A1X283
Gene name |
SH3PXD2B (FAD49, KIAA1295, TKS4) |
Protein name |
SH3 and PX domain-containing protein 2B |
Names |
Adapter protein HOFI, Factor for adipocyte differentiation 49, Tyrosine kinase substrate with four SH3 domains |
Species |
Homo sapiens (Human) |
KEGG Pathway |
hsa:285590 |
EC number |
|
Protein Class |
SH3 MULTIPLE DOMAIN (PTHR15706) |

Descriptions
The scaffold protein SH3 and PX domain-containing protein 2B (SH3PXD2B, also known as Tks4) is a member of the p47phox-related organizer superfamily and plays a key role in cell motility by affecting the formation of podosomes and invadopodia. In addition, Tks4 is involved in the epidermal growth factor (EGF) signaling pathway, in which EGF induces the translocation of Tks4 from the cytoplasm to the plasma membrane. Tks4 contains an N-terminal region: a phosphoinositide-binding PX domain is followed by two SH3 domains (tandem SH3) and a proline-rich region (PRR). The PRR is followed by a third and a fourth SH3 domain connected by a long (~420 residues) unstructured region. In the autoinhibited state, the tandem SH3 domain of Tks4 binds the PRR and thus the third SH3 domain interacts with the PX domain. The association of the PX domain and the third SH3 domain contributes to the formation of the autoinhibited conformation, and the PRR following the second SH3 domain folds back and associates with the tandem SH3, yielding a compact conformation.
Autoinhibitory domains (AIDs)
Target domain |
5-129 (PX domain) |
Relief mechanism |
PTM |
Assay |
Structural analysis, Split protein assay, Deletion assay, Mutagenesis experiment |
Accessory elements
No accessory elements
Autoinhibited structure

Activated structure

1 structures for A1X283
Entry ID | Method | Resolution | Chain | Position | Source |
---|---|---|---|---|---|
AF-A1X283-F1 | Predicted | AlphaFoldDB |
846 variants for A1X283
Variant ID(s) | Position | Change | Description | Diseaes Association | Provenance |
---|---|---|---|---|---|
rs267607046 VAR_063764 RCV000000213 CA114029 |
43 | R>W | Frank-Ter Haar syndrome Variant assessed as Somatic; MODERATE impact. FTHS [ClinVar, NCI-TCGA, UniProt] | Yes |
ClinGen ClinVar UniProt ExAC NCI-TCGA dbSNP gnomAD |
rs794728005 RCV000000211 |
50 | D>* | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinVar dbSNP |
RCV001155510 rs1758254485 |
92 | V>I | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinVar dbSNP |
RCV000903078 rs368080609 RCV000326087 CA3561533 |
144 | G>C | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
rs149519060 RCV003279033 CA3561440 RCV000728794 |
233 | T>I | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV000324096 CA3561391 rs77955907 RCV001522022 RCV001723952 |
295 | P>Q | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
rs1757135183 RCV001151634 |
300 | L>S | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinVar dbSNP |
rs1156856878 CA362142529 RCV003283998 RCV001151633 |
305 | R>W | Frank-Ter Haar syndrome Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
RCV001151632 rs755251609 RCV002032398 CA3561380 |
309 | A>V | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
RCV001299917 rs111492578 RCV002541909 CA3561372 |
323 | G>R | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV000000212 rs794728006 |
324 | R>missing | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinVar dbSNP |
RCV001151630 rs75198607 RCV001522021 RCV001724257 CA3561364 |
329 | P>L | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV000923263 rs138316493 CA3561358 RCV000301120 |
333 | G>S | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
CA362141608 RCV001157079 rs1490267498 |
343 | R>G | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar dbSNP gnomAD |
rs372893835 RCV001155395 CA132161529 |
363 | P>L | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar ESP TOPMed dbSNP gnomAD |
rs886060423 CA10624184 RCV000344344 |
376 | I>V | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV001155394 RCV000174500 CA240044 rs142779141 RCV003317126 |
431 | A>T | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
rs201324424 CA10620016 CA3561215 RCV000348060 |
442 | H>Q | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
RCV001155392 rs146081598 CA3561213 RCV002550532 RCV000975090 |
445 | T>A | Frank-Ter Haar syndrome Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
CA3561211 RCV002532434 rs552171716 RCV000593029 |
448 | R>W | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
RCV000660439 rs144424788 CA3561191 RCV001861719 COSM369095 |
468 | R>Q | lung Frank-Ter Haar syndrome [Cosmic, ClinVar] | Yes |
ClinGen cosmic curated ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV000283604 rs886060422 CA10620014 |
491 | S>N | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP gnomAD |
CA3561173 RCV001154556 RCV001300336 rs201272196 |
498 | A>T | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
RCV000378173 CA3561158 RCV000441194 rs62621449 |
515 | D>N | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV001154552 rs1027394288 CA132184180 |
537 | L>R | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
RCV001154551 CA132184099 rs886239248 RCV001859009 |
539 | R>Q | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar TOPMed dbSNP |
CA3561125 RCV001510652 RCV001151545 rs536952235 |
558 | G>S | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
RCV003232168 RCV000985041 rs1581259156 CA362147386 |
560 | I>F | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar Ensembl dbSNP |
CA3561109 RCV000596608 rs111230322 RCV000372512 RCV000946899 |
571 | P>L | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
CA3561070 RCV000728796 RCV003279034 rs148050566 |
652 | T>M | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
rs752042835 RCV001151544 CA3561064 |
662 | D>N | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
rs200804079 CA3561047 RCV001151543 |
693 | D>E | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
rs144659619 RCV000764590 CA3561044 RCV000594287 |
698 | R>Q | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV000764589 RCV000591785 CA3561020 rs766153965 |
730 | P>L | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
CA3561014 RCV003317197 RCV000330657 rs141103005 RCV000899923 |
743 | V>M | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
rs1756764977 RCV001156970 |
792 | P>S | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinVar dbSNP |
RCV002520354 rs562915075 CA3560977 RCV000275514 |
799 | L>F | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
rs148498348 RCV000973378 CA3560974 RCV002548373 |
800 | V>I | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP TOPMed dbSNP |
RCV000370035 RCV000350642 rs200899339 CA3560955 |
819 | R>Q | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
CA3560953 rs73317796 RCV000428801 RCV000315417 |
826 | P>L | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
RCV001331474 rs1756757651 RCV001171971 |
864 | D>E | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinVar dbSNP |
rs551498843 RCV001731975 RCV000912910 |
876 | F>missing | Frank-Ter Haar syndrome [ClinVar] | Yes |
ClinVar dbSNP |
RCV000919543 rs200423669 CA3560920 RCV003169310 |
883 | S>G | Inborn genetic diseases [ClinVar] | Yes |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
rs1310261871 CA362146854 |
2 | P>Q | No |
ClinGen TOPMed gnomAD |
|
CA132189110 rs1046519943 |
3 | P>S | No |
ClinGen TOPMed gnomAD |
|
CA362146823 rs1275225636 |
5 | R>G | No |
ClinGen TOPMed |
|
CA3561712 rs780751262 |
5 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs780751262 CA362146815 |
5 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1388377692 CA362146809 |
6 | S>R | No |
ClinGen gnomAD |
|
CA362146802 rs1453862501 |
6 | S>T | No |
ClinGen gnomAD |
|
rs1390840970 CA362146794 |
7 | I>V | No |
ClinGen TOPMed gnomAD |
|
rs746331779 CA3561710 |
8 | V>G | No |
ClinGen ExAC gnomAD |
|
rs868003799 CA132189087 |
10 | V>L | No |
ClinGen Ensembl |
|
rs1381820498 CA362146723 |
11 | K>R | No |
ClinGen TOPMed gnomAD |
|
rs1173510361 CA362146663 |
16 | Q>R | No |
ClinGen TOPMed |
|
CA3561707 rs754104564 |
19 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs754104564 CA362146630 |
19 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362146633 rs1452634168 |
19 | R>W | No |
ClinGen gnomAD |
|
rs200559361 CA362146620 |
20 | V>A | No |
ClinGen ExAC TOPMed gnomAD |
|
rs200559361 CA3561706 |
20 | V>E | No |
ClinGen ExAC TOPMed gnomAD |
|
rs200559361 CA3561705 |
20 | V>G | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362146615 rs1355909849 |
21 | P>A | No |
ClinGen gnomAD |
|
TCGA novel | 21 | P>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs1355909849 CA362146617 |
21 | P>S | No |
ClinGen gnomAD |
|
rs766111643 CA132189055 |
22 | N>D | No |
ClinGen ExAC TOPMed |
|
CA3561703 rs766111643 |
22 | N>H | No |
ClinGen ExAC TOPMed |
|
rs916323729 CA132189053 |
22 | N>S | No |
ClinGen TOPMed |
|
CA362146587 rs1233789999 |
23 | K>R | No |
ClinGen gnomAD |
|
rs1258627895 CA362144575 |
26 | V>L | No |
ClinGen gnomAD |
|
CA362144566 rs1561934197 |
27 | Y>S | No |
ClinGen Ensembl |
|
rs1232193822 CA362144561 |
28 | I>V | No |
ClinGen gnomAD |
|
CA3561674 rs774991139 |
30 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561675 rs142674400 |
30 | R>W | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs201677427 CA3561673 |
32 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1027924540 CA132170991 |
35 | S>C | No |
ClinGen TOPMed gnomAD |
|
rs1401709083 CA362144515 |
35 | S>N | No |
ClinGen gnomAD |
|
CA362144492 rs1430829340 |
39 | E>A | No |
ClinGen TOPMed |
|
CA3561670 rs769797550 |
39 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362144482 rs1469770083 |
40 | A>V | No |
