
rs748122704 CA3259210 |
617 | Q>R | No |
ClinGen ExAC TOPMed gnomAD |
|
CA359704571 rs1221163641 |
618 | E>D | No |
ClinGen TOPMed |
|
TCGA novel | 618 | E>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1283597786 CA359704576 |
618 | E>Q | No |
ClinGen TOPMed |
|
CA359704568 rs1467840745 |
619 | N>D | No |
ClinGen gnomAD |
|
rs778783214 CA3259209 |
619 | N>T | No |
ClinGen ExAC gnomAD |
|
rs748765112 CA3259207 |
622 | L>F | No |
ClinGen ExAC gnomAD |
|
CA3259206 rs779746846 |
624 | Q>R | No |
ClinGen ExAC gnomAD |
|
rs934319953 CA118278387 |
628 | H>Y | No |
ClinGen Ensembl |
|
rs555626997 CA118278386 |
630 | R>S | No |
ClinGen Ensembl |
|
rs756115935 CA359704467 |
633 | V>L | No |
ClinGen TOPMed |
|
rs756115935 CA118278385 |
633 | V>M | No |
ClinGen TOPMed |
|
CA3259204 rs749983867 |
635 | A>T | No |
ClinGen ExAC gnomAD |
|
CA359704438 rs1394179231 |
637 | A>V | No |
ClinGen gnomAD |
|
CA3259203 rs764520573 |
639 | I>M | No |
ClinGen ExAC gnomAD |
|
rs982964789 CA118278384 |
639 | I>T | No |
ClinGen TOPMed |
|
rs1466860200 CA359704425 |
640 | N>D | No |
ClinGen gnomAD |
|
CA359704422 rs1446280490 |
640 | N>S | No |
ClinGen TOPMed |
|
rs1561079455 CA359704405 |
642 | P>L | No |
ClinGen Ensembl |
|
rs765821482 CA3259200 |
644 | M>T | No |
ClinGen ExAC gnomAD |
|
CA359704384 rs1479541880 |
645 | T>I | No |
ClinGen TOPMed |
|
TCGA novel | 648 | N>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs759733460 CA3259199 |
649 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs776850213 CA3259198 |
650 | T>A | No |
ClinGen ExAC gnomAD |
|
CA3259197 rs766768359 |
650 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3259194 rs771934361 |
651 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs768576555 CA3259191 |
652 | S>C | No |
ClinGen ExAC TOPMed gnomAD |
|
rs768576555 CA3259192 |
652 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
CA359704345 rs1195261110 |
653 | T>S | No |
ClinGen gnomAD |
|
CA3259190 rs748853027 |
654 | T>M | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs1579763291 CA359704334 |
655 | T>P | No |
ClinGen Ensembl |
|
CA359704318 rs1293402226 |
657 | T>I | No |
ClinGen gnomAD |
|
CA359704322 rs748070273 |
657 | T>P | No |
ClinGen ExAC TOPMed gnomAD |
|
CA359704307 COSM738670 rs1221257807 |
659 | R>L | lung Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
CA359704311 rs745561895 |
659 | R>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs143224211 CA3259186 |
661 | R>K | No |
ClinGen ESP ExAC gnomAD |
|
CA359704286 rs1317033746 |
662 | T>I | No |
ClinGen TOPMed |
|
TCGA novel | 663 | Q>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 667 | V>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1028285190 CA118278379 |
667 | V>M | No |
ClinGen Ensembl |
|
rs1433945121 CA359704245 |
669 | T>A | No |
ClinGen gnomAD |
|
rs1232128294 CA359704236 |
671 | T>A | No |
ClinGen gnomAD |
|
CA359704232 rs1489927262 |
671 | T>I | No |
ClinGen TOPMed |
|
rs1232128294 CA359704237 |
671 | T>P | No |
ClinGen gnomAD |
|
rs766487587 CA3259180 COSM738672 |
672 | S>R | lung [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
rs750680736 CA3259178 |
673 | L>R | No |
ClinGen ExAC gnomAD |
|
CA118278378 rs138171983 |
674 | S>F | No |
ClinGen ESP |
|
CA3259176 rs761735262 |
676 | S>R | No |
ClinGen ExAC gnomAD |
|
CA359704198 rs1242721204 |
677 | N>D | No |
ClinGen gnomAD |
|
TCGA novel | 677 | N>K | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1199032164 CA359704196 |
677 | N>S | No |
ClinGen TOPMed |
|
rs200794598 CA359704184 |
679 | H>P | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs762879493 CA359704182 CA3259174 |
679 | H>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3259175 rs200794598 |
679 | H>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs1579763121 CA359704180 |
