O00423
Gene name |
EML1 (EMAP1, EMAPL, EMAPL1) |
Protein name |
Echinoderm microtubule-associated protein-like 1 |
Names |
EMAP-1, HuEMAP-1 |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:2009 |
EC number |
|
Protein Class |
|

Descriptions
The autoinhibited protein was predicted that may have potential autoinhibitory elements via cis-regPred.
Autoinhibitory domains (AIDs)
Target domain |
|
Relief mechanism |
|
Assay |
cis-regPred |
Accessory elements
No accessory elements
Autoinhibited structure

Activated structure

2 structures for O00423
Entry ID | Method | Resolution | Chain | Position | Source |
---|---|---|---|---|---|
4CI8 | X-ray | 260 A | A/B | 167-815 | PDB |
AF-O00423-F1 | Predicted | AlphaFoldDB |
537 variants for O00423
Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
---|---|---|---|---|---|
RCV000240860 rs886037935 CA10586384 |
138 | R>* | Band heterotopia of brain [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
VAR_071075 CA10586386 RCV000240859 rs886037937 |
225 | W>R | Band heterotopia of brain BH [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
CA10586385 VAR_071076 rs886037936 RCV000240858 |
243 | T>A | Band heterotopia of brain BH; decreased microtubule-binding [ClinVar, UniProt] | Yes |
ClinGen ClinVar UniProt Ensembl dbSNP |
CA390961293 rs1555404109 RCV000660884 |
523 | R>* | Band heterotopia of brain [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
VAR_081119 | 523 | R>del | BH [UniProt] | Yes | UniProt |
RCV001329250 rs2060118585 |
633 | R>* | Band heterotopia of brain [ClinVar] | Yes |
ClinVar dbSNP |
rs1412026126 CA390953196 |
2 | E>Q | No |
ClinGen TOPMed |
|
CA390953207 rs1188512269 |
3 | D>G | No |
ClinGen TOPMed |
|
rs866090534 CA266705190 |
4 | G>S | No |
ClinGen Ensembl |
|
CA390953229 rs1262642665 |
6 | S>F | No |
ClinGen TOPMed |
|
rs752433188 CA7342165 |
7 | S>T | No |
ClinGen ExAC gnomAD |
|
CA390953260 rs1490832929 |
10 | S>R | No |
ClinGen TOPMed |
|
rs1265939463 CA390953262 |
11 | L>V | No |
ClinGen TOPMed |
|
CA390953287 rs1319705298 |
14 | T>M | No |
ClinGen TOPMed |
|
rs1408837859 CA390953288 |
15 | S>T | No |
ClinGen gnomAD |
|
CA390953328 rs1311296449 |
21 | C>R | No |
ClinGen gnomAD |
|
CA7342198 rs779344866 |
23 | D>G | No |
ClinGen ExAC gnomAD |
|
rs748407253 CA7342199 |
24 | D>V | No |
ClinGen ExAC gnomAD |
|
rs772128160 CA7342200 |
26 | A>T | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs1484904009 CA390961868 |
26 | A>V | No |
ClinGen gnomAD |
|
rs1231505640 CA390961905 |
29 | A>T | No |
ClinGen TOPMed |
|
TCGA novel | 32 | M>I | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA7342201 rs773366302 |
32 | M>V | No |
ClinGen ExAC gnomAD |
|
rs1566897568 CA390961968 |
33 | E>K | No |
ClinGen Ensembl |
|
CA390961980 rs1366436485 |
34 | V>M | No |
ClinGen TOPMed |
|
rs1475233729 CA390961999 |
36 | D>N | No |
ClinGen gnomAD |
|
rs760634692 CA7342202 |
37 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs772696242 CA7342203 COSM199325 |
37 | R>H | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
rs376349469 CA7342204 |
38 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA390962040 rs1162964154 |
39 | A>V | No |
ClinGen gnomAD |
|
TCGA novel | 44 | R>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA7342205 rs780402565 |
47 | M>L | No |
ClinGen ExAC gnomAD |
|
CA390962240 rs780402565 |
47 | M>V | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 51 | D>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs768931630 CA266751176 |
52 | I>L | No |
ClinGen Ensembl |
|
CA390962284 rs1296864940 |
52 | I>M | No |
ClinGen gnomAD |
|
rs1435242505 CA390962291 |
53 | Q>H | No |
ClinGen TOPMed |
|
CA7342208 rs567747811 |
56 | K>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA7342209 rs767034070 |
57 | S>A | No |
ClinGen ExAC gnomAD |
|
rs777004379 CA7342210 |
58 | A>D | No |
ClinGen ExAC TOPMed gnomAD |
|
CA266751202 rs777004379 |
58 | A>G | No |
ClinGen ExAC TOPMed gnomAD |
|
CA390962318 rs1229980680 |
58 | A>S | No |
ClinGen gnomAD |
|
CA7342211 rs755662067 |
59 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
rs762605264 CA266751216 |
62 | V>M | No |
ClinGen TOPMed |
|
CA7342212 rs780763756 |
64 | R>Q | No |
ClinGen ExAC gnomAD |
|
CA266751227 rs981038918 COSM3419618 |
64 | R>W | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA TOPMed gnomAD |
CA390962353 rs1210669175 |
65 | R>Q | No |
ClinGen TOPMed gnomAD |
|
rs754391824 CA7342213 |
65 | R>W | No |
ClinGen ExAC gnomAD |
|
rs1595378783 CA390962356 |
66 | L>V | No |
ClinGen Ensembl |
|
rs141871132 CA390962369 |
68 | I>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs141871132 CA7342215 |
68 | I>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA390962394 rs1595378818 |
71 | E>V | No |
ClinGen Ensembl |
|
CA390962402 rs1381819014 |
72 | Q>R | No |
ClinGen gnomAD |
|
rs777830374 CA7342218 |
74 | A>S | No |
ClinGen ExAC gnomAD |
|
CA7342220 rs770989241 |
75 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
rs909654752 CA266751303 |
76 | L>R | No |
ClinGen Ensembl |
|
rs775475932 CA7342221 |
78 | R>G | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 80 | G>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs943791323 CA390962485 |
80 | G>E | No |
ClinGen TOPMed |
|
rs943791323 CA266751312 |
80 | G>V | No |
ClinGen TOPMed |
|
rs1393358557 CA390953359 |
84 | A>V | No |
ClinGen TOPMed |
|
CA7342253 rs369479741 |
85 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
TCGA novel | 86 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA390953375 rs1363098344 |
87 | L>P | No |
ClinGen TOPMed gnomAD |
|
rs757497819 CA7342254 |
88 | M>V | No |
ClinGen ExAC gnomAD |
|
CA7342255 rs781357485 |
89 | Q>K | No |
ClinGen ExAC TOPMed gnomAD |
|
CA390953395 rs1332029072 |
90 | T>N | No |
ClinGen gnomAD |
|
CA266713877 rs201808030 |
92 | P>L | No |
ClinGen Ensembl |
|
COSM173887 CA7342257 rs756132735 |
96 | T>M | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
CA7342259 rs193255816 |