ClinGen TOPMed gnomAD |
|
rs781377610 CA362144465 |
43 | R>P | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561669 rs781377610 |
43 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
rs758252399 CA3561668 |
44 | R>C | No |
ClinGen ExAC gnomAD |
|
rs1212941041 CA362144459 |
44 | R>L | No |
ClinGen gnomAD |
|
CA362144454 rs1418355491 |
45 | Y>C | No |
ClinGen gnomAD |
|
TCGA novel | 49 | F>L | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
TCGA novel | 52 | Q>= | Variant assessed as Somatic; LOW impact. [NCI-TCGA] | No | NCI-TCGA |
rs1354869972 CA362149318 |
55 | M>I | No |
ClinGen gnomAD |
|
CA3561651 rs776875653 |
55 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
COSM3614197 | 60 | P>S | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
COSM1065862 | 61 | M>I | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs747209784 CA3561649 |
61 | M>T | No |
ClinGen ExAC gnomAD |
|
rs375880429 CA3561650 |
61 | M>V | No |
ClinGen ESP ExAC gnomAD |
|
rs1294600900 CA362149166 |
65 | Q>P | No |
ClinGen gnomAD |
|
rs1294600900 CA362149168 |
65 | Q>R | No |
ClinGen gnomAD |
|
CA3561648 rs778606247 |
69 | K>Q | No |
ClinGen ExAC gnomAD |
|
CA3561647 rs757012551 |
69 | K>R | No |
ClinGen ExAC gnomAD |
|
COSM737698 | 71 | R>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs200536170 RCV000489164 CA3561645 |
71 | R>Q | No |
ClinGen ClinVar 1000Genomes ExAC dbSNP gnomAD |
|
rs749197266 CA3561646 |
71 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 76 | L>C | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
COSM1065861 | 78 | G>C | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA362146089 rs1260518038 |
78 | G>V | No |
ClinGen gnomAD |
|
rs61755907 RCV000513982 CA132189989 |
84 | R>* | No |
ClinGen ClinVar ExAC dbSNP gnomAD |
|
rs1581304939 CA362146016 COSM1065860 |
84 | R>Q | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA Cosmic Ensembl |
rs199627294 CA3561616 |
85 | S>N | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs569007910 CA3561613 |
88 | R>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA3561614 rs191035319 |
88 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs376712965 CA3561611 |
89 | D>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
TCGA novel | 89 | D>G | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA362145941 rs1464906718 |
90 | V>M | No |
ClinGen gnomAD |
|
CA3561610 rs773170741 |
94 | R>C | No |
ClinGen ExAC gnomAD |
|
CA3561609 rs769643795 |
94 | R>H | No |
ClinGen ExAC gnomAD |
|
rs748109971 CA3561608 |
95 | L>P | No |
ClinGen ExAC gnomAD |
|
rs1367341603 CA362145858 |
97 | P>A | No |
ClinGen TOPMed gnomAD |
|
CA362145857 rs1367341603 |
97 | P>S | No |
ClinGen TOPMed gnomAD |
|
rs1162266861 CA362145847 |
98 | I>V | No |
ClinGen gnomAD |
|
rs144348295 CA3561607 |
99 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA362145828 rs1256412828 |
99 | D>V | No |
ClinGen gnomAD |
|
CA362145810 rs768113862 |
100 | E>D | No |
ClinGen ExAC gnomAD |
|
rs1191517215 CA362145819 |
100 | E>K | No |
ClinGen gnomAD |
|
CA362145798 rs6880739 |
101 | Y>C | No |
ClinGen Ensembl |
|
rs6880739 CA132189911 VAR_046226 |
101 | Y>F | No |
ClinGen UniProt Ensembl dbSNP |
|
CA362145784 rs1581304863 |
102 | C>S | No |
ClinGen Ensembl |
|
TCGA novel | 105 | L>I | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs1311111466 CA362144771 |
109 | P>S | No |
ClinGen gnomAD |
|
rs761693351 CA132181997 |
110 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561590 rs776745582 |
110 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs761693351 CA3561591 |
110 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 111 | Y>L | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
CA132181954 rs772725434 |
112 | I>M | No |
ClinGen Ensembl |
|
rs1294414911 CA362144725 |
114 | Q>H | No |
ClinGen gnomAD |
|
rs779649453 CA3561586 |
116 | D>G | No |
ClinGen ExAC gnomAD |
|
COSM3827693 | 122 | F>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA362144669 rs1234814076 |
122 | F>S | No |
ClinGen TOPMed |
|
rs1302912842 CA362144653 |
124 | T>R | No |
ClinGen TOPMed |
|
rs1216354796 CA362144645 |
125 | R>S | No |
ClinGen TOPMed |
|
CA362144639 rs1159698502 |
126 | P>L | No |
ClinGen TOPMed gnomAD |
|
CA362144640 rs1159698502 |
126 | P>R | No |
ClinGen TOPMed gnomAD |
|
CA362144644 rs1362048606 |
126 | P>T | No |
ClinGen gnomAD |
|
CA362144631 rs1477888417 |
127 | E>D | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 128 | D>E | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA3561585 rs771418988 |
128 | D>N | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
CA362144629 rs771418988 |
128 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362144622 rs1433875624 |
129 | L>V | No |
ClinGen gnomAD |
|
CA3561584 rs745538071 |
131 | P>S | No |
ClinGen ExAC gnomAD |
|
rs778527787 CA3561583 |
132 | P>H | No |
ClinGen ExAC TOPMed gnomAD |
|
CA132181914 rs778527787 |
132 | P>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs755145107 CA3561557 |
137 | I>T | No |
ClinGen ExAC gnomAD |
|
rs938119583 CA132176087 |
138 | G>A | No |
ClinGen TOPMed gnomAD |
|
CA362144359 rs938119583 |
138 | G>E | No |
ClinGen TOPMed gnomAD |
|
CA132176090 rs865941777 |
138 | G>W | No |
ClinGen Ensembl |
|
CA3561556 rs751663567 |
139 | K>I | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 140 | K>N | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs144922233 CA3561555 |
140 | K>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
TCGA novel | 140 | K>R | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
rs200833313 CA3561554 |
142 | S>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs200833313 CA362144331 |
142 | S>F | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs201056900 CA132170189 |
143 | G>V | No |
ClinGen TOPMed gnomAD |
|
rs1561904968 CA362144070 |
144 | G>D | No |
ClinGen Ensembl |
|
rs368080609 COSM482523 CA132170186 |
144 | G>S | kidney [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
rs149830191 CA3561532 |
145 | D>N | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs973649149 CA132170178 |
146 | Q>K | No |
ClinGen TOPMed |
|
rs139843395 CA3561531 |
148 | S>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA362144042 rs1449322231 |
149 | V>M | No |
ClinGen gnomAD |
|
rs752411983 CA3561530 |
151 | P>A | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1246166974 CA362144026 |
151 | P>L | No |
ClinGen TOPMed gnomAD |
|
CA362144024 rs1246166974 |
151 | P>R | No |
ClinGen TOPMed gnomAD |
|
rs752411983 CA362144027 |
151 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362144019 rs1307603928 |
152 | M>T | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 155 | E>K | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs1197198726 CA362143993 |
156 | Q>* | No |
ClinGen TOPMed |
|
CA362143983 rs1236189655 |
157 | Y>C | No |
ClinGen gnomAD |
|
rs1273037899 CA362143973 |
159 | V>M | No |
ClinGen TOPMed |
|
CA362143949 rs1434431642 |
162 | N>K | No |
ClinGen gnomAD |
|
rs772957262 CA3561524 |
164 | Q>K | No |
ClinGen ExAC |
|
CA362143937 rs1248371137 |
164 | Q>R | No |
ClinGen TOPMed |
|
rs769305311 CA3561522 |
165 | K>N | No |
ClinGen ExAC gnomAD |
|
rs761475512 CA3561521 |
166 | Q>E | No |
ClinGen ExAC gnomAD |
|
CA3561520 rs777163334 COSM3429287 |
169 | S>L | Variant assessed as Somatic; MODERATE impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen NCI-TCGA Cosmic cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
CA362143890 rs367642322 |
170 | E>D | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs780696291 CA3561517 |
171 | I>M | No |
ClinGen ExAC gnomAD |
|
CA362143868 rs1476756868 |
174 | S>G | No |
ClinGen gnomAD |
|
CA362143866 rs1270337742 |
174 | S>N | No |
ClinGen gnomAD |
|
CA362143861 rs374467295 CA362143860 |
175 | V>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3561515 rs374467295 |
175 | V>M | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs779245304 CA3561514 |
177 | Q>K | No |
ClinGen ExAC gnomAD |
|
rs757443743 CA3561513 |
177 | Q>R | No |
ClinGen ExAC gnomAD |
|
CA3561512 rs754053518 |
178 | V>M | No |
ClinGen ExAC gnomAD |
|
CA362143824 rs1440830135 |
181 | I>V | No |
ClinGen TOPMed |
|
rs1217911974 CA362143815 |
182 | I>N | No |
ClinGen gnomAD |
|
CA362143811 rs1581275557 |
183 | E>K | No |
ClinGen Ensembl |
|
CA3561511 rs780971723 |
184 | K>E | No |
ClinGen ExAC gnomAD |
|
rs1301632603 CA362143792 |
185 | N>S | No |
ClinGen TOPMed |
|
TCGA novel | 188 | G>C | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA362143759 rs1421391280 |
188 | G>D | No |
ClinGen TOPMed gnomAD |
|
rs1428807965 CA362143753 |
189 | W>* | No |
ClinGen gnomAD |
|
rs569267612 CA3561487 |
190 | W>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA3561485 rs763810720 |
192 | V>I | No |
ClinGen ExAC gnomAD |
|
CA362143726 rs1198529060 |
193 | S>G | No |
ClinGen gnomAD |
|
rs776019100 CA3561483 |
194 | T>I | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362143715 rs776019100 |
194 | T>N | No |
ClinGen ExAC TOPMed gnomAD |
|
rs201031404 CA3561482 |
195 | A>T | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs1228236131 CA362143711 |
195 | A>V | No |
ClinGen gnomAD |
|
CA3561479 rs374493298 |
196 | E>K | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
CA3561478 rs749334370 |
196 | E>V | No |
ClinGen ExAC gnomAD |
|
rs1561902702 CA362143685 |
199 | G>S | No |
ClinGen Ensembl |
|
CA132168194 rs754732005 |
203 | A>T | No |
ClinGen Ensembl |
|
CA3561477 rs773471152 |
204 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1581272880 CA362143645 |
205 | C>Y | No |
ClinGen Ensembl |
|
CA362143637 rs979306407 |
206 | L>P | No |
ClinGen TOPMed |
|
CA132168179 rs979306407 |
206 | L>R | No |
ClinGen TOPMed |
|