680 | S>P | No |
ClinGen Ensembl |
|
rs1439561079 CA359704171 |
681 | P>R | No |
ClinGen gnomAD |
|
CA359704166 rs769364301 |
682 | S>N | No |
ClinGen ExAC gnomAD |
|
rs769364301 CA3259171 |
682 | S>T | No |
ClinGen ExAC gnomAD |
|
rs1160351107 CA359704152 |
684 | S>I | No |
ClinGen gnomAD |
|
CA359704157 rs1373506537 |
684 | S>R | No |
ClinGen gnomAD |
|
CA359704145 rs1165891593 |
685 | T>I | No |
ClinGen TOPMed |
|
CA3259169 rs780942201 |
685 | T>P | No |
ClinGen ExAC TOPMed gnomAD |
|
CA359704135 rs1156665509 |
687 | T>A | No |
ClinGen gnomAD |
|
rs748584173 CA3259168 |
687 | T>I | No |
ClinGen ExAC gnomAD |
|
CA359704136 rs1156665509 |
687 | T>P | No |
ClinGen gnomAD |
|
CA359704133 rs748584173 |
687 | T>S | No |
ClinGen ExAC gnomAD |
|
CA3259166 rs779436110 |
688 | P>S | No |
ClinGen ExAC gnomAD |
|
CA359704123 rs1293979204 |
689 | Q>P | No |
ClinGen gnomAD |
|
CA359704122 rs1293979204 |
689 | Q>R | No |
ClinGen gnomAD |
|
TCGA novel | 689 | Q>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs780377541 CA3259163 |
691 | S>A | No |
ClinGen ExAC gnomAD |
|
rs1219412264 CA359704106 |
692 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
rs377359279 CA3259162 |
693 | I>V | No |
ClinGen ESP ExAC gnomAD |
|
rs750463999 CA118278376 |
695 | S>P | No |
ClinGen ExAC TOPMed gnomAD |
|
rs767837343 CA3259160 |
698 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs1352995652 CA359704057 |
700 | T>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
rs1246561442 CA359704036 |
704 | C>R | No |
ClinGen TOPMed |
|
CA118278375 rs887218056 |
705 | S>G | No |
ClinGen TOPMed |
|
TCGA novel | 706 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 706 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1406904527 CA359704010 |
708 | V>I | No |
ClinGen gnomAD |
|
TCGA novel | 709 | Q>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1221455779 CA359703990 |
710 | S>R | No |
ClinGen TOPMed |
|
TCGA novel | 711 | P>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA3259157 rs372778760 |
711 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs775543627 CA3259155 COSM738675 |
714 | A>S | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
rs1188360272 CA359703968 |
714 | A>V | No |
ClinGen TOPMed gnomAD |
|
rs1242068538 CA359703963 |
715 | R>P | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
COSM325474 rs1242068538 CA359703964 |
715 | R>Q | lung Variant assessed as Somatic; 0.0 impact. large_intestine [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
CA359703952 rs1579762918 |
717 | F>S | No |
ClinGen Ensembl |
|
CA118278372 rs778734363 |
721 | S>C | No |
ClinGen Ensembl |
|
rs905412259 CA118278373 |
721 | S>T | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 723 | T>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1579762890 CA359703916 |
723 | T>P | No |
ClinGen Ensembl |
|
rs1383923470 CA359703905 |
725 | S>T | No |
ClinGen TOPMed |
|
rs1039430806 CA118278370 |
726 | Q>H | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 726 | Q>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1438575744 CA359703879 |
729 | L>F | No |
ClinGen gnomAD |
|
rs1394920889 CA359703862 |
731 | Q>R | No |
ClinGen gnomAD |
|
rs1325047367 CA359703856 |
732 | Q>* | No |
ClinGen gnomAD |
|
CA118278369 rs371481425 |
733 | Q>* | No |
ClinGen Ensembl |
|
CA3259150 rs772962018 |
734 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs1461055722 CA359703841 |
734 | P>S | No |
ClinGen gnomAD |
|
CA3259149 rs769165114 |
735 | Q>R | No |
ClinGen ExAC gnomAD |
|
CA359703810 rs1579762790 |
738 | V>G | No |
ClinGen Ensembl |
|
CA359703815 rs1372043768 |
738 | V>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
CA359703804 rs1418945597 |
739 | Q>P | No |
ClinGen gnomAD |
|
rs1452689448 CA359703800 |
740 | Q>E | No |
ClinGen TOPMed |
|