98 | N>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA390953458 rs1488503869 COSM1371945 |
100 | G>D | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
CA266713900 rs866767258 |
100 | G>S | No |
ClinGen Ensembl |
|
rs773164346 CA7342261 |
108 | T>I | No |
ClinGen ExAC gnomAD |
|
CA7342262 rs141631682 RCV000879386 |
109 | G>D | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs1399107214 CA390953552 |
110 | S>C | No |
ClinGen gnomAD |
|
rs1311562691 CA390953571 |
112 | P>Q | No |
ClinGen gnomAD |
|
rs1355437115 CA390953583 |
113 | S>C | No |
ClinGen TOPMed gnomAD |
|
CA390953581 rs1355437115 |
113 | S>Y | No |
ClinGen TOPMed gnomAD |
|
rs759177439 CA7342265 |
114 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
CA390953590 rs1357859355 |
114 | P>R | No |
ClinGen gnomAD |
|
CA7342267 rs371961894 |
116 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs199650308 CA7342268 |
119 | K>R | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs1306518140 CA390953656 |
121 | T>A | No |
ClinGen gnomAD |
|
rs764618558 CA7342269 |
124 | P>L | No |
ClinGen ExAC gnomAD |
|
rs910911396 CA266713927 |
125 | A>P | No |
ClinGen TOPMed gnomAD |
|
rs751958406 CA7342270 |
125 | A>V | No |
ClinGen ExAC gnomAD |
|
CA390953724 rs1188168961 |
127 | K>N | No |
ClinGen gnomAD |
|
CA390955446 rs1272647511 |
130 | I>M | No |
ClinGen gnomAD |
|
CA7342309 rs773480441 |
132 | R>T | No |
ClinGen ExAC |
|
rs761071014 CA7342310 |
138 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
CA390955500 rs1446842936 |
139 | V>L | No |
ClinGen gnomAD |
|
CA390955504 rs1228900074 |
140 | S>T | No |
ClinGen TOPMed |
|
CA390955514 rs1426458554 |
141 | P>R | No |
ClinGen gnomAD |
|
rs776900171 CA390955519 |
142 | G>A | No |
ClinGen ExAC gnomAD |
|
CA7342312 rs776900171 |
142 | G>E | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
CA390955516 rs1595421061 |
142 | G>R | No |
ClinGen Ensembl |
|
CA390955523 rs1367414671 |
143 | G>C | No |
ClinGen gnomAD |
|
CA7342313 rs144315305 |
143 | G>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA390955521 rs1367414671 |
143 | G>S | No |
ClinGen gnomAD |
|
CA390955530 rs1164652665 |
144 | R>Q | No |
ClinGen TOPMed gnomAD |
|
rs752770872 CA7342315 |
148 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
CA390955565 rs1304751208 |
149 | G>A | No |
ClinGen TOPMed |
|
rs1342349380 CA390955567 |
150 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
CA390955578 rs928193159 |
151 | S>C | No |
ClinGen TOPMed gnomAD |
|
CA266722467 rs928193159 |
151 | S>Y | No |
ClinGen TOPMed gnomAD |
|
CA390955580 rs1312009273 |
152 | R>G | No |
ClinGen TOPMed gnomAD |
|
CA7342318 rs750230794 |
155 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
COSM1371947 CA7342319 rs201185419 |
157 | R>C | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
rs779637372 CA7342320 |
157 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342321 rs749660797 |
158 | T>I | No |
ClinGen ExAC gnomAD |
|
rs749660797 CA390955620 |
158 | T>K | No |
ClinGen ExAC gnomAD |
|
CA390955638 rs779370794 |
161 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342323 rs779370794 |
161 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342324 rs748693883 |
164 | S>C | No |
ClinGen ExAC gnomAD |
|
rs1256268506 CA390955662 |
165 | S>P | No |
ClinGen TOPMed |
|
CA390955706 rs1423949084 |
171 | S>C | No |
ClinGen gnomAD |
|
rs1423949084 CA390955705 |
171 | S>G | No |
ClinGen gnomAD |
|
CA7342351 rs768636587 |
175 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
CA390957039 rs1374653116 |
178 | P>S | No |
ClinGen TOPMed |
|
rs898634202 CA266733140 |
181 | S>G | No |
ClinGen TOPMed gnomAD |
|
rs898634202 CA390957069 |
181 | S>R | No |
ClinGen TOPMed gnomAD |
|
CA266735492 rs1055155649 |
186 | Y>C | No |
ClinGen TOPMed gnomAD |
|
CA390957731 rs1595446107 |
187 | V>A | No |
ClinGen Ensembl |
|
rs1279467982 CA390957781 |
189 | M>I | No |
ClinGen gnomAD |
|
TCGA novel | 190 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA390957835 rs1343214276 COSM1707877 |
192 | R>C | skin [Cosmic] | No |
ClinGen cosmic curated gnomAD |
rs749083976 CA7342370 |
192 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
CA266735518 rs749083976 |
192 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
rs768385829 CA7342371 |
193 | G>E | No |
ClinGen ExAC gnomAD |
|
rs577805530 CA7342372 |
194 | R>C | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs1214245534 CA390957871 |
194 | R>H | No |
ClinGen gnomAD |
|
rs1285075664 CA390957882 |
195 | P>A | No |
ClinGen gnomAD |
|
CA7342373 rs761687162 |
195 | P>L | No |
ClinGen ExAC gnomAD |
|
rs770994133 CA7342374 |
197 | T>A | No |
ClinGen ExAC gnomAD |
|
CA390957918 rs1235789625 |
197 | T>I | No |
ClinGen gnomAD |
|
CA7342376 rs759686790 |
198 | M>L | No |
ClinGen ExAC gnomAD |
|
rs759686790 CA7342377 |
198 | M>V | No |
ClinGen ExAC gnomAD |
|
CA390957955 rs1416288836 |
199 | Y>C | No |
ClinGen gnomAD |
|
CA7342379 rs763351218 |
200 | M>T | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342378 rs752972653 |
200 | M>V | No |
ClinGen ExAC gnomAD |
|
CA7342380 rs764402431 |
201 | P>A | No |
ClinGen ExAC gnomAD |
|
rs1311654855 CA390958007 |
202 | K>R | No |
ClinGen TOPMed gnomAD |
|
rs752060828 CA7342381 |
204 | Q>R | No |
ClinGen ExAC gnomAD |
|
CA390958041 rs1284407294 |
205 | V>L | No |
ClinGen TOPMed gnomAD |
|
rs1284407294 CA390958039 |
205 | V>M | No |
ClinGen TOPMed gnomAD |
|
rs1380812346 CA390958057 |
206 | D>V | No |
ClinGen gnomAD |
|
CA7342382 rs757722177 |
208 | Y>* | No |
ClinGen ExAC gnomAD |
|
rs749951880 CA7342384 |
213 | K>R | No |
ClinGen ExAC gnomAD |
|
CA7342385 rs755746063 |
214 | V>A | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 217 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA7342386 rs779832984 |
218 | T>A | No |
ClinGen ExAC gnomAD |
|
CA390958192 rs1222002027 |
218 | T>I | No |
ClinGen gnomAD |
|
rs768458744 CA7342388 |
220 | R>K | No |
ClinGen ExAC gnomAD |
|
CA390958252 rs1221328193 |