TCGA novel | 207 | E>A | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA3561474 rs779715325 |
207 | E>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1462025824 CA362143613 |
210 | D>H | No |
ClinGen gnomAD |
|
TCGA novel | 212 | V>C | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
CA362143595 rs1581272852 |
212 | V>G | No |
ClinGen Ensembl |
|
CA362143571 rs1581272848 |
215 | E>D | No |
ClinGen Ensembl |
|
rs745849269 CA3561472 |
217 | S>P | No |
ClinGen ExAC gnomAD |
|
CA3561473 rs745849269 |
217 | S>T | No |
ClinGen ExAC gnomAD |
|
rs1757336659 RCV001341142 |
219 | Q>H | No |
ClinVar dbSNP |
|
CA3561470 rs756869968 |
220 | P>L | No |
ClinGen ExAC |
|
rs753379729 CA3561469 |
222 | E>K | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs762010216 | 224 | E>missing | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA3561447 rs752352620 |
225 | K>R | No |
ClinGen ExAC gnomAD |
|
rs763454697 CA3561442 |
229 | I>T | No |
ClinGen ExAC gnomAD |
|
rs1159666601 CA362143458 |
230 | Y>C | No |
ClinGen gnomAD |
|
rs1466030432 CA362143453 |
231 | P>A | No |
ClinGen gnomAD |
|
CA362143449 rs1376425621 |
231 | P>L | No |
ClinGen gnomAD |
|
rs1376425621 RCV001306230 |
231 | P>Q | No |
ClinVar dbSNP |
|
CA3561438 rs373756241 |
235 | R>Q | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
rs761875763 CA3561439 |
235 | R>W | No |
ClinGen ExAC gnomAD |
|
rs914466170 CA132165549 |
236 | D>H | No |
ClinGen TOPMed |
|
CA362143417 rs1445075507 |
237 | Q>K | No |
ClinGen gnomAD |
|
rs1367199640 CA362143407 |
238 | D>G | No |
ClinGen gnomAD |
|
CA362143394 rs1263518949 |
240 | M>V | No |
ClinGen gnomAD |
|
rs1439604724 CA362143381 |
241 | N>I | No |
ClinGen TOPMed |
|
CA3561437 rs768902280 |
242 | L>P | No |
ClinGen ExAC gnomAD |
|
CA362143364 rs1199308714 |
244 | R>K | No |
ClinGen TOPMed |
|
rs755009239 CA132165533 |
247 | V>M | No |
ClinGen Ensembl |
|
CA362143319 rs1344265626 |
251 | I>N | No |
ClinGen gnomAD |
|
TCGA novel | 252 | Q>H | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA362143303 rs1270804203 |
253 | K>R | No |
ClinGen gnomAD |
|
CA362143276 rs1237653766 |
257 | G>S | No |
ClinGen TOPMed |
|
rs975027966 CA132164279 |
263 | Y>C | No |
ClinGen TOPMed |
|
rs1193860375 CA362142875 |
265 | G>D | No |
ClinGen TOPMed |
|
rs1445235842 CA362142878 |
265 | G>S | No |
ClinGen gnomAD |
|
rs1201888546 CA362142864 |
267 | E>K | No |
ClinGen gnomAD |
|
rs1438996793 CA362142859 |
267 | E>V | No |
ClinGen gnomAD |
|
rs767993142 CA3561410 |
269 | W>C | No |
ClinGen ExAC |
|
CA362142837 rs1208805918 |
270 | A>V | No |
ClinGen gnomAD |
|
COSM76409 | 272 | A>S | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA3561409 COSM1581731 rs201224113 |
272 | A>T | haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated 1000Genomes ExAC TOPMed gnomAD |
TCGA novel | 276 | K>Q | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs758799945 CA3561407 |
277 | K>E | No |
ClinGen ExAC gnomAD |
|
rs1554135327 CA362142784 |
278 | N>K | No |
ClinGen Ensembl |
|
rs779200934 CA3561404 |
279 | S>G | No |
ClinGen ExAC gnomAD |
|
CA362142773 rs757814556 |
280 | G>A | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561403 rs757814556 |
280 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
rs764252514 CA3561401 |
282 | P>H | No |
ClinGen ExAC TOPMed gnomAD |
|
rs886042037 RCV000357597 |
283 | L>missing | No |
ClinVar dbSNP |
|
CA3561398 rs150388601 COSM1731116 |
283 | L>F | liver [Cosmic] | No |
ClinGen cosmic curated ESP ExAC TOPMed gnomAD |
rs553059313 CA3561399 |
283 | L>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs1470883147 CA362142748 COSM1436044 |
284 | P>L | Variant assessed as Somatic; MODERATE impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen NCI-TCGA Cosmic cosmic curated NCI-TCGA gnomAD |
TCGA novel | 284 | P>S | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA3561397 rs759780509 |
285 | P>A | No |
ClinGen ExAC gnomAD |
|
rs141428218 CA3561396 |
285 | P>L | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA362142746 rs759780509 |
285 | P>S | No |
ClinGen ExAC gnomAD |
|
CA362142721 rs1223712482 |
289 | P>S | No |
ClinGen TOPMed gnomAD |
|
CA362142712 rs1383055589 |
290 | G>V | No |
ClinGen TOPMed |
|
CA362142706 rs761819354 |
291 | S>* | No |
ClinGen ExAC gnomAD |
|
CA3561394 rs761819354 |
291 | S>L | No |
ClinGen ExAC gnomAD |
|
CA3561393 rs776418736 |
292 | P>L | No |
ClinGen ExAC gnomAD |
|
CA362142701 rs1225915901 |
292 | P>T | No |
ClinGen TOPMed gnomAD |
|
rs1263130107 CA362142672 |
294 | H>R | No |
ClinGen TOPMed |
|
RCV000998492 rs77955907 CA3561392 |
295 | P>L | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
rs995635334 CA132164222 |
296 | G>C | No |
ClinGen Ensembl |
|
CA3561389 rs771735428 |
298 | L>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs745483057 CA3561388 |
301 | D>N | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362142580 rs745483057 |
301 | D>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
rs779254141 CA3561387 |
303 | V>G | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561386 rs757510919 |
305 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362142512 rs1387014767 |
306 | Q>R | No |
ClinGen TOPMed |
|
rs756260892 CA3561383 RCV001321450 |
307 | Q>H | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
CA3561384 rs778141970 |
307 | Q>L | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561382 rs752844424 |
308 | N>Y | No |
ClinGen ExAC gnomAD |
|
COSM1436043 CA3561381 rs200725740 |
309 | A>T | Variant assessed as Somatic; MODERATE impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen NCI-TCGA Cosmic cosmic curated 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
CA362142458 rs1278511262 |
310 | V>G | No |
ClinGen gnomAD |
|
CA3561378 rs765136916 |
310 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362142442 rs1221789004 |
312 | R>G | No |
ClinGen gnomAD |
|
COSM6170636 | 314 | K>M | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA3561377 rs761507282 |
315 | E>K | No |
ClinGen ExAC gnomAD |
|
rs776669729 CA3561376 |
315 | E>V | No |
ClinGen ExAC gnomAD |
|
rs1263506150 CA362142360 |
317 | L>P | No |
ClinGen TOPMed |
|
CA362142345 rs1239019426 |
318 | S>N | No |
ClinGen gnomAD |
|
CA3561374 rs760559564 |
319 | S>R | No |
ClinGen ExAC gnomAD |
|
CA362142301 rs1286973597 |
321 | R>K | No |
ClinGen gnomAD |
|
rs1335953042 CA362142267 |
323 | G>A | No |
ClinGen gnomAD |
|
rs1335953042 CA362142271 |
323 | G>E | No |
ClinGen gnomAD |
|
CA132164178 rs932019598 |
324 | R>Q | No |
ClinGen TOPMed gnomAD |
|
CA3561371 RCV000881376 rs199739437 COSM1543267 |
324 | R>W | lung [Cosmic] | No |
ClinGen cosmic curated ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
rs773866528 CA3561370 |
325 | F>Y | No |
ClinGen ExAC gnomAD |
|
rs771397027 CA3561369 COSM4851494 |
326 | E>Q | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA Cosmic ExAC NCI-TCGA gnomAD |
CA3561368 rs749588401 |
327 | G>D | No |
ClinGen ExAC gnomAD |
|
CA3561366 rs770233178 |
328 | R>C | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs748596484 CA3561365 |
328 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362142201 rs748596484 |
328 | R>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs867577699 CA132164160 |
329 | P>S | No |
ClinGen Ensembl |
|
CA3561362 rs751896430 |
331 | P>L | No |
ClinGen ExAC gnomAD |
|
rs1263900511 CA362142167 |
331 | P>S | No |
ClinGen gnomAD |
|
rs757123247 CA3561360 |
332 | D>N | No |
ClinGen ExAC gnomAD |
|
CA362142128 rs1336013217 |
334 | D>N | No |
ClinGen gnomAD |
|
TCGA novel | 335 | A>G | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA3561356 rs752574042 |
335 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 337 | Q>* | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
CA3561355 rs767075574 |
338 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561337 rs145343254 |
341 | K>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA3561336 rs751057399 |
343 | R>K | No |
ClinGen ExAC gnomAD |
|
CA362141607 rs1490267498 |
343 | R>W | No |
ClinGen gnomAD |
|
CA362141589 rs1581264581 |
345 | R>S | No |
ClinGen Ensembl |
|
rs1361251205 CA362141582 |
346 | P>L | No |
ClinGen gnomAD |
|
TCGA novel | 347 | P>L | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
rs370253866 CA3561334 |
347 | P>S | No |
ClinGen ESP ExAC gnomAD |
|
TCGA novel | 348 | P>T | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA362141568 rs1315029971 COSM3827692 |
349 | R>C | Variant assessed as Somatic; MODERATE impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen NCI-TCGA Cosmic cosmic curated NCI-TCGA gnomAD |
CA362141567 rs1393888000 |
349 | R>H | No |
ClinGen TOPMed |
|
rs772902553 CA3561333 |
350 | R>Q | No |
ClinGen ExAC gnomAD |
|
rs1311003368 CA362141564 |
350 | R>W | No |
ClinGen TOPMed |
|
rs367728698 CA3561331 |
351 | D>Y | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA362141547 rs1407183997 |
352 | M>I | No |
ClinGen gnomAD |
|
CA3561330 rs777326604 |
352 | M>V | No |
ClinGen ExAC gnomAD |
|
rs769306153 CA3561329 |
353 | T>A | No |
ClinGen ExAC gnomAD |
|
rs764014429 CA132162513 |
354 | I>T | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
CA3561328 rs747509586 |
354 | I>V | No |
ClinGen ExAC gnomAD |
|
CA3561301 rs543644156 |
355 | P>S | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
rs145215054 RCV001296502 CA3561300 |
356 | R>Q | No |
ClinGen ClinVar 1000Genomes ESP ExAC TOPMed dbSNP gnomAD |
|
CA362141499 rs1581263832 |
359 | N>T | No |
ClinGen Ensembl |
|
rs753485676 CA3561298 |
361 | P>L | No |
ClinGen ExAC gnomAD |
|
rs1258967003 CA362141487 COSM208059 |
361 | P>S | large_intestine [Cosmic] | No |
ClinGen cosmic curated TOPMed |
rs907665173 CA132161540 |
362 | K>M | No |