CA359703788 rs1317154905 |
741 | S>Y | No |
ClinGen TOPMed |
|
CA359703772 rs1466817263 |
744 | P>S | No |
ClinGen gnomAD |
|
CA359703774 rs1466817263 |
744 | P>T | No |
ClinGen gnomAD |
|
CA359703755 rs1306386314 |
746 | T>I | No |
ClinGen TOPMed gnomAD |
|
rs751800894 CA3259142 |
748 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3259141 rs764274304 |
750 | Q>E | No |
ClinGen ExAC gnomAD |
|
rs1052640717 CA118278367 |
751 | P>L | No |
ClinGen gnomAD |
|
rs1579762727 CA359703722 |
752 | S>P | No |
ClinGen Ensembl |
|
CA118278366 rs934392482 RCV001311648 |
752 | S>Y | No |
ClinGen ClinVar Ensembl dbSNP |
|
rs367708007 COSM330488 CA118278365 |
753 | P>L | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
TCGA novel | 754 | Q>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359703689 rs1462729387 |
757 | T>A | No |
ClinGen TOPMed gnomAD |
|
CA359703682 rs1353996566 |
758 | P>S | No |
ClinGen gnomAD |
|
CA3259138 rs544168876 |
762 | T>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA gnomAD |
rs1437053801 CA359703649 |
763 | P>Q | No |
ClinGen gnomAD |
|
CA3259136 rs776567935 |
766 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
TCGA novel | 768 | H>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA3259133 rs773048153 |
769 | K>R | No |
ClinGen ExAC gnomAD |
|
CA3259132 rs369380065 |
770 | S>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
CA118278360 COSM320770 rs975750493 |
772 | Q>* | lung [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
CA118278361 rs975750493 |
772 | Q>E | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 772 | Q>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 773 | A>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1232040161 CA359703580 |
773 | A>V | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
TCGA novel | 775 | H>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359703557 rs1307516754 |
777 | T>A | No |
ClinGen gnomAD |
|
CA3259127 rs781686163 |
781 | R>G | No |
ClinGen ExAC gnomAD |
|
CA118278358 rs767523812 |
783 | V>L | No |
ClinGen Ensembl |
|
rs752908921 CA3259122 |
791 | P>S | No |
ClinGen ExAC gnomAD |
|
rs140758934 CA3259121 |
792 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
TCGA novel | 796 | E>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359703442 rs1212588181 |
796 | E>Q | No |
ClinGen TOPMed |
|
TCGA novel | 797 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359703427 rs1324470245 |
798 | S>Y | No |
ClinGen TOPMed |
|
rs766397326 CA3259118 |
799 | T>I | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 804 | P>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 804 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1035068089 CA118278355 |
807 | T>A | No |
ClinGen TOPMed gnomAD |
|
rs761374276 CA3259114 |
808 | V>A | No |
ClinGen ExAC gnomAD |
|
rs767078014 CA3259115 |
808 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
CA118278354 rs767078014 |
808 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1422487971 CA359703365 |
809 | G>R | No |
ClinGen TOPMed |
|
rs727503956 CA359703360 |
810 | E>K | No |
ClinGen gnomAD |
|
rs727503956 CA234108 RCV000153348 |
810 | E>Q | No |
ClinGen ClinVar dbSNP gnomAD |
|
rs967232218 CA359703349 |
811 | S>F | No |
ClinGen TOPMed gnomAD |
|
rs967232218 CA118278353 |
811 | S>Y | No |
ClinGen TOPMed gnomAD |
|
rs777158203 COSM1437701 CA3259110 |
813 | A>D | large_intestine Variant assessed as Somatic; 4.683e-05 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
CA359703342 rs759920350 |
813 | A>S | No |
ClinGen ExAC gnomAD |
|
rs759920350 CA3259111 |
813 | A>T | No |
ClinGen ExAC gnomAD |
|
RCV001091908 rs777158203 CA359703340 |
813 | A>V | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
CA118278352 rs1003463768 |
815 | I>T | No |
ClinGen Ensembl |
|
CA118278351 rs998527315 |