226 | V>I | No |
ClinGen TOPMed |
|
rs777466555 CA266737309 |
227 | Y>C | No |
ClinGen TOPMed |
|
CA390958309 rs1595449838 |
233 | D>A | No |
ClinGen Ensembl |
|
rs746986316 CA7342413 |
242 | P>L | No |
ClinGen ExAC gnomAD |
|
CA266737355 rs1037525338 |
243 | T>K | No |
ClinGen Ensembl |
|
rs749465112 COSM199348 CA7342416 |
247 | V>I | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
rs929213761 CA266737412 |
251 | A>T | No |
ClinGen Ensembl |
|
rs201716032 CA7342421 |
253 | V>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA390958448 rs1595449973 |
254 | V>G | No |
ClinGen Ensembl |
|
CA390958451 rs1208314885 COSM1477361 |
255 | V>L | Variant assessed as Somatic; 4.623e-05 impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
CA390958456 rs1399359016 |
256 | L>V | No |
ClinGen TOPMed |
|
CA390958463 rs1301898693 |
257 | Y>H | No |
ClinGen TOPMed |
|
rs761286833 CA7342422 |
258 | N>D | No |
ClinGen ExAC TOPMed gnomAD |
|
CA390958475 rs765931165 |
258 | N>K | No |
ClinGen ExAC TOPMed gnomAD |
|
CA390958481 rs1595450007 |
259 | V>G | No |
ClinGen Ensembl |
|
CA390958489 rs1156659165 |
260 | E>D | No |
ClinGen TOPMed |
|
rs1595450018 CA390958487 |
260 | E>G | No |
ClinGen Ensembl |
|
TCGA novel | 260 | E>missing | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA390958538 rs1595450041 |
267 | Y>S | No |
ClinGen Ensembl |
|
rs764781997 CA390958544 |
268 | A>S | No |
ClinGen ExAC gnomAD |
|
CA7342426 COSM2148885 rs764781997 |
268 | A>T | Variant assessed as Somatic; 0.0 impact. central_nervous_system [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
rs1169263368 CA390958547 |
268 | A>V | No |
ClinGen gnomAD |
|
CA390958550 rs1463156255 |
269 | G>D | No |
ClinGen gnomAD |
|
rs752441148 CA7342427 |
269 | G>S | No |
ClinGen ExAC gnomAD |
|
rs1387201740 CA390958563 |
271 | N>H | No |
ClinGen gnomAD |
|
rs544894253 CA266737512 |
271 | N>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA390958565 rs1304863094 |
271 | N>S | No |
ClinGen gnomAD |
|
rs757195852 CA390958573 |
272 | D>E | No |
ClinGen ExAC gnomAD |
|
rs746895186 CA7342430 |
272 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs200809929 CA390958581 |
273 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA390958583 rs749319570 |
274 | V>L | No |
ClinGen ExAC gnomAD |
|
rs749319570 CA7342433 |
274 | V>M | No |
ClinGen ExAC gnomAD |
|
rs1464489295 CA390958629 |
279 | V>I | No |
ClinGen gnomAD |
|
CA266738379 rs753377720 |
283 | R>Q | No |
ClinGen Ensembl |
|
CA7342456 rs778206633 COSM1205254 |
283 | R>W | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
CA390958678 rs1454763720 |
287 | A>T | No |
ClinGen gnomAD |
|
rs1376623294 CA390958684 |
288 | T>A | No |
ClinGen gnomAD |
|
CA390958696 rs1183651500 |
290 | Q>K | No |
ClinGen TOPMed |
|
rs771374390 CA7342458 |
291 | V>I | No |
ClinGen ExAC gnomAD |
|
CA7342459 rs201676476 |
292 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342460 rs377163239 |
293 | G>D | No |
ClinGen ESP ExAC gnomAD |
|
rs1233196169 CA390958714 |
293 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
CA7342461 rs769133936 |
294 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1205135496 CA390958722 |
294 | T>R | No |
ClinGen gnomAD |
|
TCGA novel | 295 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs200033183 CA266738438 |
298 | G>R | No |
ClinGen Ensembl |
|
rs1305810561 CA390958773 |
300 | Q>E | No |
ClinGen TOPMed |
|
rs1423043972 CA390958796 |
303 | P>R | No |
ClinGen gnomAD |
|
CA390958794 rs1566927458 |
303 | P>S | No |
ClinGen Ensembl |
|
rs140354054 CA7342481 |
304 | H>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA390958805 rs1330759781 |
305 | V>M | No |
ClinGen TOPMed |
|
rs748777777 CA7342482 |
306 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs1348466600 CA390958815 |
306 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
rs1218426279 CA390958862 |
313 | L>S | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 313 | L>W | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
COSM949266 rs201984017 CA7342486 |
318 | V>I | endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
CA266740261 rs770972865 |
319 | I>T | No |
ClinGen gnomAD |
|
CA7342487 rs773065255 |
321 | I>T | No |
ClinGen ExAC gnomAD |
|
rs1029082138 CA266740264 |
321 | I>V | No |
ClinGen Ensembl |
|
CA7342488 rs760454967 |
322 | G>D | No |
ClinGen ExAC gnomAD |
|
CA266740268 rs140561126 COSM106780 |
323 | F>V | skin [Cosmic] | No |
ClinGen cosmic curated Ensembl |
TCGA novel | 325 | D>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA390958937 rs1274766073 |
325 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
rs766326324 CA7342489 |
326 | R>Q | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs1292235007 CA390958950 |
327 | A>G | No |
ClinGen TOPMed gnomAD |
|
CA7342490 rs753875686 |
327 | A>P | No |
ClinGen ExAC gnomAD |
|
CA390958951 rs1292235007 |
327 | A>V | No |
ClinGen TOPMed gnomAD |
|
rs1191444604 CA390958973 |
331 | I>V | No |
ClinGen gnomAD |
|
rs1435929349 CA390958982 |
332 | A>T | No |
ClinGen TOPMed |
|
rs774471417 CA266740318 |
334 | S>L | No |
ClinGen Ensembl |
|
TCGA novel | 336 | S>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1387438891 CA390959443 |
340 | T>A | No |
ClinGen gnomAD |
|
CA7342512 rs200131195 |
341 | N>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA390959475 rs1380699529 |
345 | V>M | No |
ClinGen TOPMed |
|
rs200777350 CA7342513 |
346 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA266744965 rs953860102 |
346 | D>H | No |
ClinGen TOPMed |
|
rs925373616 CA266745005 |
349 | N>D | No |
ClinGen TOPMed |
|
CA390959506 rs141653535 |
349 | N>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs202153209 CA390959508 |
350 | D>H | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs202153209 CA7342516 |
350 | D>N | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs142168028 CA7342518 |
352 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA266745061 rs949662316 |