ClinGen TOPMed |
|
CA3561295 rs753188415 |
366 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561293 rs759913471 |
367 | P>A | No |
ClinGen ExAC |
|
rs886043480 RCV000387121 |
368 | Q>missing | No |
ClinVar dbSNP |
|
CA132161479 rs917315830 |
368 | Q>R | No |
ClinGen TOPMed |
|
rs774449457 CA3561292 |
369 | V>E | No |
ClinGen ExAC gnomAD |
|
rs763216426 CA3561290 |
370 | E>D | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1048378228 CA132161442 |
370 | E>K | No |
ClinGen TOPMed gnomAD |
|
CA3561291 rs555487078 |
370 | E>V | No |
ClinGen 1000Genomes ExAC gnomAD |
|
COSM1543268 rs1408830667 CA362141413 COSM6170638 |
373 | Y>C | lung Variant assessed as Somatic; MODERATE impact. [Cosmic, NCI-TCGA] | No |
ClinGen cosmic curated NCI-TCGA Cosmic NCI-TCGA TOPMed |
CA132161437 rs765193122 |
373 | Y>H | No |
ClinGen TOPMed |
|
rs768373135 CA3561288 |
375 | T>A | No |
ClinGen ExAC gnomAD |
|
rs779664507 COSM208058 CA3561286 |
377 | A>T | lung Variant assessed as Somatic; MODERATE impact. large_intestine [Cosmic, NCI-TCGA] | No |
ClinGen NCI-TCGA Cosmic cosmic curated ExAC NCI-TCGA gnomAD |
rs1193667826 CA362141385 |
378 | E>K | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
TCGA novel | 379 | F>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
COSM3614196 | 380 | Q>* | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs150648145 CA3561284 |
381 | T>A | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA362141351 rs1275846164 |
382 | T>I | No |
ClinGen gnomAD |
|
COSM3696842 | 386 | G>D | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA3561280 rs777452588 |
386 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362141285 rs1326915275 |
392 | G>D | No |
ClinGen gnomAD |
|
rs760096210 CA3561276 |
392 | G>R | No |
ClinGen ExAC gnomAD |
|
rs760096210 CA3561277 |
392 | G>S | No |
ClinGen ExAC gnomAD |
|
rs369123624 CA3561273 |
396 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
COSM3853742 | 397 | V>A | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs767413669 CA3561251 |
399 | E>K | No |
ClinGen ExAC TOPMed gnomAD |
|
rs866340183 CA132184809 |
403 | S>G | No |
ClinGen Ensembl |
|
rs759376561 CA3561250 |
404 | G>S | No |
ClinGen ExAC gnomAD |
|
rs1561891724 CA362148906 CA362148904 |
405 | W>C | No |
ClinGen Ensembl |
|
CA3561249 rs202063864 |
406 | W>G | No |
ClinGen ExAC gnomAD |
|
CA3561246 rs201017228 |
407 | Y>* | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs749200235 CA3561247 |
407 | Y>C | No |
ClinGen ExAC gnomAD |
|
CA3561248 rs771017390 |
407 | Y>D | No |
ClinGen ExAC TOPMed gnomAD |
|
CA132184798 rs771017390 |
407 | Y>N | No |
ClinGen ExAC TOPMed gnomAD |
|
rs557204946 CA132184778 |
408 | I>F | No |
ClinGen 1000Genomes gnomAD |
|
rs557204946 CA132184782 |
408 | I>L | No |
ClinGen 1000Genomes gnomAD |
|
rs557204946 CA362148876 |
408 | I>V | No |
ClinGen 1000Genomes gnomAD |
|
rs780672371 CA3561243 |
409 | Q>* | No |
ClinGen ExAC |
|
CA3561244 rs780672371 |
409 | Q>E | No |
ClinGen ExAC |
|
rs747393323 CA3561242 |
409 | Q>L | No |
ClinGen ExAC |
|
rs747393323 CA3561241 |
409 | Q>P | No |
ClinGen ExAC |
|
CA3561239 rs758908295 |
410 | I>T | No |
ClinGen ExAC gnomAD |
|
rs780354521 CA3561240 |
410 | I>V | No |
ClinGen ExAC gnomAD |
|
rs750836611 CA3561238 |
413 | K>E | No |
ClinGen ExAC gnomAD |
|
rs1581259758 CA362148768 |
415 | G>A | No |
ClinGen Ensembl |
|
CA3561236 rs369606134 |
418 | P>L | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3561235 rs369606134 |
418 | P>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA362148682 rs1420591406 |
422 | I>T | No |
ClinGen TOPMed |
|
rs376004348 CA3561232 |
426 | K>E | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3561230 rs763001271 |
428 | T>A | No |
ClinGen ExAC |
|
rs773015718 CA3561229 |
428 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
COSM3853741 | 429 | S>G | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA3561224 rs534796248 |
431 | A>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs142779141 CA362148550 |
431 | A>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs142779141 CA3561225 |
431 | A>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3561223 rs534796248 |
431 | A>V | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs1487056720 CA362148536 |
432 | S>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed |
CA3561221 rs367686820 |
433 | R>S | No |
ClinGen ESP ExAC gnomAD |
|
CA3561219 rs753887482 |
434 | P>S | No |
ClinGen ExAC gnomAD |
|
CA3561218 rs777964124 |
436 | F>S | No |
ClinGen ExAC gnomAD |
|
CA132184626 rs996145468 |
438 | A>T | No |
ClinGen TOPMed |
|
TCGA novel | 439 | P>T | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
COSM270137 rs1268362927 CA362148447 |
441 | P>L | Variant assessed as Somatic; MODERATE impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen NCI-TCGA Cosmic cosmic curated NCI-TCGA gnomAD |
TCGA novel | 442 | H>Y | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA132184593 COSM1310968 rs138949033 |
443 | E>K | Variant assessed as Somatic; MODERATE impact. urinary_tract [NCI-TCGA, Cosmic] | No |
ClinGen NCI-TCGA Cosmic cosmic curated ESP NCI-TCGA TOPMed gnomAD |
rs765107395 CA3561212 |
446 | Q>H | No |
ClinGen ExAC gnomAD |
|
CA3561210 rs141993560 |
448 | R>Q | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA132184582 rs1004143265 |
450 | G>W | No |
ClinGen gnomAD |
|
CA362148339 rs1303533293 |
451 | E>K | No |
ClinGen TOPMed |
|
rs1243057853 CA362148300 |
454 | A>G | No |
ClinGen TOPMed gnomAD |
|
rs1243057853 CA362148298 |
454 | A>V | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
TCGA novel | 456 | E>D | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs779290254 CA3561204 |
457 | N>T | No |
ClinGen ExAC gnomAD |
|
rs538635661 CA362148239 |
459 | T>K | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA3561203 rs538635661 |
459 | T>M | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA362148228 rs1230324305 |
460 | G>D | No |
ClinGen gnomAD |
|
rs1272297626 CA362148232 |
460 | G>S | No |
ClinGen gnomAD |
|
rs1255107304 CA362148221 |
461 | S>G | No |
ClinGen gnomAD |
|
CA3561201 rs778016569 |
461 | S>I | No |
ClinGen ExAC gnomAD |
|
CA3561199 rs753004133 |
462 | E>K | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs550449429 CA3561198 |
464 | T>M | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
CA3561195 rs530268917 |
466 | P>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs530268917 CA362148153 |
466 | P>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
COSM3919698 | 467 | S>F | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA132184471 rs144424788 |
468 | R>P | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA3561192 rs753761917 |
468 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362148125 rs1425655297 |
469 | P>S | No |
ClinGen TOPMed gnomAD |
|
rs1326389699 CA362148116 |
470 | L>V | No |
ClinGen TOPMed gnomAD |
|
rs1257006846 CA362148108 |
471 | P>A | No |
ClinGen gnomAD |
|
CA362148087 rs201664516 |
472 | D>E | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA3561189 rs760147022 |
472 | D>H | No |
ClinGen ExAC gnomAD |
|
rs776911752 CA3561187 |
473 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561186 rs759190450 |
473 | A>V | No |
ClinGen ExAC gnomAD |
|
rs528214105 CA3561185 |
474 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA362148071 rs1176856627 |
474 | P>S | No |
ClinGen TOPMed |
|
CA362148030 rs1173526820 |
476 | G>A | No |
ClinGen TOPMed |
|
CA362148032 rs1242577988 |
476 | G>C | No |
ClinGen gnomAD |
|
rs748257187 CA3561181 |
478 | M>I | No |
ClinGen ExAC TOPMed gnomAD |
|
rs770039296 CA3561182 |
478 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
CA132184393 rs760627976 |
478 | M>R | No |
ClinGen Ensembl |
|
CA362147974 rs781378826 |
480 | S>* | No |
ClinGen ExAC TOPMed gnomAD |
|
COSM3429286 CA3561180 rs781378826 |
480 | S>L | Variant assessed as Somatic; MODERATE impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen NCI-TCGA Cosmic cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
rs747195368 CA3561178 |
481 | G>R | No |
ClinGen ExAC gnomAD |
|
COSM6170639 | 481 | G>V | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA362147937 rs1410861721 |
483 | P>L | No |
ClinGen gnomAD |
|
rs778628862 CA3561177 |
484 | W>R | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 487 | D>N | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA362147873 COSM449332 rs1459932052 |
488 | W>C | Variant assessed as Somatic; MODERATE impact. breast [NCI-TCGA, Cosmic] | No |
ClinGen NCI-TCGA Cosmic cosmic curated NCI-TCGA gnomAD |
rs200664799 CA132184349 |
488 | W>R | No |
ClinGen 1000Genomes |
|
CA362147858 rs1369540626 |
490 | G>S | No |
ClinGen TOPMed gnomAD |
|
rs886060422 CA362147842 |
491 | S>I | No |
ClinGen TOPMed gnomAD |
|
CA3561175 rs753812941 |
492 | K>T | No |
ClinGen ExAC gnomAD |
|
CA132184326 rs945034807 |
493 | D>G | No |
ClinGen Ensembl |
|
CA362147794 rs1490241569 |
494 | V>A | No |
ClinGen gnomAD |
|
rs752236934 CA3561172 |
498 | A>V | No |
ClinGen ExAC gnomAD |
|
CA3561171 rs766988323 |
499 | S>P | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 500 | S>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA3561170 rs759125971 CA362147744 |
501 | D>E | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1237708560 CA362147741 |
502 | M>V | No |
ClinGen TOPMed gnomAD |
|
CA132184314 rs947515698 |
503 | S>P | No |
ClinGen TOPMed |
|
CA3561169 rs774043886 |
504 | A>V | No |
ClinGen ExAC gnomAD |
|
CA3561167 rs146888830 |
505 | S>* | No |
ClinGen ESP ExAC gnomAD |
|
CA3561166 rs146888830 |
505 | S>L | No |
ClinGen ESP ExAC gnomAD |
|
CA362147711 rs1344439478 |
507 | G>D | No |
ClinGen gnomAD |
|
rs748596626 CA3561164 |