817 | Q>P | No |
ClinGen TOPMed gnomAD |
|
rs777848314 CA3259107 |
819 | V>G | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs1197215604 COSM3410293 CA359703308 |
819 | V>M | central_nervous_system [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
rs1362460579 CA359703299 |
820 | T>R | No |
ClinGen gnomAD |
|
CA359703289 rs1579762392 |
822 | V>G | No |
ClinGen Ensembl |
|
rs1224402504 CA359703282 |
823 | P>R | No |
ClinGen TOPMed |
|
CA359703271 rs1185166415 |
825 | T>K | No |
ClinGen gnomAD |
|
rs1262369935 CA359703266 |
826 | G>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
rs1204287489 CA359703265 |
826 | G>D | No |
ClinGen gnomAD |
|
rs1484753978 CA359703242 |
830 | G>R | No |
ClinGen gnomAD |
|
CA3259099 rs756131996 |
831 | G>D | No |
ClinGen ExAC gnomAD |
|
CA359703234 rs756131996 |
831 | G>V | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 832 | R>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs267600644 COSM738682 CA359703227 |
832 | R>S | lung Variant assessed as Somatic; 0.0 impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
CA3259097 rs767166082 |
833 | S>R | No |
ClinGen ExAC gnomAD |
|
rs751215219 CA3259095 |
835 | V>D | No |
ClinGen ExAC gnomAD |
|
CA3259093 COSM2157580 rs759882440 |
838 | R>C | central_nervous_system [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
rs1328423751 COSM364660 CA359703188 |
839 | V>F | lung [Cosmic] | No |
ClinGen cosmic curated gnomAD |
CA359703190 rs1328423751 |
839 | V>I | No |
ClinGen gnomAD |
|
rs1579762301 CA359703182 |
840 | T>P | No |
ClinGen Ensembl |
|
rs1393295376 CA359703176 |
841 | L>F | No |
ClinGen gnomAD |
|
rs776970041 CA3259092 |
841 | L>P | No |
ClinGen ExAC gnomAD |
|
CA118278348 rs888196323 |
842 | F>V | No |
ClinGen TOPMed gnomAD |
|
rs1046832984 CA118278347 |
843 | R>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
CA359703165 rs1373191177 |
843 | R>Q | No |
ClinGen gnomAD |
|
rs1201193034 CA359703159 |
844 | Q>P | No |
ClinGen TOPMed |
|
CA3259091 rs771230431 |
845 | M>T | No |
ClinGen ExAC gnomAD |
|
CA359703141 rs1477444033 |
846 | S>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
CA3259090 rs572698864 |
847 | S>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
TCGA novel | 847 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359703127 rs1561078885 |
849 | A>S | No |
ClinGen Ensembl |
|
VAR_085693 | 851 | P>A | found in a patient with sinus bradychardia; unknown pathological significance; affects channel properties as it results in a negative shift in the threshold voltage of activation and slower activation kinetics compared to the wild-type [UniProt] | No | UniProt |
rs1194036783 CA359703116 |
851 | P>S | No |
ClinGen gnomAD |
|
CA359703109 rs1272817813 |
852 | P>A | No |
ClinGen gnomAD |
|
CA3259087 rs201368368 |
852 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA3259086 rs201368368 |
852 | P>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA359703101 rs140186173 CA3259084 |
853 | N>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA118278346 rs534013981 COSM2157080 |
854 | R>* | Variant assessed as Somatic; impact. central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
rs1060500094 COSM3736668 CA359703098 |
854 | R>Q | Variant assessed as Somatic; 0.0 impact. skin [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
rs755932633 CA3259082 |
855 | G>V | No |
ClinGen ExAC gnomAD |
|
rs745821900 CA3259081 |
856 | V>I | No |
ClinGen ExAC gnomAD |
|
rs1321143940 CA359703082 |
857 | P>L | No |
ClinGen gnomAD |
|
CA359703078 rs1411355374 |
858 | P>Q | No |
ClinGen gnomAD |
|
rs1166883194 CA359703064 |
860 | P>L | No |
ClinGen gnomAD |
|
CA359703067 rs1396579079 |
860 | P>S | No |
ClinGen TOPMed gnomAD |
|
CA359703069 rs1396579079 |
860 | P>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