355 | V>I | No |
ClinGen TOPMed |
|
rs775867027 CA266745068 |
357 | D>G | No |
ClinGen gnomAD |
|
TCGA novel | 359 | Q>H | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1311963192 CA390959586 |
361 | E>K | No |
ClinGen TOPMed |
|
CA390959594 rs1237760524 |
362 | E>K | No |
ClinGen gnomAD |
|
rs1308271924 CA390959603 |
363 | K>E | No |
ClinGen gnomAD |
|
CA7342519 rs367836399 |
365 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs779465949 CA7342520 |
365 | A>V | No |
ClinGen ExAC gnomAD |
|
CA390959631 rs1285364591 |
367 | V>A | No |
ClinGen TOPMed |
|
rs1373025630 CA390959627 |
367 | V>M | No |
ClinGen TOPMed |
|
rs1276568153 CA390959636 |
368 | K>T | No |
ClinGen gnomAD |
|
CA7342545 rs372044881 |
369 | C>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1321358203 CA390959654 |
369 | C>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
COSM1163075 CA266746532 rs919380637 |
371 | N>D | pancreas [Cosmic] | No |
ClinGen cosmic curated Ensembl |
rs1285215387 CA390959681 |
373 | A>T | No |
ClinGen TOPMed gnomAD |
|
rs745642099 CA7342547 |
375 | F>L | No |
ClinGen ExAC gnomAD |
|
rs34198557 CA390959710 |
377 | A>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs34198557 CA7342548 VAR_031720 |
377 | A>V | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs775460140 CA7342550 |
378 | D>E | No |
ClinGen ExAC gnomAD |
|
rs762825387 CA7342551 |
382 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
rs773171158 CA7342553 |
385 | N>S | No |
ClinGen ExAC gnomAD |
|
CA7342554 rs760811233 |
386 | I>F | No |
ClinGen ExAC TOPMed gnomAD |
|
CA266746611 rs760811233 |
386 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
CA390959771 rs1225434944 |
387 | I>V | No |
ClinGen TOPMed gnomAD |
|
CA390959817 rs1270379365 |
393 | S>L | No |
ClinGen gnomAD |
|
CA7342555 rs766576648 |
394 | H>Y | No |
ClinGen ExAC gnomAD |
|
rs754110185 CA7342556 COSM212533 |
396 | Y>* | kidney Variant assessed as Somatic; impact. breast [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated ExAC NCI-TCGA |
CA390959892 rs1595467310 |
404 | S>C | No |
ClinGen Ensembl |
|
rs200224154 CA7342557 |
406 | N>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA390959911 rs1191667320 |
407 | K>R | No |
ClinGen TOPMed |
|
CA7342558 rs778766049 |
409 | Q>E | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342561 rs763588599 |
413 | E>G | No |
ClinGen ExAC gnomAD |
|
COSM260679 CA7342560 rs758842019 |
413 | E>K | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
CA390959951 rs758842019 |
413 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA390959974 rs1352265432 |
414 | K>R | No |
ClinGen gnomAD |
|
rs778685976 CA7342588 |
415 | Q>R | No |
ClinGen ExAC gnomAD |
|
rs770948099 CA7342590 |
420 | F>L | No |
ClinGen ExAC gnomAD |
|
rs1179594495 CA390960030 |
422 | L>H | No |
ClinGen TOPMed |
|
rs1236059830 CA390960037 |
423 | C>S | No |
ClinGen gnomAD |
|
TCGA novel | 426 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA390960067 rs1159799095 |
428 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
CA7342596 rs764557166 |
430 | G>D | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs763202236 CA7342595 |
430 | G>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs762427162 CA7342598 |
433 | I>V | No |
ClinGen ExAC gnomAD |
|
CA390960527 rs1595468466 |
434 | T>A | No |
ClinGen Ensembl |
|
TCGA novel | 437 | S>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA266747460 rs143022643 |
438 | S>G | No |
ClinGen ESP |
|
rs749952059 CA7342600 |
442 | L>S | No |
ClinGen ExAC gnomAD |
|
rs1595468495 CA390960648 |
443 | V>E | No |
ClinGen Ensembl |
|
rs1309868400 CA390960641 |
443 | V>I | No |
ClinGen gnomAD |
|
rs760292201 CA7342601 CA390960674 |
445 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
CA390960797 rs1269660357 |
448 | T>K | No |
ClinGen gnomAD |
|
CA7342623 rs373198786 |
450 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA7342625 rs758242532 |
453 | Y>C | No |
ClinGen ExAC gnomAD |
|
rs758242532 CA7342624 |
453 | Y>S | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 454 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1038862727 CA266748533 |
455 | V>A | No |
ClinGen Ensembl |
|
CA266748548 rs868832749 |
457 | G>E | No |
ClinGen Ensembl |
|
rs1172931506 CA390960852 |
457 | G>R | No |
ClinGen gnomAD |
|
TCGA novel | 458 | A>G | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1348520564 CA390960861 |
458 | A>G | No |
ClinGen gnomAD |
|
CA390960889 rs780198361 |
462 | G>D | No |
ClinGen ExAC gnomAD |
|
rs780198361 CA7342628 |
462 | G>V | No |
ClinGen ExAC gnomAD |
|
CA7342629 rs749406648 |
463 | I>V | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342632 rs748502379 |
468 | M>I | No |
ClinGen ExAC gnomAD |
|
CA390960949 rs1245149705 |
471 | D>G | No |
ClinGen gnomAD |
|
rs772605923 CA7342633 |
474 | L>V | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342634 rs773816965 |
476 | S>L | No |
ClinGen ExAC gnomAD |
|
rs1566933571 CA390960993 |
479 | G>R | No |
ClinGen Ensembl |
|
CA7342636 rs770288415 |
482 | R>Q | No |
ClinGen ExAC gnomAD |
|
CA7342637 rs776208215 |
483 | K>R | No |
ClinGen ExAC gnomAD |
|
CA390961028 rs1156530740 |
484 | L>F | No |
ClinGen TOPMed |
|
rs1444478190 CA390961029 |
484 | L>H | No |
ClinGen gnomAD |
|
CA7342640 rs775168648 |
486 | S>T | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1166714409 CA390961049 |
487 | W>* | No |
ClinGen TOPMed |
|
CA390961056 rs1418445573 COSM1371953 |
488 | S>N | large_intestine [Cosmic] | No |
ClinGen cosmic curated TOPMed gnomAD |
CA7342642 rs763905625 |
489 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
CA390961087 rs1290337969 |
492 | Q>R | No |
ClinGen gnomAD |
|
CA7342644 rs757227237 |
495 | R>C | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
CA7342645 rs767424546 |
495 | R>H | No |
ClinGen ExAC gnomAD |
|
rs753943424 CA7342646 |
497 | T>M | No |
ClinGen ExAC gnomAD |
|
CA266750798 rs1011408110 |
500 | P>L | No |
ClinGen gnomAD |