509 | E>K | No |
ClinGen ExAC gnomAD |
|
rs776585646 CA3561162 |
512 | S>L | No |
ClinGen ExAC gnomAD |
|
CA362147667 rs1266749154 |
513 | D>E | No |
ClinGen TOPMed |
|
rs563480653 CA3561161 |
514 | P>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA3561160 rs563480653 |
514 | P>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA362147665 rs1477433783 |
514 | P>S | No |
ClinGen TOPMed gnomAD |
|
rs62621449 CA362147660 |
515 | D>Y | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA362147653 CA362147654 rs1480272069 |
516 | M>L | No |
ClinGen TOPMed gnomAD |
|
CA362147652 rs1480272069 |
516 | M>V | No |
ClinGen TOPMed gnomAD |
|
rs921050849 CA132184264 |
517 | E>G | No |
ClinGen Ensembl |
|
CA362147617 rs1427448254 |
520 | P>L | No |
ClinGen gnomAD |
|
CA3561157 rs574600369 |
521 | S>G | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs777505150 CA3561156 |
522 | L>F | No |
ClinGen ExAC gnomAD |
|
COSM4831331 | 522 | L>V | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA132184235 rs534476356 |
525 | R>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA3561153 rs534476356 |
525 | R>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs752576211 CA3561154 |
525 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1208801614 CA362147582 |
527 | E>* | No |
ClinGen gnomAD |
|
rs148729326 CA132184226 |
530 | I>M | No |
ClinGen ESP |
|
rs974799797 CA132184229 |
530 | I>V | No |
ClinGen TOPMed gnomAD |
|
CA3561151 rs751214999 |
532 | S>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
rs184298693 CA362147536 |
533 | E>D | No |
ClinGen 1000Genomes gnomAD |
|
CA362147541 rs1217978741 |
533 | E>K | No |
ClinGen TOPMed |
|
TCGA novel | 538 | E>* | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
rs368451759 CA132184171 |
538 | E>A | No |
ClinGen ESP TOPMed |
|
rs199704139 CA3561145 |
539 | R>G | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362147505 rs886239248 |
539 | R>P | No |
ClinGen TOPMed |
|
CA3561144 COSM1581730 rs199704139 |
539 | R>W | Variant assessed as Somatic; MODERATE impact. haematopoietic_and_lymphoid_tissue [NCI-TCGA, Cosmic] | No |
ClinGen NCI-TCGA Cosmic cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
CA362147503 rs141493467 |
540 | E>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs141493467 CA3561142 |
540 | E>Q | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA3561141 rs775382985 |
541 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362147495 rs1378037423 COSM267418 |
541 | R>W | Variant assessed as Somatic; MODERATE impact. large_intestine [NCI-TCGA, Cosmic] | No |
ClinGen NCI-TCGA Cosmic cosmic curated NCI-TCGA TOPMed gnomAD |
CA362147489 rs1561891122 |
542 | E>A | No |
ClinGen Ensembl |
|
rs772313508 CA3561140 |
543 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1026559997 CA362147483 |
543 | R>W | No |
ClinGen TOPMed gnomAD |
|
rs538706044 COSM3853739 CA3561136 |
546 | T>M | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA Cosmic 1000Genomes ExAC NCI-TCGA TOPMed gnomAD |
CA3561137 rs746024003 |
546 | T>S | No |
ClinGen ExAC gnomAD |
|
CA362147457 rs1345246710 |
547 | E>G | No |
ClinGen gnomAD |
|
CA3561134 rs748103641 |
548 | Q>H | No |
ClinGen ExAC gnomAD |
|
rs372106585 CA3561133 |
549 | L>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1452043878 CA362147440 |
550 | R>Q | No |
ClinGen gnomAD |
|
rs374594864 CA3561132 |
550 | R>W | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
CA362147434 rs1336222074 |
551 | G>D | No |
ClinGen gnomAD |
|
rs751108167 CA3561131 |
552 | P>A | No |
ClinGen ExAC gnomAD |
|
rs1336298982 CA362147421 |
553 | T>I | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA TOPMed gnomAD |
CA362147426 rs1581259198 |
553 | T>P | No |
ClinGen Ensembl |
|
rs1167791216 CA362147418 |
554 | P>H | No |
ClinGen gnomAD |
|
CA3561130 rs779361000 |
554 | P>S | No |
ClinGen ExAC gnomAD |
|
CA362147414 rs1427512012 |
555 | K>E | No |
ClinGen gnomAD |
|
CA3561128 rs139306925 |
557 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3561126 rs536952235 |
558 | G>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs764684802 CA3561124 |
558 | G>V | No |
ClinGen ExAC gnomAD |
|
CA3561122 rs775645752 COSM226152 |
559 | V>M | lung NS Variant assessed as Somatic; MODERATE impact. [Cosmic, NCI-TCGA] | No |
ClinGen NCI-TCGA Cosmic cosmic curated ExAC NCI-TCGA TOPMed gnomAD |
COSM449331 | 560 | I>M | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs147475342 CA3561121 |
562 | P>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ESP ExAC NCI-TCGA TOPMed gnomAD |
RCV000729128 rs147475342 CA132183948 |
562 | P>Q | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
CA3561118 rs769620312 |
563 | M>I | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA gnomAD |
CA3561119 rs774555263 |
563 | M>T | No |
ClinGen ExAC gnomAD |
|
CA362147357 rs1581259130 |
564 | M>I | No |
ClinGen Ensembl |
|
rs747957440 CA3561117 |
564 | M>V | No |
ClinGen ExAC gnomAD |
|
CA362147349 rs1354820151 COSM1620055 |
565 | P>L | liver haematopoietic_and_lymphoid_tissue [Cosmic] | No |
ClinGen cosmic curated gnomAD |
rs1245592552 CA362147346 |
566 | A>S | No |
ClinGen gnomAD |
|
rs768640465 CA3561115 |
568 | H>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
rs567930218 CA3561114 |
569 | I>F | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs757975252 CA3561112 |
570 | P>A | No |
ClinGen ExAC gnomAD |
|
CA362147321 rs757975252 |
570 | P>T | No |
ClinGen ExAC gnomAD |
|
rs111230322 CA3561110 |
571 | P>Q | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs754260300 CA3561108 |
572 | A>T | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362147306 rs147231839 |
573 | R>P | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
RCV001302830 rs147231839 CA3561107 |
573 | R>Q | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs201601282 CA132183862 |
573 | R>W | No |
ClinGen TOPMed gnomAD |
|
CA3561106 rs761259375 |
577 | R>K | No |
ClinGen ExAC gnomAD |
|
CA362147280 rs1410806750 |
577 | R>W | No |
ClinGen TOPMed gnomAD |
|
COSM3614194 | 578 | P>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs753133269 CA3561105 |
581 | K>R | No |
ClinGen ExAC gnomAD |
|
rs1253039150 CA362147242 |
583 | D>N | No |
ClinGen gnomAD |
|
rs1222205001 CA362147218 |
586 | R>G | No |
ClinGen gnomAD |
|
CA3561103 rs759584597 |
591 | K>R | No |
ClinGen ExAC gnomAD |
|
CA3561102 rs774608699 |
592 | N>D | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 592 | N>M | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
CA3561100 rs763014228 |
594 | M>I | No |
ClinGen ExAC gnomAD |
|
rs766615424 CA362147163 |
594 | M>L | No |
ClinGen ExAC TOPMed gnomAD |
|
COSM284964 | 594 | M>R | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA132183773 rs1026928474 |
594 | M>T | No |
ClinGen Ensembl |
|
CA3561101 rs766615424 |
594 | M>V | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362147122 rs1561890940 |
600 | H>Y | No |
ClinGen Ensembl |
|
COSM737701 | 601 | K>N | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs559517729 CA362147113 |
601 | K>R | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs559517729 CA3561098 |
601 | K>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs747032111 CA3561097 |
602 | V>A | No |
ClinGen ExAC gnomAD |
|
CA362147109 rs1288815002 |
602 | V>I | No |
ClinGen gnomAD |
|
rs1325396642 CA362147085 |
605 | K>N | No |
ClinGen gnomAD |
|
CA362147087 rs1348056541 |
605 | K>R | No |
ClinGen gnomAD |
|
rs568928528 CA132183745 |
607 | V>L | No |
ClinGen Ensembl |
|
rs1387336836 CA362147068 |
608 | K>* | No |
ClinGen gnomAD |
|
rs775536390 CA362147044 |
611 | N>I | No |
ClinGen ExAC gnomAD |
|
rs775536390 CA3561096 |
611 | N>S | No |
ClinGen ExAC gnomAD |
|
rs775536390 CA362147045 |
611 | N>T | No |
ClinGen ExAC gnomAD |
|
CA3561095 rs756935357 |
612 | L>I | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561094 rs745393171 |
613 | R>Q | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
CA132183717 rs958705626 |
613 | R>W | No |
ClinGen TOPMed gnomAD |
|
COSM3614192 | 614 | P>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA132183695 rs1002957814 |
614 | P>R | No |
ClinGen Ensembl |
|
rs778527295 CA3561093 |
614 | P>T | No |
ClinGen ExAC gnomAD |
|
rs748835403 CA3561090 |
615 | I>V | No |
ClinGen ExAC gnomAD |
|
COSM3614191 | 616 | S>F | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs778260997 CA3561089 |
617 | K>R | No |
ClinGen ExAC gnomAD |
|
rs756433282 CA3561088 |
618 | S>C | No |
ClinGen ExAC gnomAD |
|
rs1581258914 CA362146986 |
621 | D>A | No |
ClinGen Ensembl |
|
CA362146985 rs1210657401 |
621 | D>E | No |
ClinGen gnomAD |
|
rs753246607 CA3561087 |
623 | P>L | No |
ClinGen ExAC gnomAD |
|
CA362146976 rs1330100059 |
623 | P>S | No |
ClinGen gnomAD |
|
TCGA novel | 624 | E>* | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
CA362146969 rs1561890845 |
624 | E>G | No |
ClinGen Ensembl |
|
COSM3429285 | 625 | E>K | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA362146938 rs1364366287 |
628 | D>E | No |
ClinGen gnomAD |
|
CA3561084 rs551814886 |
628 | D>V | No |
ClinGen ExAC TOPMed gnomAD |
|
CA132183638 rs1020456906 |
628 | D>Y | No |
ClinGen Ensembl |
|
rs751639524 CA3561083 |
629 | A>V | No |
ClinGen ExAC gnomAD |
|
rs141783206 CA3561080 |
630 | T>I | No |
ClinGen ESP ExAC TOPMed |
|
rs552297069 CA3561081 |
630 | T>P | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA362146931 rs552297069 |
630 | T>S | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA362146929 rs141783206 |
630 | T>S | No |
ClinGen ESP ExAC TOPMed |
|
rs1561890816 CA362146923 |
631 | P>L | No |
ClinGen Ensembl |
|
COSM4894847 | 631 | P>S | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs974452914 CA132183622 |