CA359703063 rs756753787 |
861 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
CA359703062 rs756753787 |
861 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
COSM317446 CA3259079 rs756753787 |
861 | P>T | lung [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
CA3259078 rs751073592 |
862 | P>L | No |
ClinGen ExAC gnomAD |
|
rs751073592 CA359703055 |
862 | P>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
TCGA novel | 863 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 863 | P>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs377177102 CA3259075 |
864 | A>T | No |
ClinGen ESP ExAC gnomAD |
|
TCGA novel | 866 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 866 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1207082922 CA359703018 |
869 | R>G | No |
ClinGen gnomAD |
|
rs372807250 CA3259074 |
869 | R>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
CA3259073 rs199774910 |
872 | S>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
rs1251251598 CA359702992 |
873 | S>P | No |
ClinGen gnomAD |
|
rs1340599360 CA359702986 |
874 | V>L | No |
ClinGen gnomAD |
|
CA118278344 rs948318133 |
875 | L>F | No |
ClinGen TOPMed |
|
COSM482855 rs773757463 CA3259072 |
878 | D>E | kidney [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
CA3259069 rs774478577 |
879 | P>L | No |
ClinGen ExAC gnomAD |
|
rs761866949 CA3259071 |
879 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs56377228 CA3259067 COSM3342939 |
881 | A>T | Variant assessed as Somatic; 0.0 impact. pancreas [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
TCGA novel | 884 | P>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 884 | P>T | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA359702915 rs1335989876 |
885 | R>* | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
CA3259066 rs775806199 |
885 | R>L | No |
ClinGen ExAC gnomAD |
|
rs775806199 CA118278343 |
885 | R>Q | Variant assessed as Somatic; impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs200667279 CA118278342 |
886 | F>V | No |
ClinGen 1000Genomes |
|
rs757124569 CA3259065 |
887 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
CA359702904 rs1283434459 |
887 | A>V | No |
ClinGen gnomAD |
|
TCGA novel | 890 | L>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 891 | L>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
2 associated diseases with O60741
[MIM: 615871]: Developmental and epileptic encephalopathy 24 (DEE24)
A disease characterized by early-onset seizures, intellectual disability of varying degrees, and behavioral disturbances or autistic features in most individuals. . Note=The disease is caused by variants affecting the gene represented in this entry.
[MIM: 618482]: Generalized epilepsy with febrile seizures plus 10 (GEFSP10)
An autosomal dominant neurologic disorder with incomplete penetrance, characterized by variable types of seizures including absence, tonic-clonic, febrile, focal, and eyelid myoclonia. Some patients have normal neurologic development. Others have mild-to-moderate intellectual disability or autism spectrum disorder. . Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- A disease characterized by early-onset seizures, intellectual disability of varying degrees, and behavioral disturbances or autistic features in most individuals. . Note=The disease is caused by variants affecting the gene represented in this entry.
- An autosomal dominant neurologic disorder with incomplete penetrance, characterized by variable types of seizures including absence, tonic-clonic, febrile, focal, and eyelid myoclonia. Some patients have normal neurologic development. Others have mild-to-moderate intellectual disability or autism spectrum disorder. . Note=The disease is caused by variants affecting the gene represented in this entry.