|
CA7342662 rs767471183 |
500 | P>S | No |
ClinGen ExAC |
|
CA266750779 rs767471183 |
500 | P>T | No |
ClinGen ExAC |
|
CA7342663 rs750367861 |
502 | Q>E | No |
ClinGen ExAC gnomAD |
|
rs1264690170 CA390961172 |
503 | F>L | No |
ClinGen TOPMed gnomAD |
|
CA390961181 rs1177541552 |
505 | P>A | No |
ClinGen TOPMed |
|
rs1444645451 COSM1371954 CA390961195 |
507 | R>Q | large_intestine Variant assessed as Somatic; impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA TOPMed |
rs1244613795 CA390961205 |
509 | V>L | No |
ClinGen TOPMed |
|
rs769115435 CA266750818 |
511 | E>K | No |
ClinGen TOPMed gnomAD |
|
rs1436504479 CA390961226 |
512 | G>E | No |
ClinGen gnomAD |
|
CA390961230 rs1284748562 |
513 | K>E | No |
ClinGen TOPMed |
|
CA7342666 rs752911960 |
513 | K>R | No |
ClinGen ExAC gnomAD |
|
rs182337671 CA7342667 RCV000895024 |
515 | D>N | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
rs747385711 CA7342669 |
516 | V>A | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 516 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 518 | L>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs757607536 CA7342670 |
519 | I>T | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 520 | G>D | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1457222268 CA390961286 |
522 | T>S | No |
ClinGen gnomAD |
|
rs1246819725 CA390961301 |
524 | N>S | No |
ClinGen TOPMed |
|
TCGA novel | 529 | G>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs535752275 CA7342673 |
530 | T>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA390961344 rs1327227184 |
531 | L>V | No |
ClinGen TOPMed |
|
rs370318541 CA7342675 |
537 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
CA7342674 rs375650693 |
537 | P>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA390961387 rs1224354031 |
538 | I>V | No |
ClinGen gnomAD |
|
CA390961498 rs1419418246 |
542 | H>L | No |
ClinGen Ensembl |
|
CA7342699 rs760611901 |
544 | D>N | No |
ClinGen ExAC gnomAD |
|
rs1190528110 CA390961559 |
547 | W>R | No |
ClinGen TOPMed |
|
rs1192076161 CA390961583 |
548 | G>A | No |
ClinGen gnomAD |
|
rs1444902051 CA390961575 |
548 | G>R | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
CA266751246 rs1005241159 |
551 | I>V | No |
ClinGen Ensembl |
|
VAR_031721 CA266751247 rs17853154 |
552 | H>N | No |
ClinGen UniProt Ensembl dbSNP |
|
CA7342700 rs770978329 |
552 | H>Q | No |
ClinGen ExAC gnomAD |
|
CA390961625 rs1566935368 |
552 | H>R | No |
ClinGen Ensembl |
|
CA390961631 rs1451167175 |
553 | A>T | No |
ClinGen gnomAD |
|
rs1317289875 CA390961655 |
555 | K>Q | No |
ClinGen TOPMed gnomAD |
|
rs763053686 CA7342702 |
556 | S>F | No |
ClinGen ExAC gnomAD |
|
rs2250718 CA7342701 VAR_031722 |
556 | S>P | No |
ClinGen UniProt 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs2250718 CA390961670 |
556 | S>T | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
TCGA novel | 558 | F>L | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs751754763 CA7342704 |
561 | C>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs761952770 CA7342705 |
561 | C>Y | No |
ClinGen ExAC gnomAD |
|
rs547746983 CA390961767 |
563 | H>P | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA7342706 rs547746983 |
563 | H>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
TCGA novel | 564 | D>N | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs372044278 CA7342708 |
570 | W>* | No |
ClinGen ESP ExAC gnomAD |
|
rs375349874 CA7342709 |
571 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA390961861 rs1360737562 |
572 | A>S | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
CA266751331 rs889624634 |
574 | G>C | No |
ClinGen TOPMed gnomAD |
|
CA390961877 rs889624634 |
574 | G>S | No |
ClinGen TOPMed gnomAD |
|
CA390961903 rs1266665290 |
576 | R>C | No |
ClinGen gnomAD |
|
CA7342711 rs200753382 |
576 | R>H | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ESP ExAC NCI-TCGA TOPMed gnomAD |
CA266751365 rs150691576 |
577 | P>A | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1261930229 CA390961916 |
577 | P>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
rs150691576 CA7342712 |
577 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs376629514 CA390961920 |
578 | V>F | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs376629514 CA7342714 |
578 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs376629514 CA7342715 |
578 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1475308914 CA390961956 |
580 | D>G | No |
ClinGen Ensembl |
|
CA390961948 rs1242322204 |
580 | D>N | No |
ClinGen gnomAD |
|
rs960911673 CA266751414 |
583 | I>V | No |
ClinGen gnomAD |
|
rs757972076 CA7342734 |
585 | D>E | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 587 | A>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs777532998 CA7342735 |
588 | Q>P | No |
ClinGen ExAC gnomAD |
|
CA266753903 rs559063164 |
596 | G>E | No |
ClinGen 1000Genomes |
|
CA7342737 rs757069320 |
597 | S>C | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 597 | S>F | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 600 | A>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA266753918 rs765453294 |
600 | A>T | No |
ClinGen Ensembl |
|
rs1396360918 CA390962153 |
600 | A>V | No |
ClinGen gnomAD |
|
rs544803995 CA7342739 |
602 | G>A | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs1392499169 CA390962161 COSM3377329 |
602 | G>R | pancreas [Cosmic] | No |
ClinGen cosmic curated gnomAD |
rs1396438133 CA390962177 |
604 | L>R | No |
ClinGen TOPMed |
|
rs1441132851 CA390962173 |
604 | L>V | No |
ClinGen TOPMed |
|
CA7342740 rs769606640 |
605 | T>N | No |
ClinGen ExAC TOPMed gnomAD |
|
rs769606640 CA7342741 |
605 | T>S | No |
ClinGen ExAC TOPMed gnomAD |
|
CA391150579 rs1424183623 |
611 | F>Y | No |
ClinGen TOPMed |
|
CA7342764 rs776959049 |
612 | D>N | No |
ClinGen ExAC gnomAD |
|
CA391150588 rs1391242505 |
612 | D>V | No |
ClinGen TOPMed |
|
CA266520636 rs909830618 |
613 | T>A | No |
ClinGen TOPMed |
|
CA7342765 rs759785929 |