632 | Q>P | No |
ClinGen TOPMed gnomAD |
|
rs763988022 CA3561079 |
633 | N>S | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 635 | F>C | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs1174937089 CA362146880 |
637 | K>N | No |
ClinGen TOPMed |
|
CA3561078 rs201610155 |
637 | K>R | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
CA362146875 rs1192140778 |
638 | S>F | No |
ClinGen gnomAD |
|
CA3561076 rs563300243 |
639 | R>K | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA362146868 rs563300243 |
639 | R>T | No |
ClinGen 1000Genomes ExAC gnomAD |
|
TCGA novel | 641 | Q>H | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs1255649132 CA362146831 |
642 | V>G | No |
ClinGen TOPMed gnomAD |
|
rs774019142 CA3561074 |
642 | V>I | No |
ClinGen ExAC gnomAD |
|
CA3561073 rs770323424 |
646 | P>S | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 646 | P>T | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs749007960 CA3561072 |
647 | A>P | No |
ClinGen ExAC TOPMed gnomAD |
|
CA132183570 rs753591975 |
648 | P>L | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 648 | P>S | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA362146747 rs1403821737 |
651 | K>Q | No |
ClinGen TOPMed |
|
CA3561071 rs148050566 |
652 | T>K | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
COSM284963 | 654 | P>S | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs1376414024 CA362146681 |
655 | P>R | No |
ClinGen TOPMed |
|
TCGA novel | 658 | E>D | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs1365359711 CA362146641 |
658 | E>K | No |
ClinGen gnomAD |
|
rs781465468 CA3561066 |
659 | D>A | No |
ClinGen ExAC gnomAD |
|
rs1301722100 CA362146624 |
659 | D>N | No |
ClinGen gnomAD |
|
rs148816682 CA3561063 |
663 | I>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs758405465 CA3561062 |
664 | C>R | No |
ClinGen ExAC gnomAD |
|
rs1284013334 CA362146545 |
664 | C>Y | No |
ClinGen Ensembl |
|
CA3561061 rs779604984 |
665 | N>H | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561060 rs144252446 |
665 | N>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs779604984 CA132183512 |
665 | N>Y | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561059 rs762061325 |
666 | L>F | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362146531 rs1180186910 |
666 | L>R | No |
ClinGen gnomAD |
|
CA362146530 rs1484393279 |
667 | R>G | No |
ClinGen gnomAD |
|
CA3561057 rs767370493 |
669 | K>E | No |
ClinGen ExAC TOPMed gnomAD |
|
COSM72627 | 671 | R>T | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
RCV000896886 rs571908508 CA3561055 |
673 | A>V | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
rs1308004094 CA362146454 |
678 | K>E | No |
ClinGen gnomAD |
|
rs762353363 CA3561053 |
679 | S>F | No |
ClinGen ExAC TOPMed gnomAD |
|
rs919807403 CA132183432 |
680 | L>V | No |
ClinGen TOPMed |
|
rs1350586808 CA362146425 |
682 | D>G | No |
ClinGen TOPMed gnomAD |
|
CA132183429 rs767940934 |
682 | D>H | No |
ClinGen Ensembl |
|
rs138477347 CA3561051 |
684 | E>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs747754861 CA3561050 |
685 | G>A | No |
ClinGen ExAC gnomAD |
|
rs1581258694 CA362146394 |
687 | Q>R | No |
ClinGen Ensembl |
|
rs1431020262 CA362146382 |
689 | V>L | No |
ClinGen gnomAD |
|
rs1239455539 CA362146376 |
690 | G>R | No |
ClinGen Ensembl |
|
rs755625941 CA3561049 |
691 | G>C | No |
ClinGen ExAC TOPMed gnomAD |
|
rs768981267 CA132183371 |
691 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362146371 rs755625941 |
691 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561048 rs768981267 |
691 | G>V | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1414837054 CA362146353 |
694 | V>M | No |
ClinGen gnomAD |
|
CA3561045 rs758884359 |
695 | A>V | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1482180162 CA362146334 |
697 | S>G | No |
ClinGen gnomAD |
|
rs1249435906 CA362146325 |
698 | R>* | No |
ClinGen TOPMed gnomAD |
|
CA132183299 rs747456932 |
699 | S>N | No |
ClinGen TOPMed gnomAD |
|
COSM4476902 | 702 | P>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA362146297 rs1441376686 |
702 | P>R | No |
ClinGen gnomAD |
|
rs779011230 CA3561043 |
703 | G>E | No |
ClinGen ExAC TOPMed gnomAD |
|
COSM6170640 | 704 | E>* | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs1581258624 CA362146272 |
706 | P>R | No |
ClinGen Ensembl |
|
rs757574607 CA3561042 |
707 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561040 rs545491323 |
708 | R>C | No |
ClinGen 1000Genomes ExAC gnomAD |
|
CA3561041 rs545491323 |
708 | R>G | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs759399077 CA3561039 |
708 | R>H | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs201406507 CA3561037 |
709 | A>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs140679646 CA3561036 RCV000895787 |
710 | Q>E | No |
ClinGen ClinVar 1000Genomes ExAC TOPMed dbSNP gnomAD |
|
CA362146255 rs1478058159 |
710 | Q>R | No |
ClinGen gnomAD |
|
rs769329415 CA3561034 |
711 | D>N | No |
ClinGen ExAC gnomAD |
|
rs761496016 CA3561033 |
712 | R>G | No |
ClinGen ExAC gnomAD |
|
rs776263829 CA3561032 |
712 | R>S | No |
ClinGen ExAC gnomAD |
|
rs200089592 CA3561031 |
713 | T>M | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs1419415861 CA362146215 |
716 | Q>P | No |
ClinGen gnomAD |
|
rs778908491 CA3561026 |
718 | G>D | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3561027 rs746336600 |
718 | G>S | No |
ClinGen ExAC gnomAD |
|
rs1164820181 CA362146197 |
719 | L>F | No |
ClinGen TOPMed |
|
COSM72626 | 725 | S>A | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA3561024 rs754177459 |
725 | S>F | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs536215420 CA132183206 |
726 | C>R | No |
ClinGen 1000Genomes |
|
CA362146146 rs1033641429 |
726 | C>W | No |
ClinGen gnomAD |
|
rs778124912 CA3561023 |
727 | R>T | No |
ClinGen ExAC gnomAD |
|
rs756344289 CA3561022 |
728 | A>P | No |
ClinGen ExAC gnomAD |
|
COSM3614189 | 728 | A>V | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA3561021 rs766153965 |
730 | P>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362146117 rs1299614380 |
731 | R>S | No |
ClinGen TOPMed gnomAD |
|
rs146845764 CA132183112 |
733 | A>G | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs146845764 CA3561018 |
733 | A>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA362146100 rs1372348315 |
734 | K>T | No |
ClinGen gnomAD |
|
CA3561017 rs143940296 |
737 | D>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1318164349 CA362146060 |
737 | D>Y | No |
ClinGen TOPMed |
|
CA362146048 rs761301784 |
738 | P>A | No |
ClinGen ExAC gnomAD |
|
CA362146040 rs1391152874 |
738 | P>R | No |
ClinGen gnomAD |
|
CA3561016 rs761301784 |
738 | P>T | No |
ClinGen ExAC gnomAD |
|
COSM4844666 | 740 | S>C | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs1376900094 CA362145994 |
742 | S>N | No |
ClinGen gnomAD |
|
rs1039344303 CA362145988 |
742 | S>R | No |
ClinGen TOPMed gnomAD |
|
rs763742230 CA3561013 |
743 | V>A | No |
ClinGen ExAC gnomAD |
|
rs202052552 CA3561012 |
744 | P>S | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 745 | V>F | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs1463130620 CA362145965 |
745 | V>I | No |
ClinGen gnomAD |
|
COSM6170641 | 746 | P>S | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
COSM106655 CA132183055 rs149362550 |
748 | Q>* | skin [Cosmic] | No |
ClinGen cosmic curated TOPMed |
rs775740478 CA3561011 |
748 | Q>L | No |
ClinGen ExAC gnomAD |
|
rs1348936415 CA362145897 |
750 | A>D | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen Ensembl NCI-TCGA |
CA362145903 rs1205404871 |
750 | A>T | No |
ClinGen gnomAD |
|
CA132183046 rs1046822852 |
751 | P>S | No |
ClinGen Ensembl |
|
rs772460017 CA3561010 |
752 | Q>P | No |
ClinGen ExAC gnomAD |
|
rs373626183 CA3561009 |
753 | Q>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs774915810 CA3561008 |
754 | R>I | No |
ClinGen ExAC gnomAD |
|
rs774915810 CA362145848 |
754 | R>K | No |
ClinGen ExAC gnomAD |
|
rs749390533 CA3561006 |
755 | P>L | No |
ClinGen ExAC gnomAD |
|
rs908905584 CA132183012 |
755 | P>S | No |
ClinGen TOPMed |
|
rs372424713 CA3561005 |
757 | V>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs867924828 CA132182984 COSM3919697 |
758 | P>S | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA Cosmic NCI-TCGA gnomAD |
TCGA novel | 759 | P>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs1319032853 CA362145797 |
759 | P>S | No |
ClinGen gnomAD |
|
rs199590644 CA3561004 RCV001323866 |
760 | R>C | No |
ClinGen ClinVar ExAC TOPMed dbSNP gnomAD |
|
CA3561003 rs748349654 |
760 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
TCGA novel | 760 | R>P | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
CA132182958 rs937234068 |
761 | R>G | No |
ClinGen TOPMed gnomAD |
|
rs779758365 CA3561002 |
762 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1436276736 CA362145749 |
763 | P>L | No |
ClinGen TOPMed gnomAD |
|
rs200957245 CA3561000 |
764 | P>L | No |
ClinGen 1000Genomes ExAC gnomAD |
|
rs765174539 CA3560999 |
765 | P>A | No |
ClinGen ExAC gnomAD |
|
rs1391522230 CA362145739 |
765 | P>L | No |
ClinGen gnomAD |
|
rs369009969 CA3560998 |
768 | T>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1581258405 CA362145722 |
768 | T>P | No |
ClinGen Ensembl |
|
CA362145710 rs1383409923 |
769 | S>Y | No |
ClinGen TOPMed |
|
rs753378126 COSM5912339 CA3560997 |
770 | S>L | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA Cosmic ExAC NCI-TCGA TOPMed gnomAD |
rs992005890 CA132182935 |
773 | R>G | No |
ClinGen TOPMed |
|
rs775175536 CA3560994 |
774 | P>L | No |
ClinGen ExAC TOPMed gnomAD |
|
rs753041286 CA3560995 |
774 | P>T | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362145680 rs1259684593 |