4 regional properties for O60741
7 GO annotations of cellular component
Name | Definition |
---|---|
axon | The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter. |
dendrite | A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body. |
glutamatergic synapse | A synapse that uses glutamate as a neurotransmitter. |
HCN channel complex | A cation ion channel with a preference for K+ over Na+ ions, which is activated by membrane hyperpolarization, and consists of a tetramer of HCN family members. Some members of this family (HCN1, HCN2 and HCN4) are also activated when cAMP binds to their cyclic nucleotide binding domain (CNBD). Channel complexes of this family play an important role in the control of pacemaker activity in the heart. |
plasma membrane | The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins. |
postsynaptic membrane | A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters cross the synaptic cleft and transmit the signal to the postsynaptic membrane. |
presynaptic active zone membrane | The membrane portion of the presynaptic active zone; it is the site where docking and fusion of synaptic vesicles occurs for the release of neurotransmitters. |
8 GO annotations of molecular function
Name | Definition |
---|---|
cAMP binding | Binding to cAMP, the nucleotide cyclic AMP (adenosine 3',5'-cyclophosphate). |
identical protein binding | Binding to an identical protein or proteins. |
intracellular cAMP-activated cation channel activity involved in regulation of presynaptic membrane potential | Enables the transmembrane transfer of a cation by a channel that opens when intracellular cAMP has been bound by the channel complex or one of its constituent parts, to regulate the presynaptic membrane potential. |
intracellularly cAMP-activated cation channel activity | Enables the transmembrane transfer of a cation by a channel that opens when intracellular cAMP has been bound by the channel complex or one of its constituent parts. |
potassium channel activity | Enables the facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. |
voltage-gated monoatomic cation channel activity | Enables the transmembrane transfer of a cation by a voltage-gated channel. A cation is a positively charged ion. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. |
voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. |
voltage-gated sodium channel activity | Enables the transmembrane transfer of a sodium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. |
10 GO annotations of biological process
Name | Definition |
---|---|
apical protein localization | Any process in which a protein is transported to, or maintained in, apical regions of the cell. |
cellular response to cAMP | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus. |
general adaptation syndrome, behavioral process | The set of behavioral processes that occur as part of the general adaptation syndrome, the response of the body to a strong, stressful stimulus. |
neuronal action potential | An action potential that occurs in a neuron. |
potassium ion transmembrane transport | A process in which a potassium ion is transported from one side of a membrane to the other. |
protein homotetramerization | The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits. |
regulation of membrane depolarization | Any process that modulates the rate, frequency or extent of membrane depolarization. Membrane depolarization is the process in which membrane potential changes in the depolarizing direction from the resting potential, usually from negative to positive. |
regulation of membrane potential | Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane. |
retinal cone cell development | Development of a cone cell, one of the sensory cells in the eye that reacts to the presence of light. Cone cells contain the photopigment iodopsin or cyanopsin and are responsible for photopic (daylight) vision. |