615 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
CA391150610 rs1221795290 |
616 | K>E | No |
ClinGen gnomAD |
|
rs371062416 CA7342766 |
616 | K>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA7342768 rs763567379 |
617 | D>N | No |
ClinGen ExAC gnomAD |
|
CA391150630 rs1185037385 |
619 | V>I | No |
ClinGen gnomAD |
|
rs761460826 CA7342771 |
621 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
rs767048150 CA7342772 |
622 | H>Q | No |
ClinGen ExAC gnomAD |
|
CA391150664 rs1270326922 |
624 | D>G | No |
ClinGen TOPMed |
|
rs755817038 CA7342774 |
626 | N>I | No |
ClinGen ExAC gnomAD |
|
rs753712572 CA7342776 |
627 | E>K | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
CA391150681 COSM673829 rs753712572 |
627 | E>Q | endometrium [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
rs200963903 CA7342777 |
629 | L>P | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA391150708 rs200744722 |
631 | V>I | No |
ClinGen TOPMed gnomAD |
|
CA266520691 rs200744722 |
631 | V>L | No |
ClinGen TOPMed gnomAD |
|
CA7342780 rs200276967 |
632 | M>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA391150723 rs781228383 |
633 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs781228383 CA7342781 |
633 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342801 rs765125630 |
641 | L>F | No |
ClinGen ExAC gnomAD |
|
CA7342802 rs371654215 |
647 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1166442754 CA391150841 |
648 | N>T | No |
ClinGen TOPMed |
|
CA391150854 rs1330030730 |
650 | I>V | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 654 | G>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA7342804 rs781342353 |
655 | V>I | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
CA266529873 rs781342353 |
655 | V>L | No |
ClinGen ExAC TOPMed gnomAD |
|
CA391150902 rs1268828039 |
657 | D>N | No |
ClinGen TOPMed |
|
CA391150926 rs1211284094 |
660 | R>K | No |
ClinGen gnomAD |
|
rs756353164 CA7342806 |
663 | T>M | No |
ClinGen ExAC gnomAD |
|
CA391150973 rs1472698384 |
667 | K>R | No |
ClinGen gnomAD |
|
CA7342808 rs749641115 |
669 | S>L | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 672 | S>C | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1344938182 CA391151032 |
674 | F>V | No |
ClinGen gnomAD |
|
rs759196249 CA7342835 |
675 | I>M | No |
ClinGen ExAC gnomAD |
|
CA7342836 rs143172203 |
676 | T>A | No |
ClinGen ESP ExAC gnomAD |
|
rs1450662564 CA391151047 |
676 | T>S | No |
ClinGen TOPMed gnomAD |
|
CA391151106 rs1296339723 |
685 | Q>E | No |
ClinGen TOPMed |
|
rs762714465 CA7342838 |
685 | Q>H | No |
ClinGen ExAC gnomAD |
|
rs775260577 CA7342837 |
685 | Q>R | No |
ClinGen ExAC gnomAD |
|
CA391151118 rs1446160952 |
686 | F>L | No |
ClinGen TOPMed |
|
CA7342841 rs373460692 |
688 | V>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA7342840 rs373460692 |
688 | V>M | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA391151154 rs1160293832 |
692 | G>E | No |
ClinGen TOPMed |
|
rs1431577345 CA391151151 |
692 | G>R | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 692 | G>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA391151158 rs1161726419 |
693 | D>Y | No |
ClinGen gnomAD |
|
rs755251254 CA266530144 |
694 | Y>* | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342843 rs754048368 |
694 | Y>F | No |
ClinGen ExAC gnomAD |
|
COSM2261728 rs779340798 CA7342845 |
695 | E>K | pancreas [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
TCGA novel | 696 | I>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1595509583 CA391151187 |
697 | L>F | No |
ClinGen Ensembl |
|
rs1244832390 CA391151222 |
700 | V>F | No |
ClinGen gnomAD |
|
CA391151220 rs1244832390 |
700 | V>I | No |
ClinGen gnomAD |
|
CA7342864 rs752896428 |
701 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342865 rs370882254 |
704 | C>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
TCGA novel | 706 | Q>* | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs975934684 CA266531611 |
707 | V>I | No |
ClinGen gnomAD |
|
CA391151266 rs975934684 |
707 | V>L | No |
ClinGen gnomAD |
|
rs1465386711 CA391151271 |
708 | V>I | No |
ClinGen TOPMed |
|
CA391151281 rs1255301684 |
709 | S>T | No |
ClinGen gnomAD |
|
rs757753739 CA7342868 |
710 | V>A | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 710 | V>M | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs781706468 CA7342869 |
711 | E>A | No |
ClinGen ExAC TOPMed gnomAD |
|
CA391151294 rs781706468 |
711 | E>V | No |
ClinGen ExAC TOPMed gnomAD |
|
CA266531632 rs778261677 |
712 | T>S | No |
ClinGen Ensembl |
|
CA391151304 rs1193399520 |
713 | T>A | No |
ClinGen TOPMed |
|
CA391151307 rs1478764824 |
713 | T>I | No |
ClinGen TOPMed |
|
CA391151309 rs1472367834 |
714 | R>* | No |
ClinGen gnomAD |
|
TCGA novel | 715 | D>Y | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
rs1030194965 CA266531633 |
717 | E>A | No |
ClinGen TOPMed gnomAD |
|
rs1030194965 CA391151334 |
717 | E>G | No |
ClinGen TOPMed gnomAD |
|
CA391151344 rs1468505267 |
718 | W>C | No |
ClinGen gnomAD |
|
CA7342871 rs769332840 |
729 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
CA391151540 rs1566949789 |
732 | V>L | No |
ClinGen Ensembl |
|
CA391151570 rs1384766187 |
736 | G>D | No |
ClinGen TOPMed gnomAD |
|
rs1384766187 CA391151572 |
736 | G>V | No |
ClinGen TOPMed gnomAD |
|
rs200052726 CA7342888 COSM949274 |
737 | S>L | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
CA7342891 rs748895684 |
739 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
CA391151592 rs1212267323 |
740 | T>A | No |
ClinGen TOPMed |
|
CA7342894 rs747925583 |
742 | I>F | No |
ClinGen ExAC gnomAD |
|
rs772026903 CA7342895 |
743 | N>D | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342896 rs773238153 |
743 | N>S | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 744 | A>V | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA266532547 rs753296372 COSM1128337 |