775 | L>F | No |
ClinGen TOPMed |
|
CA362145678 rs1226897553 |
775 | L>P | No |
ClinGen gnomAD |
|
CA3560992 rs759930390 |
776 | P>S | No |
ClinGen ExAC TOPMed gnomAD |
|
COSM263639 | 776 | P>T | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA3560991 rs377423936 |
778 | V>I | No |
ClinGen ESP ExAC gnomAD |
|
rs771565324 CA3560990 |
779 | R>T | No |
ClinGen ExAC gnomAD |
|
rs373458298 CA3560988 |
782 | Q>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3560987 rs769967641 |
783 | C>Y | No |
ClinGen ExAC gnomAD |
|
rs142818364 CA3560986 |
787 | E>K | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs745682374 CA3560983 |
789 | R>K | No |
ClinGen ExAC gnomAD |
|
rs1158134285 CA362145578 |
790 | A>T | No |
ClinGen gnomAD |
|
CA362145573 rs1305865410 |
790 | A>V | No |
ClinGen Ensembl |
|
CA3560982 rs778640595 |
791 | A>S | No |
ClinGen ExAC gnomAD |
|
CA132182825 rs868544790 |
792 | P>L | No |
ClinGen Ensembl |
|
rs201261081 CA3560981 |
793 | T>I | No |
ClinGen ExAC gnomAD |
|
rs753753762 CA3560980 |
794 | P>R | No |
ClinGen ExAC gnomAD |
|
CA3560979 rs777304919 COSM1672130 |
796 | R>C | large_intestine [Cosmic] | No |
ClinGen cosmic curated ExAC TOPMed gnomAD |
rs755644957 CA3560978 |
796 | R>H | No |
ClinGen ExAC TOPMed gnomAD |
|
rs375700951 CA132182764 |
797 | A>T | No |
ClinGen ESP TOPMed gnomAD |
|
rs759973468 RCV000350399 |
799 | L>missing | No |
ClinVar dbSNP |
|
rs1354278433 CA362145513 |
802 | P>S | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA gnomAD |
CA3560973 rs372034716 |
806 | P>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3560972 rs372034716 |
806 | P>T | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3560971 rs766796858 |
807 | F>L | No |
ClinGen ExAC gnomAD |
|
rs763599720 CA3560970 |
807 | F>Y | No |
ClinGen ExAC gnomAD |
|
CA362145461 rs1407695766 |
810 | N>S | No |
ClinGen gnomAD |
|
rs369069648 CA3560969 |
811 | S>F | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
rs1329401943 CA362145446 |
812 | L>F | No |
ClinGen TOPMed gnomAD |
|
TCGA novel | 813 | G>E | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
rs376893926 CA3560968 CA3560967 |
813 | G>R | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
TCGA novel | 814 | G>A | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
rs776509593 CA362145437 |
814 | G>D | No |
ClinGen ExAC gnomAD |
|
CA362145438 rs1234785897 |
814 | G>S | No |
ClinGen TOPMed |
|
CA3560966 rs776509593 |
814 | G>V | No |
ClinGen ExAC gnomAD |
|
rs747186088 CA3560962 |
815 | Q>H | No |
ClinGen ExAC gnomAD |
|
TCGA novel | 815 | Q>P | Variant assessed as Somatic; HIGH impact. [NCI-TCGA] | No | NCI-TCGA |
CA3560963 rs902037757 |
815 | Q>R | No |
ClinGen TOPMed gnomAD |
|
CA3560961 rs778730283 |
817 | D>G | No |
ClinGen ExAC TOPMed gnomAD |
|
rs777672562 CA3560958 |
818 | T>K | No |
ClinGen ExAC TOPMed gnomAD |
|
rs777672562 CA3560959 |
818 | T>M | No |
ClinGen ExAC TOPMed gnomAD |
|
rs770680733 CA3560960 |
818 | T>S | No |
ClinGen ExAC gnomAD |
|
rs752253034 COSM367410 CA362145411 |
819 | R>* | lung [Cosmic] | No |
ClinGen cosmic curated ExAC gnomAD |
rs752253034 CA3560956 |
819 | R>G | No |
ClinGen ExAC gnomAD |
|
CA132182672 rs993937418 |
820 | G>D | No |
ClinGen TOPMed |
|
rs1266432035 CA362145364 |
827 | W>R | No |
ClinGen gnomAD |
|
CA362145349 rs1199714554 |
829 | T>A | No |
ClinGen TOPMed |
|
CA3560951 rs763401726 |
830 | G>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs1279892453 CA362145333 |
831 | K>N | No |
ClinGen gnomAD |
|
COSM737702 | 831 | K>R | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA362145317 rs750761356 |
833 | G>A | No |
ClinGen ExAC gnomAD |
|
CA3560950 rs750761356 |
833 | G>E | No |
ClinGen ExAC gnomAD |
|
CA132182647 rs1038203145 |
834 | E>K | No |
ClinGen Ensembl |
|
rs1327344968 CA362145300 |
836 | R>G | No |
ClinGen gnomAD |
|
TCGA novel | 837 | E>G | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA3560949 rs765781253 |
839 | A>V | No |
ClinGen ExAC gnomAD |
|
rs1402062022 CA362145260 |
842 | A>T | No |
ClinGen TOPMed gnomAD |
|
rs1409224266 CA362145255 |
842 | A>V | No |
ClinGen gnomAD |
|
COSM5908570 | 843 | S>F | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs775684253 CA3560945 |
845 | P>H | No |
ClinGen ExAC gnomAD |
|
rs775684253 CA3560944 |
845 | P>L | No |
ClinGen ExAC gnomAD |
|
rs373421449 CA3560943 |
846 | N>S | No |
ClinGen ExAC TOPMed gnomAD |
|
rs149498667 CA3560940 |
848 | D>E | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs1210870233 CA362145222 |
848 | D>G | No |
ClinGen gnomAD |
|
CA3560941 rs147195586 |
848 | D>N | No |
ClinGen 1000Genomes ESP ExAC TOPMed gnomAD |
|
rs138100885 CA3560938 |
849 | G>S | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
COSM1664152 CA362145209 rs1344766587 |
851 | K>Q | kidney [Cosmic] | No |
ClinGen cosmic curated TOPMed |
rs1342787610 CA362145184 |
854 | L>S | No |
ClinGen gnomAD |
|
CA362145174 rs1441026094 |
855 | Y>* | No |
ClinGen gnomAD |
|
rs919197314 CA132182536 |
855 | Y>C | No |
ClinGen TOPMed |
|
rs919197314 CA362145176 |
855 | Y>F | No |
ClinGen TOPMed |
|
CA362145164 rs1317918408 |
857 | A>G | No |
ClinGen gnomAD |
|
CA3560935 RCV000728915 rs150789109 |
857 | A>S | No |
ClinGen ClinVar ESP ExAC TOPMed dbSNP gnomAD |
|
rs1317918408 CA362145163 |
857 | A>V | No |
ClinGen gnomAD |
|
CA3560933 rs758060713 |
858 | V>M | No |
ClinGen ExAC TOPMed gnomAD |
|
rs371447542 CA132182510 |
859 | A>V | No |
ClinGen ESP TOPMed gnomAD |
|
rs765472301 CA3560931 |
860 | D>N | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
rs367711319 CA362145144 |
861 | F>I | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
CA3560930 rs367711319 |
861 | F>V | No |
ClinGen ESP ExAC TOPMed gnomAD |
|
COSM3827691 | 863 | G>R | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
rs1174873107 CA362145115 |
865 | K>Q | No |
ClinGen gnomAD |
|
CA132182493 rs1019129911 |
865 | K>R | No |
ClinGen Ensembl |
|
rs200726088 CA132182477 |
867 | T>A | No |
ClinGen 1000Genomes TOPMed |
|
rs1388476165 CA362145084 |
869 | S>T | No |
ClinGen gnomAD |
|
CA3560928 rs764299887 |
871 | Q>* | No |
ClinGen ExAC gnomAD |
|
rs1428244591 RCV000520948 CA362145053 |
873 | G>A | No |
ClinGen ClinVar TOPMed dbSNP |
|
CA362145052 rs1428244591 |
873 | G>V | No |
ClinGen TOPMed |
|
rs760729490 CA3560927 |
874 | T>A | No |
ClinGen ExAC TOPMed gnomAD |
|
CA362145049 rs1237050955 |
874 | T>I | No |
ClinGen gnomAD |
|
rs775488178 CA3560926 |
877 | E>K | No |
ClinGen ExAC gnomAD |
|
rs759711428 CA3560923 |
879 | R>Q | No |
ClinGen ExAC TOPMed gnomAD |
|
rs767729554 CA3560924 |
879 | R>W | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3560922 rs773079634 |
880 | E>* | No |
ClinGen ExAC gnomAD |
|
CA3560921 rs769448762 COSM5751077 |
882 | N>S | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen NCI-TCGA Cosmic ExAC NCI-TCGA TOPMed gnomAD |
CA362144983 rs1561889831 |
884 | S>T | No |
ClinGen Ensembl |
|
rs1011604098 CA132182446 |
885 | G>D | No |
ClinGen TOPMed |
|
CA3560919 rs527543309 |
885 | G>S | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs746524187 CA3560917 |
886 | W>* | No |
ClinGen ExAC gnomAD |
|
CA3560918 rs768660238 |
886 | W>L | No |
ClinGen ExAC gnomAD |
|
rs200047599 CA3560916 |
887 | W>G | No |
ClinGen ExAC gnomAD |
|
rs758148533 CA3560915 |
888 | F>V | No |
ClinGen ExAC gnomAD |
|
rs779376078 CA3560913 |
889 | C>G | No |
ClinGen ExAC |
|
rs754425694 CA3560912 |
889 | C>S | No |
ClinGen ExAC |
|
rs754425694 CA3560911 |
889 | C>Y | No |
ClinGen ExAC |
|
CA362144947 rs372442552 |
890 | Q>* | No |
ClinGen ESP TOPMed |
|
CA132182413 rs372442552 |
890 | Q>E | No |
ClinGen ESP TOPMed |
|
rs1172633904 CA362144944 |
890 | Q>H | No |
ClinGen TOPMed gnomAD |
|
rs764522829 CA3560910 |
890 | Q>P | No |
ClinGen ExAC |
|
rs756544471 CA3560909 |
893 | S>R | No |
ClinGen ExAC TOPMed gnomAD |
|
CA3560908 rs774654339 |
894 | G>R | No |
ClinGen ExAC TOPMed gnomAD |
|
rs767533330 CA362144919 |
895 | A>P | No |
ClinGen ExAC gnomAD |
|
rs767533330 CA3560907 |
895 | A>T | No |
ClinGen ExAC gnomAD |
|
CA362144917 rs1476290190 |
895 | A>V | No |
ClinGen gnomAD |
|
CA3560906 rs759801249 |
896 | P>A | No |
ClinGen ExAC gnomAD |
|
rs564739133 CA132182399 |
898 | W>* | No |
ClinGen 1000Genomes |
|
CA362144895 rs1561889739 |
899 | E>K | No |
ClinGen Ensembl |
|
CA362144885 rs1211315571 |
900 | G>W | No |
ClinGen gnomAD |
|
rs1482694613 CA362144879 |
901 | W>G | No |
ClinGen gnomAD |
|
CA362144880 rs1482694613 |
901 | W>R | No |
ClinGen gnomAD |
|
CA362144868 rs1258713514 |
902 | I>S | No |
ClinGen gnomAD |
|
rs1357283223 CA362144865 |
903 | P>T | No |
ClinGen TOPMed |
|
COSM3919696 | 904 | S>F | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
COSM6170642 | 904 | S>Y | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA Cosmic |
CA3560905 rs774402005 |
905 | N>S | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No |
ClinGen ExAC NCI-TCGA TOPMed gnomAD |
TCGA novel | 907 | L>F | Variant assessed as Somatic; MODERATE impact. [NCI-TCGA] | No | NCI-TCGA |
CA3560904 rs765142953 |
908 | R>K | No |
ClinGen ExAC gnomAD |
|
CA362144785 rs1311349405 |
910 | K>* | No |
ClinGen gnomAD |
|
CA3560902 rs201157559 |
911 | P>L | No |
ClinGen 1000Genomes ExAC TOPMed gnomAD |
|
rs1185109935 CA362144742 |
912 | P>W | No |
ClinGen TOPMed |
1 associated diseases with A1X283
[MIM: 249420]: Frank-Ter Haar syndrome (FTHS)
A syndrome characterized by brachycephaly, wide fontanels, prominent forehead, hypertelorism, prominent eyes, macrocornea with or without glaucoma, full cheeks, small chin, bowing of the long bones and flexion deformity of the fingers. . Note=The disease is caused by variants affecting the gene represented in this entry.