sodium ion transmembrane transport | A process in which a sodium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
18 homologous proteins in AiPD
UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
---|---|---|---|---|
Q9P1Z3 | HCN3 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 | Homo sapiens (Human) | SS |
Q9UL51 | HCN2 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 | Homo sapiens (Human) | SS |
Q9Y3Q4 | HCN4 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | Homo sapiens (Human) | EV |
O88705 | Hcn3 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 | Mus musculus (Mouse) | SS |
O70507 | Hcn4 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | Mus musculus (Mouse) | SS |
O88703 | Hcn2 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 | Mus musculus (Mouse) | EV |
O88704 | Hcn1 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 | Mus musculus (Mouse) | SS |
Q9JKA9 | Hcn2 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 | Rattus norvegicus (Rat) | SS |
Q9JKA7 | Hcn4 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 | Rattus norvegicus (Rat) | SS |
Q9JKA8 | Hcn3 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 | Rattus norvegicus (Rat) | SS |
Q9JKB0 | Hcn1 | Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 | Rattus norvegicus (Rat) | SS |
Q6K3T2 | Os02g0245800 | Potassium channel KAT1 | Oryza sativa subsp japonica (Rice) | PR |
A2ZX97 | Os01g0718700 | Potassium channel KAT6 | Oryza sativa subsp japonica (Rice) | PR |
Q9SKD7 | CNGC3 | Probable cyclic nucleotide-gated ion channel 3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q9LDR2 | CNGC19 | Putative cyclic nucleotide-gated ion channel 19 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q9SU64 | CNGC16 | Probable cyclic nucleotide-gated ion channel 16 | Arabidopsis thaliana (Mouse-ear cress) | PR |
P92960 | ATHB-4 | Potassium channel KAT3 | Arabidopsis thaliana (Mouse-ear cress) | PR |
Q39128 | KAT1 | Potassium channel KAT1 | Arabidopsis thaliana (Mouse-ear cress) | PR |
10 | 20 | 30 | 40 | 50 | 60 |
MEGGGKPNSS | SNSRDDGNSV | FPAKASATGA | GPAAAEKRLG | TPPGGGGAGA | KEHGNSVCFK |
70 | 80 | 90 | 100 | 110 | 120 |
VDGGGGGGGG | GGGGEEPAGG | FEDAEGPRRQ | YGFMQRQFTS | MLQPGVNKFS | LRMFGSQKAV |
130 | 140 | 150 | 160 | 170 | 180 |
EKEQERVKTA | GFWIIHPYSD | FRFYWDLIML | IMMVGNLVII | PVGITFFTEQ | TTTPWIIFNV |
190 | 200 | 210 | 220 | 230 | 240 |
ASDTVFLLDL | IMNFRTGTVN | EDSSEIILDP | KVIKMNYLKS | WFVVDFISSI | PVDYIFLIVE |
250 | 260 | 270 | 280 | 290 | 300 |
KGMDSEVYKT | ARALRIVRFT | KILSLLRLLR | LSRLIRYIHQ | WEEIFHMTYD | LASAVVRIFN |
310 | 320 | 330 | 340 | 350 | 360 |
LIGMMLLLCH | WDGCLQFLVP | LLQDFPPDCW | VSLNEMVNDS | WGKQYSYALF | KAMSHMLCIG |
370 | 380 | 390 | 400 | 410 | 420 |
YGAQAPVSMS | DLWITMLSMI | VGATCYAMFV | GHATALIQSL | DSSRRQYQEK | YKQVEQYMSF |
430 | 440 | 450 | 460 | 470 | 480 |
HKLPADMRQK | IHDYYEHRYQ | GKIFDEENIL | NELNDPLREE | IVNFNCRKLV | ATMPLFANAD |
490 | 500 | 510 | 520 | 530 | 540 |
PNFVTAMLSK | LRFEVFQPGD | YIIREGAVGK | KMYFIQHGVA | GVITKSSKEM | KLTDGSYFGE |
550 | 560 | 570 | 580 | 590 | 600 |
ICLLTKGRRT | ASVRADTYCR | LYSLSVDNFN | EVLEEYPMMR | RAFETVAIDR | LDRIGKKNSI |
610 | 620 | 630 | 640 | 650 | 660 |
LLQKFQKDLN | TGVFNNQENE | ILKQIVKHDR | EMVQAIAPIN | YPQMTTLNST | SSTTTPTSRM |
670 | 680 | 690 | 700 | 710 | 720 |
RTQSPPVYTA | TSLSHSNLHS | PSPSTQTPQP | SAILSPCSYT | TAVCSPPVQS | PLAARTFHYA |
730 | 740 | 750 | 760 | 770 | 780 |
SPTASQLSLM | QQQPQQQVQQ | SQPPQTQPQQ | PSPQPQTPGS | STPKNEVHKS | TQALHNTNLT |
790 | 800 | 810 | 820 | 830 | 840 |
REVRPLSASQ | PSLPHEVSTL | ISRPHPTVGE | SLASIPQPVT | AVPGTGLQAG | GRSTVPQRVT |
850 | 860 | 870 | 880 | ||
LFRQMSSGAI | PPNRGVPPAP | PPPAAALPRE | SSSVLNTDPD | AEKPRFASNL |