745 | V>I | Variant assessed as Somatic; 0.0 impact. prostate [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated NCI-TCGA gnomAD |
rs756665522 CA266532552 |
746 | C>S | No |
ClinGen gnomAD |
|
CA7342898 rs148400435 |
747 | R>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA7342901 rs763147507 |
747 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
CA7342900 rs763147507 COSM265441 |
747 | R>Q | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
CA7342899 rs148400435 |
747 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA391151646 rs1566949911 |
749 | H>Q | No |
ClinGen Ensembl |
|
rs139856422 RCV000954983 CA7342904 |
749 | H>R | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs762125675 CA7342903 |
749 | H>Y | No |
ClinGen ExAC gnomAD |
|
rs562625419 CA7342905 |
750 | E>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA7342906 rs576268658 |
751 | K>Q | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA391151663 rs1367881543 |
752 | K>E | No |
ClinGen gnomAD |
|
CA391151665 rs201021106 |
752 | K>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs201021106 CA7342907 |
752 | K>T | No |
ClinGen ExAC TOPMed gnomAD |
|
rs967391724 CA266532606 |
758 | D>N | No |
ClinGen TOPMed |
|
COSM84267 CA7342910 rs778393782 |
759 | D>N | Variant assessed as Somatic; 0.0 impact. pancreas endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
rs1320061161 CA391151717 |
760 | F>C | No |
ClinGen gnomAD |
|
rs747829508 CA7342911 |
765 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1489609242 CA391151782 |
769 | P>L | No |
ClinGen gnomAD |
|
TCGA novel | 769 | P>S | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA7342912 COSM949276 rs758206081 |
770 | C>S | Variant assessed as Somatic; 0.0 impact. endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
CA7342914 rs746865287 |
771 | S>L | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs1391467270 CA391151795 |
772 | Q>K | No |
ClinGen gnomAD |
|
CA7342916 rs776678602 |
772 | Q>R | No |
ClinGen ExAC gnomAD |
|
CA7342917 rs749295111 |
773 | F>L | No |
ClinGen ExAC gnomAD |
|
CA266532637 rs999958489 |
774 | R>M | No |
ClinGen gnomAD |
|
CA7342939 rs772260740 |
776 | P>L | No |
ClinGen ExAC gnomAD |
|
rs1330088045 CA391151839 |
777 | S>G | No |
ClinGen TOPMed gnomAD |
|
CA7342940 rs151004612 |
779 | I>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA391151864 rs1442317256 |
780 | Y>C | No |
ClinGen gnomAD |
|
rs776949763 CA7342943 |
781 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs369564518 CA266533581 COSM1371958 CA7342945 |
782 | G>R | Variant assessed as Somatic; 0.0 impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD NCI-TCGA |
CA266533590 rs902750831 |
783 | H>D | No |
ClinGen Ensembl |
|
rs1566950568 CA391151884 |
783 | H>Q | No |
ClinGen Ensembl |
|
CA391151888 rs1250556824 |
784 | S>N | No |
ClinGen gnomAD |
|
CA391151889 rs1250556824 |
784 | S>T | No |
ClinGen gnomAD |
|
CA391151894 rs1413178013 |
785 | S>G | No |
ClinGen TOPMed |
|
TCGA novel | 786 | H>R | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA266533598 rs979958705 |
787 | V>F | No |
ClinGen gnomAD |
|
CA391151909 rs979958705 |
787 | V>I | No |
ClinGen gnomAD |
|
CA391151924 rs1160068688 |
789 | N>S | No |
ClinGen gnomAD |
|
rs957277200 CA266533610 |
790 | V>A | No |
ClinGen TOPMed gnomAD |
|
CA266533606 rs1034630974 |
790 | V>I | No |
ClinGen Ensembl |
|
rs147904150 CA7342946 |
791 | D>N | Variant assessed as Somatic; 0.0 impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
rs762598407 CA7342947 |
792 | F>C | No |
ClinGen ExAC gnomAD |
|
CA7342949 rs141606780 |
794 | C>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1566950637 CA391151969 |
796 | D>N | No |
ClinGen Ensembl |
|
CA7342950 rs756953819 |
797 | S>N | Variant assessed as Somatic; 0.0003258 impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
CA7342951 rs781052964 |
798 | H>Y | No |
ClinGen ExAC TOPMed |
|
CA391151996 rs1411945221 |
800 | I>V | No |
ClinGen gnomAD |
|
TCGA novel | 801 | S>P | Variant assessed as Somatic; impact. [NCI-TCGA] | No | NCI-TCGA |
CA7342952 rs150426019 |
802 | T>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA7342955 rs748197062 |
804 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
CA391152056 rs1340697783 |
809 | I>V | No |
ClinGen gnomAD |
|
rs1039863595 CA266533712 CA391152067 |
810 | M>I | No |
ClinGen TOPMed gnomAD |
|
rs772174519 CA7342956 COSM199359 |
813 | R>C | Variant assessed as Somatic; 0.0 impact. large_intestine endometrium [NCI-TCGA, Cosmic] | No |
ClinGen cosmic curated ExAC NCI-TCGA gnomAD |
rs138177688 CA7342957 |
813 | R>H | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA7342960 rs201298677 |
814 | V>I | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1477542209 CA391152096 |
815 | I>V | No |
ClinGen TOPMed gnomAD |
|
rs199886354 CA266533760 |
816 | I>E | No |
ClinGen Ensembl |
1 associated diseases with O00423
[MIM: 600348]: Band heterotopia (BH)
A brain malformation of the lissencephaly spectrum, resulting from disordered neuronal migration and characterized by bands of gray matter interposed in the central white matter. Disease features include severe developmental delay with intellectual disability, enlarged head circumference, periventricular and ribbon-like subcortical heterotopia, polymicrogyria and agenesis of the corpus callosum. {ECO:0000269|PubMed:24859200, ECO:0000269|PubMed:28556411}. Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- A brain malformation of the lissencephaly spectrum, resulting from disordered neuronal migration and characterized by bands of gray matter interposed in the central white matter. Disease features include severe developmental delay with intellectual disability, enlarged head circumference, periventricular and ribbon-like subcortical heterotopia, polymicrogyria and agenesis of the corpus callosum. {ECO:0000269|PubMed:24859200, ECO:0000269|PubMed:28556411}. Note=The disease is caused by variants affecting the gene represented in this entry.