Without disease ID
- A syndrome characterized by brachycephaly, wide fontanels, prominent forehead, hypertelorism, prominent eyes, macrocornea with or without glaucoma, full cheeks, small chin, bowing of the long bones and flexion deformity of the fingers. . Note=The disease is caused by variants affecting the gene represented in this entry.
No regional properties for A1X283
Type | Name | Position | InterPro Accession |
---|---|---|---|
No domain, repeats, and functional sites for A1X283 |
Functions
Description | ||
---|---|---|
EC Number | ||
Subcellular Localization |
|
|
PANTHER Family | PTHR15706 | SH3 MULTIPLE DOMAIN |
PANTHER Subfamily | PTHR15706:SF25 | SH3 AND PX DOMAIN-CONTAINING PROTEIN 2B |
PANTHER Protein Class | scaffold/adaptor protein | |
PANTHER Pathway Category | No pathway information available |
4 GO annotations of cellular component
Name | Definition |
---|---|
anchoring junction | A cell junction that mechanically attaches a cell (and its cytoskeleton) to neighboring cells or to the extracellular matrix. |
cell projection | A prolongation or process extending from a cell, e.g. a flagellum or axon. |
cytoplasm | The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
podosome | An actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell, contain an F-actin-rich core surrounded by a ring structure containing proteins such as vinculin and talin, and have a diameter of 0.5 mm. |
5 GO annotations of molecular function
Name | Definition |
---|---|
phosphatidylinositol-3,5-bisphosphate binding | Binding to phosphatidylinositol-3,5-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' and 5' positions. |
phosphatidylinositol-3-phosphate binding | Binding to phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position. |
phosphatidylinositol-5-phosphate binding | Binding to phosphatidylinositol-5-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 5' position. |
SH2 domain binding | Binding to a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class. |
superoxide-generating NADPH oxidase activator activity | Binds to and increases the activity of the enzyme superoxide-generating NADPH oxidase. |
11 GO annotations of biological process
Name | Definition |
---|---|
adipose tissue development | The process whose specific outcome is the progression of adipose tissue over time, from its formation to the mature structure. Adipose tissue is specialized tissue that is used to store fat. |
bone development | The process whose specific outcome is the progression of bone over time, from its formation to the mature structure. Bone is the hard skeletal connective tissue consisting of both mineral and cellular components. |
cell differentiation | The cellular developmental process in which a relatively unspecialized cell, e.g. embryonic or regenerative cell, acquires specialized structural and/or functional features that characterize a specific cell. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. |
extracellular matrix disassembly | A process that results in the breakdown of the extracellular matrix. |
eye development | The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight. |
heart development | The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood. |
podosome assembly | The aggregation, arrangement and bonding together of a set of components to form a podosome, an actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell. |
protein localization to membrane | A process in which a protein is transported to, or maintained in, a specific location in a membrane. |
skeletal system development | The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton). |
superoxide anion generation | The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways. |
superoxide metabolic process | The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. |
9 homologous proteins in AiPD
UniProt AC | Gene Name | Protein Name | Species | Evidence Code |
---|---|---|---|---|
O00443 | PIK3C2A | Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha | Homo sapiens (Human) | PR |
P14598 | NCF1 | Neutrophil cytosol factor 1 | Homo sapiens (Human) | EV |
Q5TCZ1 | SH3PXD2A | SH3 and PX domain-containing protein 2A | Homo sapiens (Human) | SS |
A6NI72 | NCF1B | Putative neutrophil cytosol factor 1B | Homo sapiens (Human) | SS |
A8MVU1 | NCF1C | Putative neutrophil cytosol factor 1C | Homo sapiens (Human) | SS |
Q61194 | Pik3c2a | Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha | Mus musculus (Mouse) | PR |
O89032 | Sh3pxd2a | SH3 and PX domain-containing protein 2A | Mus musculus (Mouse) | SS |
A2AAY5 | Sh3pxd2b | SH3 and PX domain-containing protein 2B | Mus musculus (Mouse) | SS |
F1M707 | Ncf1 | Neutrophil cytosolic factor 1 | Rattus norvegicus (Rat) | SS |
10 | 20 | 30 | 40 | 50 | 60 |
MPPRRSIVEV | KVLDVQKRRV | PNKHYVYIIR | VTWSSGSTEA | IYRRYSKFFD | LQMQMLDKFP |
70 | 80 | 90 | 100 | 110 | 120 |
MEGGQKDPKQ | RIIPFLPGKI | LFRRSHIRDV | AVKRLIPIDE | YCKALIQLPP | YISQCDEVLQ |
130 | 140 | 150 | 160 | 170 | 180 |
FFETRPEDLN | PPKEEHIGKK | KSGGDQTSVD | PMVLEQYVVV | ANYQKQESSE | ISLSVGQVVD |
190 | 200 | 210 | 220 | 230 | 240 |
IIEKNESGWW | FVSTAEEQGW | VPATCLEGQD | GVQDEFSLQP | EEEEKYTVIY | PYTARDQDEM |
250 | 260 | 270 | 280 | 290 | 300 |
NLERGAVVEV | IQKNLEGWWK | IRYQGKEGWA | PASYLKKNSG | EPLPPKPGPG | SPSHPGALDL |
310 | 320 | 330 | 340 | 350 | 360 |
DGVSRQQNAV | GREKELLSSQ | RDGRFEGRPV | PDGDAKQRSP | KMRQRPPPRR | DMTIPRGLNL |
370 | 380 | 390 | 400 | 410 | 420 |
PKPPIPPQVE | EEYYTIAEFQ | TTIPDGISFQ | AGLKVEVIEK | NLSGWWYIQI | EDKEGWAPAT |
430 | 440 | 450 | 460 | 470 | 480 |
FIDKYKKTSN | ASRPNFLAPL | PHEVTQLRLG | EAAALENNTG | SEATGPSRPL | PDAPHGVMDS |
490 | 500 | 510 | 520 | 530 | 540 |
GLPWSKDWKG | SKDVLRKASS | DMSASAGYEE | ISDPDMEEKP | SLPPRKESII | KSEGELLERE |
550 | 560 | 570 | 580 | 590 | 600 |
RERQRTEQLR | GPTPKPPGVI | LPMMPAKHIP | PARDSRRPEP | KPDKSRLFQL | KNDMGLECGH |
610 | 620 | 630 | 640 | 650 | 660 |
KVLAKEVKKP | NLRPISKSKT | DLPEEKPDAT | PQNPFLKSRP | QVRPKPAPSP | KTEPPQGEDQ |
670 | 680 | 690 | 700 | 710 | 720 |
VDICNLRSKL | RPAKSQDKSL | LDGEGPQAVG | GQDVAFSRSF | LPGEGPGRAQ | DRTGKQDGLS |
730 | 740 | 750 | 760 | 770 | 780 |
PKEISCRAPP | RPAKTTDPVS | KSVPVPLQEA | PQQRPVVPPR | RPPPPKKTSS | SSRPLPEVRG |
790 | 800 | 810 | 820 | 830 | 840 |
PQCEGHESRA | APTPGRALLV | PPKAKPFLSN | SLGGQDDTRG | KGSLGPWGTG | KIGENREKAA |
850 | 860 | 870 | 880 | 890 | 900 |
AASVPNADGL | KDSLYVAVAD | FEGDKDTSSF | QEGTVFEVRE | KNSSGWWFCQ | VLSGAPSWEG |
910 | |||||
WIPSNYLRKK | P |