5 regional properties for O00423
Type | Name | Position | InterPro Accession |
---|---|---|---|
conserved_site | ATP-dependent RNA helicase DEAD-box, conserved site | 227 - 235 | IPR000629 |
domain | Helicase, C-terminal | 292 - 456 | IPR001650 |
domain | DEAD/DEAH box helicase domain | 101 - 268 | IPR011545 |
domain | Helicase superfamily 1/2, ATP-binding domain | 96 - 296 | IPR014001 |
domain | RNA helicase, DEAD-box type, Q motif | 77 - 105 | IPR014014 |
Functions
6 GO annotations of cellular component
Name | Definition |
---|---|
cytosol | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. |
microtubule associated complex | Any multimeric complex connected to a microtubule. |
mitotic spindle midzone | The area in the center of the anaphase spindle consisting of microtubules, microtubule bundling factors and kinesin motors where the spindle microtubules from opposite poles overlap in an antiparallel manner. |
mitotic spindle pole | Either of the ends of a mitotic spindle, a spindle that forms as part of mitosis, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules. |
perinuclear region of cytoplasm | Cytoplasm situated near, or occurring around, the nucleus. |
3 GO annotations of molecular function
Name | Definition |
---|---|
calcium ion binding | Binding to a calcium ion (Ca2+). |
microtubule binding | Binding to a microtubule, a filament composed of tubulin monomers. |
tubulin binding | Binding to monomeric or multimeric forms of tubulin, including microtubules. |
5 GO annotations of biological process
Name | Definition |
---|---|
brain development | The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.). |
hematopoietic progenitor cell differentiation | The process in which precursor cell type acquires the specialized features of a hematopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells. |
microtubule cytoskeleton organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. |
mitotic spindle organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle. |
neuroblast proliferation | The expansion of a neuroblast population by cell division. A neuroblast is any cell that will divide and give rise to a neuron. |
10 | 20 | 30 | 40 | 50 | 60 |
MEDGFSSYSS | LYDTSSLLQF | CNDDSASAAS | SMEVTDRIAS | LEQRVQMQED | DIQLLKSALA |
70 | 80 | 90 | 100 | 110 | 120 |
DVVRRLNITE | EQQAVLNRKG | PTKARPLMQT | LPLRTTVNNG | TVLPKKPTGS | LPSPSGVRKE |
130 | 140 | 150 | 160 | 170 | 180 |
TAVPATKSNI | KRTSSSERVS | PGGRRESNGD | SRGNRNRTGS | TSSSSSGKKN | SESKPKEPVF |
190 | 200 | 210 | 220 | 230 | 240 |
SAEEGYVKMF | LRGRPVTMYM | PKDQVDSYSL | EAKVELPTKR | LKLEWVYGYR | GRDCRNNLYL |
250 | 260 | 270 | 280 | 290 | 300 |
LPTGETVYFI | ASVVVLYNVE | EQLQRHYAGH | NDDVKCLAVH | PDRITIATGQ | VAGTSKDGKQ |
310 | 320 | 330 | 340 | 350 | 360 |
LPPHVRIWDS | VTLNTLHVIG | IGFFDRAVTC | IAFSKSNGGT | NLCAVDDSND | HVLSVWDWQK |
370 | 380 | 390 | 400 | 410 | 420 |
EEKLADVKCS | NEAVFAADFH | PTDTNIIVTC | GKSHLYFWTL | EGSSLNKKQG | LFEKQEKPKF |
430 | 440 | 450 | 460 | 470 | 480 |
VLCVTFSENG | DTITGDSSGN | ILVWGKGTNR | ISYAVQGAHE | GGIFALCMLR | DGTLVSGGGK |
490 | 500 | 510 | 520 | 530 | 540 |
DRKLISWSGN | YQKLRKTEIP | EQFGPIRTVA | EGKGDVILIG | TTRNFVLQGT | LSGDFTPITQ |
550 | 560 | 570 | 580 | 590 | 600 |
GHTDELWGLA | IHASKSQFLT | CGHDKHATLW | DAVGHRPVWD | KIIEDPAQSS | GFHPSGSVVA |
610 | 620 | 630 | 640 | 650 | 660 |
VGTLTGRWFV | FDTETKDLVT | VHTDGNEQLS | VMRYSPDGNF | LAIGSHDNCI | YIYGVSDNGR |
670 | 680 | 690 | 700 | 710 | 720 |
KYTRVGKCSG | HSSFITHLDW | SVNSQFLVSN | SGDYEILYWV | PSACKQVVSV | ETTRDIEWAT |
730 | 740 | 750 | 760 | 770 | 780 |
YTCTLGFHVF | GVWPEGSDGT | DINAVCRAHE | KKLLSTGDDF | GKVHLFSYPC | SQFRAPSHIY |
790 | 800 | 810 | |||
GGHSSHVTNV | DFLCEDSHLI | STGGKDTSIM | QWRVI |